ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet16g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 44 1e-04
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 35 0.075
314KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 33 0.29

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = +1

Query: 304 CPVDVLKLVACVDXXXXXXXXXXXXXXSETCCPLLSGVADL 426
           CP+D LKL ACVD               +TCCPLL G+ DL
Sbjct: 261 CPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDL 301



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 298 GKCPVDVLKLVACVDXXXXXXXXXXXXXXSETCCPLLSGVADL 426
           G+CP+D LKL  C                 E CCPLL G+ DL
Sbjct: 46  GRCPIDALKLKVCAKVLGLVKVGLPQY---EQCCPLLEGLVDL 85



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 298 GKCPVDVLKLVACVDXXXXXXXXXXXXXXSETCCPLLSGVADL 426
           GKCP D LKL  C D              +  CC LL G+ +L
Sbjct: 52  GKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNL 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,593,954
Number of Sequences: 219361
Number of extensions: 163186
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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