>COTO_BACSU (O31622) Spore coat protein O|
          Length = 227

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 227 HGSDKGRSPAPPTAMAEMPRVEMAGDGRVERLEKFSHYVARQLGFEEAS 373
           H +DK    APP    + P  +M    +++ L K  H + R L   EA+
Sbjct: 137 HSADKAEEKAPPARKVKKPMSKMTIHEKIDFLTKLPHNMPRALCLIEAN 185

>PDZK6_HUMAN (Q9ULD6) PDZ domain-containing protein 6|
          Length = 942

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 381 GHSLASSNPSCLAT*WENFSRRSTRPSPAISTLGISAMAVGGAGD 247
           G S  +++P+C  T + ++S ++ +PSP+ S+ G      GG  D
Sbjct: 682 GTSKVATSPTCRRTLFGDYSLKTRKPSPSCSSGGSDNGCEGGEDD 726

>RAD51_YEAST (P25454) DNA repair protein RAD51|
          Length = 400

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 332 SHYVARQLGFEEASECPQLCKAANSYLRQSSSCMADVY 445
           +H    +LGF++   C +LCK  +S     + C+  +Y
Sbjct: 351 AHSSTTRLGFKKGKGCQRLCKVVDSPCLPEAECVFAIY 388

>UVRB_DESDG (Q30ZK3) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 682

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 215 AALCHGSDKGRSPAPPTAMAEMPRV-----EMAGDGRVERLEKFSHYVARQLGFEEASE 376
           AA   G  +GR  AP    AE         E  G G ++RLE+     AR L FE+A+E
Sbjct: 609 AAKGRGKGRGRQAAPAQTAAEDTTAYGISAEELG-GLIQRLEREMRESARDLEFEKAAE 666


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,166,717
Number of Sequences: 219361
Number of extensions: 845236
Number of successful extensions: 3202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3202
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)