ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet16h12 |
|---|---|
| Clone Library Name | barley_pub |
>HTRA3_MOUSE (Q9D236) Probable serine protease HTRA3 precursor (EC 3.4.21.-)| (High-temperature requirement factor A3) (Pregnancy-related serine protease) (Toll-associated serine protease) Length = 459 Score = 31.6 bits (70), Expect = 0.49 Identities = 27/70 (38%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = -1 Query: 350 PSPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEETELCFSPLQGMDSPLW--CDCEP 177 PSPR P V + CC+ CA A E E C PL DSP +C Sbjct: 41 PSPR-----CPGGYVPDLCNCCLVCA--------ASEGEPCGRPL---DSPCGDSLECVR 84 Query: 176 GGKRC-WTHT 150 G RC WTHT Sbjct: 85 GVCRCRWTHT 94
>VG49_BPML5 (Q05261) Gene 49 protein (Gp49)| Length = 179 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -1 Query: 365 PSRPVPSPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEET 237 P++P P+P P E APS++VT + Q T G T Sbjct: 16 PAQPEPAPAPEPETAPSATVTTASAAVRDSMAVQHSTDGVSAT 58
>OAT_BORPE (Q7VSA0) Ornithine aminotransferase (EC 2.6.1.13)| (Ornithine--oxo-acid aminotransferase) Length = 413 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 366 AVPAGAITEAGGRGRPEQQRDGGGHLLHAMRATPTPNRRSRGNGALL 226 AV A+ G + R+ G + + +RA P P R RG G +L Sbjct: 298 AVARAALRVLHDEGMIDNAREQGAYFMQRLRALPGPVREVRGRGLML 344
>OAT_BORPA (Q7W1E4) Ornithine aminotransferase (EC 2.6.1.13)| (Ornithine--oxo-acid aminotransferase) Length = 413 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 366 AVPAGAITEAGGRGRPEQQRDGGGHLLHAMRATPTPNRRSRGNGALL 226 AV A+ G + R+ G + + +RA P P R RG G +L Sbjct: 298 AVARAALRVLHDEGMIDNAREQGAYFMQRLRALPGPVREVRGRGLML 344
>OAT_BORBR (Q7WP51) Ornithine aminotransferase (EC 2.6.1.13)| (Ornithine--oxo-acid aminotransferase) Length = 413 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = -3 Query: 366 AVPAGAITEAGGRGRPEQQRDGGGHLLHAMRATPTPNRRSRGNGALL 226 AV A+ G + R+ G + + +RA P P R RG G +L Sbjct: 298 AVARAALRVLHDEGMIDNAREQGAYFMQRLRALPGPVREVRGRGLML 344
>UNC37_CAEEL (O02482) Transcription factor unc-37 (Uncoordinated protein 37)| Length = 612 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 321 PEQQRDGGGHLLHAMRATPTPNRRSRGNGALLLPP 217 P+ +D + L A+ A T + R GNGA LPP Sbjct: 78 PQLSQDNQANCLAALEAFKTASPRENGNGAPALPP 112
>SELO_HUMAN (Q9BVL4) Selenoprotein O| Length = 669 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = -1 Query: 356 PVPSPRPGDEAAPSSSVTVVAICCMRCAQ---RQPQTAGAEETELCFSPLQGMDSP 198 PV +P PG E APS+ V C R RQP+ E L L G+ +P Sbjct: 59 PVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSEPALA---LLGLGAP 111
>VGLH_MCMVS (P30673) Glycoprotein H precursor| Length = 725 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -1 Query: 278 CAQRQPQTAGAEETELCFSPLQGMDSPLWCDCEPGGKRCWTHTHTRALSRPEWWPHYR 105 C+ R+ + G EL +P +G S ++ C GG+R +T RAL P R Sbjct: 475 CSPREQISWG----ELLMNPQRGAPSEIYSPCVSGGRRDYTGPSVRALMESAHRPERR 528
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%) Frame = -1 Query: 284 MRCAQRQPQTAGAEETELCFSPLQGMDSPLWCD-----------CEPGGKRC 162 +RC+Q + QT + + +CFSP Q L C C PG +C Sbjct: 238 LRCSQFRNQTESSNVSRICFSPQQENGKQLLCGRGENFLCASGICIPGKLQC 289
