>SERC1_MOUSE (Q9QZI8) Serine incorporator 1 (Tumor differentially expressed|
           protein 2) (Tumor differentially expressed 1
           protein-like) (Membrane protein TMS-2) (Axotomy-induced
           glyco/Golgi protein 2)
          Length = 453

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +3

Query: 252 AVLRLSLGNFLFFAIFALTMIGVKDQNDRRDAWHHGGWIAKFA 380
           AV RL  G  +F+ + +L MI VK  +D R A H+G W  KFA
Sbjct: 89  AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFA 131

>SERC1_HUMAN (Q9NRX5) Serine incorporator 1 (Tumor differentially expressed|
           protein 2) (Tumor differentially expressed 1
           protein-like)
          Length = 453

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +3

Query: 252 AVLRLSLGNFLFFAIFALTMIGVKDQNDRRDAWHHGGWIAKFA 380
           AV RL  G  +F+ + +L MI VK  +D R A H+G W  KFA
Sbjct: 89  AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFA 131

>SERC3_HUMAN (Q13530) Serine incorporator 3 (Tumor differentially expressed|
           protein 1)
          Length = 473

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 252 AVLRLSLGNFLFFAIFALTMIGVKDQNDRRDAWHHGGWIAKFA 380
           AV R+S    +FF +F+L M  VK   D R A H+G W  K A
Sbjct: 97  AVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIA 139

>SERC3_MOUSE (Q9QZI9) Serine incorporator 3 (Tumor differentially expressed|
           protein 1) (Membrane protein TMS-1) (Axotomy-induced
           glycoprotein 1) (Axotomy-induced glyco/Golgi protein 1)
           (AIGP-1)
          Length = 472

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 252 AVLRLSLGNFLFFAIFALTMIGVKDQNDRRDAWHHGGWIAKFA 380
           AV R++    +FF  F L M+ VK   D R A H+G W  K A
Sbjct: 97  AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIA 139

>OPGH_XANCP (Q8P532) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 645

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -3

Query: 355 WCHASRRSFWSLTPIIVRANIAKNRKLPKLRRRTAFI*NHSSGGV*SNVFIHGMCWRRG 179
           W H +  ++W    II     A +  LP LR R  F      G V S+ F+     RRG
Sbjct: 305 WWHGAESNYWGHNAIIRTQAFADHAGLPSLRGRKPF-----GGHVLSHDFVEAALMRRG 358

>OPGH_XANAC (Q8PPR7) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 645

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -3

Query: 355 WCHASRRSFWSLTPIIVRANIAKNRKLPKLRRRTAFI*NHSSGGV*SNVFIHGMCWRRG 179
           W H +  ++W    II     A +  LP LR R  F      G V S+ F+     RRG
Sbjct: 305 WWHGAESNYWGHNAIIRTQAFADHAGLPSLRGRKPF-----GGHVLSHDFVEAALMRRG 358

>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 198 PWINTFDHTPPEEWFQMNAVLRLSLGNFLFFAIFALTMIGVKDQND 335
           P + TF+    ++W    AV+   +   LF  +  LT+IG K Q D
Sbjct: 21  PPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTD 66

>CYBH_BRAJA (P21960) Probable Ni/Fe-hydrogenase B-type cytochrome subunit|
          Length = 247

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +3

Query: 165 RQFAAPLLQHIPWINTFDHTPPEEWFQMNAVLRLSL--GNFLFFAIFALTMIGVKDQNDR 338
           +QF   +L  I W   F    P+ +   N + + ++  G  LF A   +T   +  +   
Sbjct: 121 KQFWKEVLHEIRWY-AFLEREPKMYVGHNPLAQTAMFTGFTLFVAFMIVTGFALYSEGQG 179

