ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet16e10 |
|---|---|
| Clone Library Name | barley_pub |
>HME2_HUMAN (P19622) Homeobox protein engrailed-2 (Hu-En-2)| Length = 333 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -1 Query: 390 PPPRETESASAARNEPGAEPYRASCGGGGIPPWCADVGR 274 P P E +A + +P + P S GGGG P AD GR Sbjct: 6 PKPGEAAAAVEGQRQPESSPGGGSGGGGGSSPGEADTGR 44
>ORAI3_HUMAN (Q9BRQ5) Protein orai-3| Length = 295 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = -1 Query: 396 ASPPPRETESASAARNEPGAEPYRASCGGGGI--PPWCA 286 AS PR + SA+ ++ EP P R +CGGGG P W A Sbjct: 207 ASNLPRSSASAAPSQAEPACPP-RQACGGGGAHGPGWQA 244
>EXO84_GIBZE (Q4HYZ2) Exocyst complex component EXO84| Length = 679 Score = 31.2 bits (69), Expect = 0.62 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +2 Query: 254 RRSLAMNRPTSAHHGGMPPPPQ---LARYGSAPGSFLAALADSVSRGG-GEAP 400 R S N+P+S +GG PP PQ LA Y P +AA SR G G AP Sbjct: 71 RYSTRFNQPSSISNGGAPPMPQMPSLANY--EPRETVAAARKPPSRSGPGVAP 121
>LRC41_HUMAN (Q15345) Leucine-rich repeat-containing protein 41 (Protein Muf1)| Length = 843 Score = 30.8 bits (68), Expect = 0.81 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 Query: 175 APTITSARASSVAPLRRAPASCCAEPSPV 261 AP TS+ +SS + +RAPAS +P P+ Sbjct: 338 APAATSSASSSTSSYKRAPASSAPQPKPL 366
>KIFC2_HUMAN (Q96AC6) Kinesin-like protein KIFC2| Length = 838 Score = 30.8 bits (68), Expect = 0.81 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = +1 Query: 139 GPP---RAPLCSVLRAPTITSARASSVAPLRRAPASCCAEPSP 258 GPP R PL +VL AP T+ARA P R P+S + P P Sbjct: 785 GPPAPLRRPL-AVLHAPVPTTARARLSRPQRACPSSPGSRPCP 826
>ZSWM5_HUMAN (Q9P217) Zinc finger SWIM domain-containing protein 5| Length = 1185 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = +2 Query: 287 AHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGEA 397 A G PPP A GSAPG A + + G G A Sbjct: 135 AEEGPQPPPGAAAPAGSAPGGVAAGASPGLGAGAGAA 171
>POLS_RUBV (P08564) Structural polyprotein [Contains: Spike glycoprotein E1;| Spike glycoprotein E2] (Fragment) Length = 522 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +1 Query: 139 GPPRAPLCSVLRAPTITSARASSVAPLRRA---PASCCAEPSPV 261 GPPR L A + R S A L R PA+CCA P PV Sbjct: 342 GPPRFANAIPLTARGLWGPRQSVPAALGRRRGPPAACCAAPGPV 385
>SIM2_MOUSE (Q61079) Single-minded homolog 2 (SIM transcription factor) (mSIM)| Length = 657 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 9/48 (18%) Frame = +1 Query: 142 PPRAPLCSVLR---------APTITSARASSVAPLRRAPASCCAEPSP 258 PP P C R AP S A+ +A L RAP CCA P+P Sbjct: 541 PPSFPSCGHYREEPALGPAKAPRQASRDAARLA-LARAPPECCAPPAP 587
>DR102_ARATH (Q05212) DNA-damage-repair/toleration protein DRT102| Length = 230 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = -1 Query: 333 PYRASCGGGGIPPWCADVGRFMANDRRWLGTAG----GRSTAERSYGASARAGDCWCAQN 166 P+++ C G PW + + F+ N + G G ST ++ +A C A+N Sbjct: 55 PFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKN 114 Query: 165 R 163 R Sbjct: 115 R 115
>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2| Length = 1125 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%) Frame = -1 Query: 399 GASPPPRETESASAARNEPGAEPYRASCGGG----GIPPW 292 GA+PP T +A A PG P +A G G P W Sbjct: 391 GATPPVERTATAPTAPKRPGHRPAQAPAAGAPRRPGRPEW 430
>GLUQ_DEIRA (Q9RTR9) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 295 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +2 Query: 287 AHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGEA 397 A GG PP + +G APG LA LA ++ G +A Sbjct: 235 AKRGGAPPLSEWREHGEAPGRVLADLAHTLPWPGFQA 271
>CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 protein)| Length = 333 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = -1 Query: 399 GASPPPRETESASAARNEPGAEPYRASCGG-GGIPPWCADVGRFMANDRRWLGTAGGRST 223 G PP ++ + A +PG P G GG PP G++ A ++ G Sbjct: 49 GGYPPQQQQRPPTGAPQQPGGYPTPPPPGAPGGYPPQQQPAGQYGAPPQQQPAGQYGAPQ 108 Query: 222 AERSYGASARAG 187 YGA AG Sbjct: 109 PAGQYGAPQPAG 120