>LAMB3_HUMAN (Q13751) Laminin beta-3 chain precursor (Laminin 5 beta 3) (Laminin| B1k chain) (Kalinin B1 chain) Length = 1172 Score = 28.9 bits (63), Expect = 3.2 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 10/102 (9%) Frame = -1 Query: 347 SPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEETELC--------FSPLQGMDSP-- 198 +P+PG A PS++V V +C Q TAG E C + P +G D+ Sbjct: 260 APKPGASAGPSTAVQVHDVCVC-----QHNTAG-PNCERCAPFYNNRPWRPAEGQDAHEC 313 Query: 197 LWCDCEPGGKRCWTHTHTRALSRPEWWPHYRPLVCLPSAAAY 72 CDC + C H+ P V S AY Sbjct: 314 QRCDCNGHSETC----------------HFDPAVFAASQGAY 339
>VE2_HPV32 (P36791) Regulatory protein E2| Length = 394 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 256 PPEQRKRSSASPPCKGWIHHYGVT 185 PP +R R S PP K + HYGVT Sbjct: 257 PPRKRYRQSLQPPTK-HLQHYGVT 279
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 4.2 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = -2 Query: 274 RNANPKPPEQRKRSSASPPCKGWIHHYGVTVSRGESVVGRTHTHALCLGRSG---GRTT 107 R A+P PP +R R+S SPP K + H R +V R R G GR+T Sbjct: 632 RTASPPPPPKR-RASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRST 689
>PPME1_YARLI (Q6CGE1) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)| Length = 419 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 102 WSVVRPPLRPRQSACVCVRPTTLS 173 W+V +R R+SACV V PT +S Sbjct: 289 WTVQSHTIRNRESACVSVPPTLIS 312
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 Query: 360 PAGAITEAGGRGRPEQQRDGG 298 P G AGG RPE QR+GG Sbjct: 385 PEGGYRPAGGAPRPEGQREGG 405
>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3963 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = +2 Query: 32 PYATACHLWFCVYH 73 PYATAC L CVYH Sbjct: 3161 PYATACGLDVCVYH 3174
>M3K1_HUMAN (Q13233) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) (Fragment) Length = 1495 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/62 (35%), Positives = 26/62 (41%) Frame = -1 Query: 350 PSPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEETELCFSPLQGMDSPLWCDCEPGG 171 PSP P D A + VA+ A + GA TE +P G SP EPG Sbjct: 72 PSPEPADAAGSGTGFQPVAVPPPHGAASR---RGAHLTESVAAPDSGASSP--AAAEPGE 126 Query: 170 KR 165 KR Sbjct: 127 KR 128
>FOXO1_HUMAN (Q12778) Forkhead box protein O1A (Forkhead in rhabdomyosarcoma)| Length = 655 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Frame = +1 Query: 76 AAALGRQTSGR*CGHHSGRDKARVCVCVQQRFPPGSQSHH----SGESIPCRGEKQSSVS 243 AAA +G CG G + + Q PPG S H + P G+ + S S Sbjct: 95 AAAAAAAATGGLCGDFQGPEAGCLHPAPPQPPPPGPVSQHPPVPPAAAGPLAGQPRKSSS 154 Query: 244 SAPAVWG 264 S WG Sbjct: 155 SRRNAWG 161
>FUMH_RAT (P14408) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)| (Fumarase) Length = 507 Score = 28.1 bits (61), Expect = 5.4 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 22/91 (24%) Frame = +2 Query: 59 FCVYHMQQR-----SADRLVVGSAATTPAETKRVCVCASNNAFP---------------- 175 FC+ +R SA ++ G AAT P V AS N+F Sbjct: 5 FCLLARSRRFPRVPSAGAVLSGEAATLPRCAPNVVRMASQNSFRIEYDTFGELKVPTDKY 64 Query: 176 -PAHSHTIVVNPSLAGGRSRAPFPLLRRFGV 265 A + +N + G R P P+++ FG+ Sbjct: 65 YGAQTVRSTMNFKIGGATERMPIPVIKAFGI 95
