>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 289 PGVLPHRDAAGDDCRPQPQHPRRHLLRPDGRLRRVQGAAGDRP----HGAPRGVP 441
           PG++P R  A     P+PQ PR    RP        G AG RP     G PR VP
Sbjct: 195 PGMMPPRPGASAGGPPRPQAPRPQAPRPG------PGTAGGRPGSSAGGPPRPVP 243

>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 334 PQPQHPRRHLLRPDGRLRRVQGAAGDRPHGAPRGVPG 444
           P+PQ P  +   P    R   G AG RP G PR  PG
Sbjct: 268 PRPQAPGGNRPSPGSMPRPQGGGAGPRPGGGPRPNPG 304

>CY24B_HUMAN (P04839) Cytochrome b-245 heavy chain (p22 phagocyte B-cytochrome)|
           (Neutrophil cytochrome b 91 kDa polypeptide)
           (CGD91-phox) (gp91-phox) (gp91-1) (Heme-binding membrane
           glycoprotein gp91phox) (Cytochrome b(558) beta chain)
           (Cytochrome b558 be
          Length = 569

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 323 TIAARNPNTRVGIYFDRTDAYAEYKGQQ 406
           TIA+++PNTR+G++    +A AE   +Q
Sbjct: 521 TIASQHPNTRIGVFLCGPEALAETLSKQ 548

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +1

Query: 262 RGVPERHLQPGVLPHRDAAGDDCRPQPQHPRRHLLRPDGRLRRVQGAAGDRPHGAPRGVP 441
           RG+P R+ QPG            R +P   R   + P G L  +QG  GDR    P G P
Sbjct: 833 RGIPGRNGQPGP-----------RGEPGISRPGPMGPPG-LNGLQGEKGDRGPTGPIGFP 880

Query: 442 G 444
           G
Sbjct: 881 G 881

>PRRP_BOVIN (P81264) Prolactin-releasing peptide precursor (PrRP)|
           (Prolactin-releasing hormone) [Contains:
           Prolactin-releasing peptide PrRP31; Prolactin-releasing
           peptide PrRP20]
          Length = 98

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 364 LRPDGRLRRVQGAAGDRPHGAPRGVP 441
           +RP GR  R + A GD P   PR VP
Sbjct: 47  IRPVGRFGRRRAAPGDGPRPGPRRVP 72

>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor|
           (AChE Q subunit)
          Length = 471

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = +1

Query: 265 GVPERHLQPGVLPHRDAAGDDCRPQPQHPRRHLLRPDGRLRRVQGAAGDRPHGAPRGVPG 444
           G P R  +PGV   R   G  C P P  PR    + D  L  + GA G  P G P+G+ G
Sbjct: 145 GRPGRKGRPGVRGPRGMPGSPCSPGPIGPRGE--KGDIGLTGLPGARG--PMG-PKGLTG 199

>FXR1_MOUSE (Q61584) Fragile X mental retardation syndrome-related protein 1|
          Length = 677

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +1

Query: 316 AGDDCRPQPQHPRRHLLRPDGRLRRVQGAAGDRPHGAPRG 435
           AG+D R + +H R    RP GR R V G  G    G PRG
Sbjct: 454 AGEDDR-ETRHQRDSRRRPGGRGRSVSGGRG---RGGPRG 489

>FXR1_CRIGR (O70523) Fragile X mental retardation syndrome-related protein 1|
          Length = 621

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +1

Query: 316 AGDDCRPQPQHPRRHLLRPDGRLRRVQGAAGDRPHGAPRG 435
           AG+D R + +H R    RP GR R V G  G    G PRG
Sbjct: 425 AGEDDR-ETRHQRDSRRRPGGRGRSVSGGRG---RGGPRG 460


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,322,800
Number of Sequences: 219361
Number of extensions: 468540
Number of successful extensions: 1662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)