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -1 Query: 306 GIPPWCADVGRFMANDRRWLGTAGGRSTAERSYGASARAGDCWCAQNRA 160 G+PP + G + + WL A + A R+ GA AG CA RA Sbjct: 1134 GVPPRASTRGGELDPNTCWLRAAANVAQAARACGAYTSAGCPKCAYGRA 1182
>CECR6_HUMAN (Q9BXQ6) Cat eye syndrome critical region protein 6| Length = 578 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Frame = +2 Query: 254 RRSLAMNRPTSAHHGGMPPPPQLAR----------YGSAPGSFLAALADSVSRGGG 391 R +L R S+ G PPPP AR + GS ++ + S SRGGG Sbjct: 2 RPALGHPRSVSSASGSFPPPPAAARLQPLFLRGGSFRGRRGSGDSSTSTSTSRGGG 57
>NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-phototropic| hypocotyl 3-like protein) (NPH3-like protein) Length = 762 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +2 Query: 281 TSAHHGGMPPPPQLARY-GSAPGSFLAALADSVSRGG 388 +S G PPPPQ Y G P S AA + S S GG Sbjct: 464 SSPGRGDPPPPPQPEYYSGRMPPSSAAAASASASTGG 500
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -1 Query: 306 GIPPWCADVGRFMANDRRWLGTAGGRSTAERSYGASARAGDCWCAQNRA 160 G+PP + G + + WL A + A R+ GA AG CA RA Sbjct: 1135 GVPPRVSTRGGELDPNTCWLRAAANVAQAARACGAYTSAGCPKCAYGRA 1183
>ARGC_THET2 (P96136) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 345 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -1 Query: 402 AGASPPPRETESASAARNEPGAEPYRASCGGGGIPPWCADVGRFMANDRR 253 +G S RE E + A +PY+A IP ++GR +A RR Sbjct: 169 SGVSGAGREAEGTAFAEVNENLKPYKAGGTHRHIPEMERNLGRILAQGRR 218
>TILS_ECO57 (Q8X8W8) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 431 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 9/66 (13%) Frame = -1 Query: 387 PPRETESASAARNEPGAEPYRASCGGG---------GIPPWCADVGRFMANDRRWLGTAG 235 PPR E+ S PG GG G+PPW D + + AG Sbjct: 349 PPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAG 408 Query: 234 GRSTAE 217 G T E Sbjct: 409 GFVTQE 414
>CU57_ARADI (P80519) Adult-specific rigid cuticular protein 15.7 (ACP 15.7)| Length = 159 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 142 PPRAPLCSVLRAPTITSARASSVAPLRRAPASCCAEPSPVVGH 270 PP AP+ + AP + +A A + A L AP + S V+GH Sbjct: 104 PPVAPVAPAVAAPVVAAAPALAGAHLLAAPG--ISSYSSVIGH 144
>ATG3_RAT (Q6AZ50) Autophagy-related protein 3 (APG3-like)| (Preconditioning-inducible gene 1 protein) Length = 314 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 281 TSAHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGE 394 T +H +PPPP + + + + ++V+ GGGE Sbjct: 246 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGE 283
>ATG3_MOUSE (Q9CPX6) Autophagy-related protein 3 (APG3-like)| Length = 314 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 281 TSAHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGE 394 T +H +PPPP + + + + ++V+ GGGE Sbjct: 246 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGE 283
>ATG3_HUMAN (Q9NT62) Autophagy-related protein 3 (APG3-like) (hApg3) (Protein| PC3-96) Length = 314 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 281 TSAHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGE 394 T +H +PPPP + + + + ++V+ GGGE Sbjct: 246 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGE 283
>ATG3_XENLA (Q6GQE7) Autophagy-related protein 3 (APG3-like)| Length = 313 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 281 TSAHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGE 394 T +H +PPPP + + + + ++V+ GGGE Sbjct: 245 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGE 282
>ATG3_XENTR (Q5I0S6) Autophagy-related protein 3 (APG3-like)| Length = 312 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 281 TSAHHGGMPPPPQLARYGSAPGSFLAALADSVSRGGGE 394 T +H +PPPP + + + + ++V+ GGGE Sbjct: 244 TIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGE 281
>MUTS_RHOPA (P61670) DNA mismatch repair protein mutS| Length = 907 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/57 (33%), Positives = 25/57 (43%) Frame = -1 Query: 402 AGASPPPRETESASAARNEPGAEPYRASCGGGGIPPWCADVGRFMANDRRWLGTAGG 232 A + PP+E SA AA P E CA++GR +A+D L GG Sbjct: 409 AQLASPPQEIASAMAALQRPSRE-------------LCAELGRALADDLPLLKRDGG 452