>HTRA3_HUMAN (P83110) Probable serine protease HTRA3 precursor (EC 3.4.21.-)| (High-temperature requirement factor A3) (Pregnancy-related serine protease) Length = 453 Score = 28.1 bits (61), Expect = 5.4 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Frame = -1 Query: 350 PSPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEETELCFSPLQGMDSPLW--CDCEP 177 PSPR P V + CC+ CA A E E C PL DSP +C Sbjct: 35 PSPR-----CPGGYVPDLCNCCLVCA--------ASEGEPCGGPL---DSPCGESLECVR 78 Query: 176 GGKRC-WTH 153 G RC W+H Sbjct: 79 GLCRCRWSH 87
>CUTC_PHOLL (Q7N557) Copper homeostasis protein cutC| Length = 248 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -1 Query: 308 VTVVAICCMR--CAQRQPQTAGAEETELCFSPLQGMDSP 198 +T + ICC CA Q AGA+ ELC SP +G +P Sbjct: 1 MTKLEICCFSVGCALIAQQ-AGADRIELCASPAEGGLTP 38
>TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (TIF1-alpha)| (Tripartite motif protein 24) Length = 1051 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 6/39 (15%) Frame = -1 Query: 365 PSRPVPSPRPGDEA-APSSSVTVVA-----ICCMRCAQR 267 P P P+P PG A PS T V +C CA+R Sbjct: 99 PPAPAPAPAPGSPAGGPSPFATQVGVIRCPVCSQECAER 137
>RPOA_PRRSR (Q9WJB2) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3960 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 32 PYATACHLWFCVYH 73 PYATAC L C+YH Sbjct: 3158 PYATACGLDVCIYH 3171
>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3966 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 32 PYATACHLWFCVYH 73 PYATAC L C+YH Sbjct: 3164 PYATACGLDVCIYH 3177
>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)| Length = 795 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -1 Query: 275 AQRQPQTAGAEETELCFSPLQGMDSPLW 192 AQR+ Q G EETE P G + P W Sbjct: 766 AQREKQDLGEEETEETQQPPLGGEEPTW 793
>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor| (N-CAM 180) (NCAM-180) Length = 1115 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -1 Query: 356 PVPSPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAE 243 P P+P P A+P ++V A + Q P T G + Sbjct: 947 PAPTPTPAGAASPLAAVAAPATDAPQAKQEAPSTKGPD 984
>LAR_CAEEL (Q9BMN8) Tyrosine-protein phosphatase Lar-like precursor (EC| 3.1.3.48) (Protein-tyrosine phosphate 3) Length = 2200 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -3 Query: 321 PEQQRDGGGHLLHAMRATPTPNRRSRGNGALLLPPA 214 P +Q +G H+ +M P P SR NG +P A Sbjct: 1573 PYEQMNGNHHMESSMDLYPLPTSHSRSNGYAPVPVA 1608
>ODP2_MYCPN (P75392) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 402 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -1 Query: 362 SRPVPSPRPGDEAAPSSSVTVVAICCMRCA 273 S P P+P P AAPS T +AI MR A Sbjct: 155 SAPTPTPAPASAAAPSGEET-IAITTMRKA 183
>YPTO_VIBHA (Q9KIQ6) UPF0042 protein in ptsN-ptsO intergenic region (orf4)| Length = 287 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -1 Query: 143 RALSRPEWWPHYRPLVCL--PSAAAYDIHKTTSDMQWHMVACIE 18 R L P W P RPL L P A + H++ D+++ + + IE Sbjct: 186 RFLPNPHWEPALRPLTGLDGPIGAFLEQHQSVLDLKYQIESFIE 229
>CUTC_SHIFL (P67825) Copper homeostasis protein cutC| Length = 248 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -1 Query: 308 VTVVAICC--MRCAQRQPQTAGAEETELCFSPLQGMDSP 198 + ++ ICC M CA Q GA+ ELC +P +G +P Sbjct: 1 MALLEICCYSMECALTAQQN-GADRVELCAAPKEGGLTP 38
>CUTC_ECOLI (P67826) Copper homeostasis protein cutC| Length = 248 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -1 Query: 308 VTVVAICC--MRCAQRQPQTAGAEETELCFSPLQGMDSP 198 + ++ ICC M CA Q GA+ ELC +P +G +P Sbjct: 1 MALLEICCYSMECALTAQQN-GADRVELCAAPKEGGLTP 38