Query: 339 RDAWHHG--GWIAKFAIW 386
            D+W H   GW+  FAIW
Sbjct: 180 IDSWQHKLFGWV--FAIW 195

>Y352_HAEIN (P24324) Hypothetical protein HI0352 (ORF1)|
          Length = 231

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 389 NPDSKLCNPTTMVPCVSPIVLVFD--TNHRESKYCKKQEIAQAETKNGIHLKPFFWWRMI 216
           +P+S LCN   + P  +PI  + +   N+ +      + + +   K GI+ KP  +  +I
Sbjct: 151 SPESPLCNYFPLSPLNNPITFILEEKKNYTQDILIPPKFVYK---KIGIYSKPRIYQNLI 207

Query: 215 KRIYPWDVL 189
            R+  WD+L
Sbjct: 208 FRLI-WDIL 215

>SNT2_SCHPO (Q10077) Lid2 complex component snt2 (Lid2C component snt2)|
          Length = 1131

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 355 WCHASRRSFWSLTPIIVRANIAKNRKLPKLRRRTAFI 245
           WCH+ R S W + P I  ++     K+  L +R  ++
Sbjct: 672 WCHSKRSSEWFVAPPIEESSPKDKSKIVALCQRCGYV 708

>SYFB_GLOVI (Q7NCQ2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 785

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = +3

Query: 222 TPPEEWFQMNAVLRLSLGNFLFFAIFALTMIGVKDQNDRRDAWHHGGWIAKFAIWV 389
           TPP +WF    VL          AI     I V+ Q DRRD   H G  A  ++WV
Sbjct: 598 TPPFDWFAAKGVLA---------AILQPWQIEVEYQADRRDERLHPGRTA--SLWV 642

>MIRA_EMENI (Q8X1Z7) Siderophore iron transporter mirA (Major facilitator|
           iron-regulated transporter A) (Enterobactin permease)
          Length = 609

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 237 WFQMNA--VLRLSLGNFLFFAIFALTMIGVKDQNDRRDAWHHGGWIAKFAIWVV 392
           W Q++A   + L LG  LF    +LT  G  D       WH G +IA   + VV
Sbjct: 271 WVQLDAFGAILLLLGLSLFLVPLSLTGSGNSDD------WHRGSFIAMLVLGVV 318

>ISPDF_HELHP (Q7VFU3) IspD/ispF bifunctional enzyme [Includes:|
           2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT);
           2-C-methyl-D-erythritol 2,4-cyclod
          Length = 389

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 353 VPCVSPIVLVFDTNHRESKYCKKQEIAQAET 261
           V CV P V V DT+  E +Y K++ I   +T
Sbjct: 127 VACVVPFVGVADTSFYEGEYLKRESIKLIQT 157

>PPCK_STRCO (Q93JL5) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 609

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 165 RQFAAPLLQHIPWINTF-DHTPPEEWFQMNAVLR 263
           R+ AA + +H+   NTF DHTP E W Q  A++R
Sbjct: 576 REEAALVPEHL---NTFGDHTPAELWDQYRALVR 606

>OPGH_RHOPA (Q6N5U3) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 721

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -3

Query: 355 WCHASRRSFWSLTPIIVRANIAKNRKLPKLRRRTAFI*NHSSGGV*SNVFIHGMCWRRGA 176
           W H S  ++W    II  +  A +  LP L  R  F      G + S+ F+     RR  
Sbjct: 293 WWHGSESNYWGHNAIIRVSAFAGSAGLPTLAGRKPF-----GGEILSHDFVEAALMRR-- 345

Query: 175 ANW 167
           A W
Sbjct: 346 AGW 348

>PYRH_PSEAE (O82852) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate|
           kinase) (UMP kinase)
          Length = 245

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 264 LSLGNFLFFAIFALTMIGVKDQNDRRDAWHH--GGWIAKFA 380
           L   N     + A++M+GV D  DRR A  H  GG +  F+
Sbjct: 98  LERSNIPALVMSAISMVGVTDHYDRRKAMRHLGGGEVVIFS 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,828,188
Number of Sequences: 219361
Number of extensions: 648007
Number of successful extensions: 1759
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)