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 27.7 bits (60), Expect = 6.8 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 16/93 (17%) Frame = -1 Query: 402 AGASPPPRETESASAARNEPGAEPYRA------SCGGGGIP-----PWCADVGRFMANDR 256 AG+ PPP + SAS++ + + + A S GGG P P + ++ R Sbjct: 247 AGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSAR 306 Query: 255 RWLGTAGGRSTAERSYGASAR-----AGDCWCA 172 + G GG + G + + A CW A Sbjct: 307 GYQGYPGGDYSGGPQDGGAGKGPADMASQCWGA 339
>ERF3_TOBAC (Q9SXS8) Ethylene-responsive transcription factor 3| (Ethylene-responsive element-binding factor 3 homolog) (EREBP-5) (NtERF5) Length = 225 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 7/43 (16%) Frame = -1 Query: 297 PWCADVGRFMAN-------DRRWLGTAGGRSTAERSYGASARA 190 PW GRF A R WLGT A R+Y A+ARA Sbjct: 35 PW----GRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARA 73
>AB14B_HUMAN (Q96IU4) Abhydrolase domain-containing protein 14B| (CCG1-interacting factor B) Length = 210 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +2 Query: 257 RSLAMNRPTSAHHGGMPPPPQLARYGSAPGSFLAALADSVSRG 385 R++A++ P H P + APGSFLAA+ D++ G Sbjct: 63 RAVAIDLPGLGHSKEAAAPAPIGEL--APGSFLAAVVDALELG 103
>CORA_HBVW2 (P03148) Core antigen| Length = 185 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 142 PPRAPLCSVLRAPTITSARASSVAPLRRAPA 234 PP AP+ S L T+ R +P RR P+ Sbjct: 134 PPNAPILSTLPETTVVRRRDRGRSPRRRTPS 164
>CORA_HBVAW (P03149) Core antigen| Length = 185 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 142 PPRAPLCSVLRAPTITSARASSVAPLRRAPA 234 PP AP+ S L T+ R +P RR P+ Sbjct: 134 PPNAPILSTLPETTVVRRRDRGRSPRRRTPS 164
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 27.3 bits (59), Expect = 8.9 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = -1 Query: 399 GASPPPRETESASAARNEPGAEPY-RASCGGGGIPPWCADVGRFMANDRRWLGTAGGRST 223 GA+P PR S S AEPY R G G A G + A R + G GG S+ Sbjct: 1275 GAAPGPRLRHSKSIDEGMFSAEPYLRLESAGSG-----AGYGGYGAGSRAYGG--GGGSS 1327 Query: 222 AERSY 208 A S+ Sbjct: 1328 AFTSF 1332
>CHRD_BRARE (O57472) Chordin precursor (Protein chordino)| Length = 940 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +1 Query: 160 CSVLRAPTITSARASSVAPLRRAPASCCAEPSP 258 C + P +T +R P+RR P+ CC E P Sbjct: 810 CEKVTCPPLTCSR-----PIRRNPSDCCKECPP 837
>STRN4_MOUSE (P58404) Striatin-4 (Zinedin)| Length = 760 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -1 Query: 399 GASPPPRETESASAARNEPGAEPYRASCGGGGIP 298 G+ P T +A A+ PG P GGGG P Sbjct: 21 GSGTAPNPTAAAPASSPAPGPGPVGKGGGGGGSP 54
>CT055_HUMAN (Q9BQ89) Protein C20orf55| Length = 295 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +1 Query: 142 PPRAPLCSVLRAPTITSARASSVAPLRRAPASCCAEPSP 258 PPR P P+ ++ R V PL +PA C P P Sbjct: 141 PPRPP-------PSTSAVRRVDVRPLPASPARPCPSPGP 172
>CORA_HBVW9 (P17099) Core antigen| Length = 214 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 142 PPRAPLCSVLRAPTITSARASSVAPLRRAPA 234 PP AP+ S L T+ R +P RR P+ Sbjct: 163 PPNAPILSTLPETTVVRRRDRGRSPRRRTPS 193
>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 2 (Membrane-associated guanylate kinase inverted 2) (MAGI-2) (Atrophin-1-interacting protein 1) (Atrophin-1-interacting protein A) Length = 1455 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = -1 Query: 402 AGASPPPRETESASAARNE-PGAEPYRASCGGGG 304 AG PR + R E PGA P A GGGG Sbjct: 1363 AGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGG 1396
>INP5E_MOUSE (Q9JII1) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 647 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -3 Query: 97 PWPCSSGALFLLARARRSEGSDARGDGSWAD 5 P PC S +L + ++RR+ GS+ W+D Sbjct: 133 PLPCLSTSLQEIPKSRRATGSEGGSPSLWSD 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,063,733 Number of Sequences: 219361 Number of extensions: 542188 Number of successful extensions: 3211 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3201 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