>CUTC_ECOL6 (Q8FGQ2) Copper homeostasis protein cutC| Length = 248 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -1 Query: 308 VTVVAICC--MRCAQRQPQTAGAEETELCFSPLQGMDSP 198 + ++ ICC M CA Q GA+ ELC +P +G +P Sbjct: 1 MALLEICCYSMECALTAQQN-GADRVELCAAPKEGGLTP 38
>CUTC_ECO57 (Q8XCH4) Copper homeostasis protein cutC| Length = 248 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -1 Query: 308 VTVVAICC--MRCAQRQPQTAGAEETELCFSPLQGMDSP 198 + ++ ICC M CA Q GA+ ELC +P +G +P Sbjct: 1 MALLEICCYSMECALTAQQN-GADRVELCAAPKEGGLTP 38
>KR16_ICHV1 (Q00098) Gene 16 protein kinase (EC 2.7.11.1)| Length = 387 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%) Frame = -1 Query: 278 CAQRQPQTAG--AEETELCFSPLQGMDSPLW------CDCEPGGKRCWTHTHTRALSR-- 129 CA P A A T+ + L G+D+PLW D PG H + LSR Sbjct: 30 CALTDPGLAWVHAYYTDEALNWLAGLDNPLWKSGADVMDLLPGDMYVSEHVFKKILSRVG 89 Query: 128 PEWWPHYRPL 99 PE++ + P+ Sbjct: 90 PEFFDSFIPI 99
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/57 (29%), Positives = 27/57 (47%) Frame = -1 Query: 365 PSRPVPSPRPGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEETELCFSPLQGMDSPL 195 P+ P+PSP PG E+ P+SS+ Q +P + A+ +P M P+ Sbjct: 1018 PAAPLPSPTPG-ESPPASSL----------PQPEPSSLPAQGVPTPLAPSPAMQPPV 1063
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -2 Query: 274 RNANPKPPEQRKRSSASPPCKGWIHHYGVTVSRGESVVGR 155 R A+P PP +R R+S SPP K + H R V R Sbjct: 627 RTASPPPPPKR-RASPSPPPKRRVSHSPPPKQRSSPVTKR 665
>PNPO_HUMAN (Q9NVS9) Pyridoxine-5'-phosphate oxidase (EC 1.4.3.5)| (Pyridoxamine-phosphate oxidase) Length = 261 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = -1 Query: 164 CWTHTHTRALSRPEWWPHYRPLVCLPSAA 78 CW T RP WP Y +C SAA Sbjct: 3 CWLRGVTATFGRPAEWPGYLSHLCGRSAA 31
>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,| muscle-specific form (Alpha-NAC, muscle-specific form) Length = 2187 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 365 PSRPVPSPR-PGDEAAPSSSVTVVAICCMRCAQRQPQTAGAEET 237 PS+ P P + +APS VT V + ++ P+TA +ET Sbjct: 1321 PSKKTPKTAVPKETSAPSEGVTAVPLEIPPSPRKAPKTAAPKET 1364
>PARC_HUMAN (Q8IWT3) p53-associated parkin-like cytoplasmic protein| (UbcH7-associated protein 1) Length = 2517 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Frame = +2 Query: 56 WFCVYHMQQRSADRLVVGSAATTPAETKRVCVCASNNAFPPAHSHTIVVNP--SLAGGRS 229 W +++QR R + AA+ + +R+C + PP S P + GR Sbjct: 1396 WLLDQYLEQRETSRNPLSRAASFASRVRRLCHLLVHVEPPPGPSPEPSTRPFSKNSKGRD 1455 Query: 230 RAPFP 244 R+P P Sbjct: 1456 RSPAP 1460
>FATH_HUMAN (Q14517) Cadherin-related tumor suppressor homolog precursor (Protein| fat homolog) Length = 4590 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 118 HHSGRDKARVCVCVQQRFPPGSQSHHSGESIPC 216 HH +A VC+C + R PP HH E PC Sbjct: 3776 HH----RAAVCLCKEGRCPP---VHHGCEDDPC 3801
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -2 Query: 274 RNANPKPPEQRKRSSASPPCKGWIHHYGVTVSRGESVVGR 155 R A+P PP +R R+S SPP K + H R V R Sbjct: 613 RTASPPPPPKR-RASPSPPPKRRVSHSPPPKQRSSPVTKR 651 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,248,571 Number of Sequences: 219361 Number of extensions: 1392750 Number of successful extensions: 4872 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4855 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
