ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet15c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds Length = 1260 Score = 478 bits (241), Expect = e-132 Identities = 330/357 (92%), Gaps = 2/357 (0%) Strand = Plus / Plus Query: 6 caaaatcaagtgttcttgcatcaacaaatgggcatggctcccctcttccgctcgttgcct 65 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct: 4 caaaatcaagtgttcttgcatcaacacatgggcatggctcccctcttccgctcgttggct 63 Query: 66 ctcctcgtcctcctagtcgctctgtccagcaccacattaccttcctcccgttctacgtcc 125 |||||||||||||||||| | ||||||||||||||||| || ||||||||| |||||||| Sbjct: 64 ctcctcgtcctcctagtcaccctgtccagcaccacattgccctcctcccgtgctacgtcc 123 Query: 126 gtcgatggagaccaccatgacctgctgatgctgggtaggttccacagatggatgtcgtcg 185 | |||||||||| |||||||||||||||||||||||||||||||| | |||||||| || Sbjct: 124 ggcgatggagacgaccatgacctgctgatgctgggtaggttccaccggtggatgtcagcg 183 Query: 186 catcgccggacgtatccgagtgccgccgagaagctgcggcggtttgaggcgtaccgtcgc 245 ||| |||||||||| | |||||||| |||||| ||||||||||||||| |||||||||| Sbjct: 184 catggccggacgtaccatagtgccgctgagaag-tgcggcggtttgaggtgtaccgtcgc 242 Query: 246 aacgtggacctcatcgacgcctccaacagggacgccgagagg-ctgggctatgagctcgg 304 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 243 aacgtggacctcatcgacgcctccaacagggacgccgagaggcctcggctatgagctcgg 302 Query: 305 tgagaacgagttcaccgaccttaccaacgaggagttcatgacacggtatgtcggtgg 361 |||||||||||||||||||| || ||||||||||||||| | |||||||||||||| Sbjct: 303 cgagaacgagttcaccgacctcactaacgaggagttcatggcgcggtatgtcggtgg 359 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 357 ggtggagccggtgctggtggtggtctcatcactactttggccggagatgtcgtggaaggg 416 ||||||||||||| |||||||||||||||||||||||| || |||||||| || || ||| Sbjct: 367 ggtggagccggtgatggtggtggtctcatcactactttagctggagatgttgtcgagggg 426 Query: 417 gtggtatcatccaagaac 434 | || ||||||||||||| Sbjct: 427 gcggcatcatccaagaac 444
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence Length = 268433 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 297 gagctcggtgagaacgagttcaccgaccttaccaacgaggagttcatg 344 ||||||||||||| |||| ||||||||| |||| ||| ||||||||| Sbjct: 152275 gagctcggtgagacggagtacaccgacctcaccaccgacgagttcatg 152322
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 360 ggagccggtgctggtggtggtc 381 |||||||||||||||||||||| Sbjct: 2310159 ggagccggtgctggtggtggtc 2310180
>gb|AY688678.1| Mus musculus plexin D1 (Plxnd1) mRNA, complete cds Length = 5938 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cgtggacctcatcgacgcctc 268 ||||||||||||||||||||| Sbjct: 4561 cgtggacctcatcgacgcctc 4581
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 11004629 cggtggagccggtggtggtggtggt 11004653 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 11004479 cggtggagccggtggtggtggtggt 11004503
>emb|AL732484.13| Mouse DNA sequence from clone RP23-37B7 on chromosome 2, complete sequence Length = 201265 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 296 tgagctcggtgagaacgagttcacc 320 |||||||||||||||| |||||||| Sbjct: 68197 tgagctcggtgagaacaagttcacc 68173
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 128643 cggtggagccggtggtggtggtggt 128619 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 128493 cggtggagccggtggtggtggtggt 128469
>ref|NM_026376.1| Mus musculus plexin D1 (Plxnd1), mRNA Length = 5938 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cgtggacctcatcgacgcctc 268 ||||||||||||||||||||| Sbjct: 4561 cgtggacctcatcgacgcctc 4581
>dbj|AK147513.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1058N16 product:plexin D1, full insert sequence Length = 6907 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cgtggacctcatcgacgcctc 268 ||||||||||||||||||||| Sbjct: 4602 cgtggacctcatcgacgcctc 4622
>gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, complete sequence Length = 167100 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 gatggagaccaccatgacctgctga 153 ||||||| ||||||||||||||||| Sbjct: 164068 gatggaggccaccatgacctgctga 164092
>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence Length = 193254 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 129 gatggagaccaccatgacctgctga 153 ||||||| ||||||||||||||||| Sbjct: 50679 gatggaggccaccatgacctgctga 50703
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 11001392 cggtggagccggtggtggtggtggt 11001416 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 11001242 cggtggagccggtggtggtggtggt 11001266
>dbj|AK129175.1| Mus musculus mRNA for mKIAA0620 protein Length = 6178 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 248 cgtggacctcatcgacgcctc 268 ||||||||||||||||||||| Sbjct: 3866 cgtggacctcatcgacgcctc 3886
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 48114 cggtggagccggtggtggtggtggt 48138 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 356 cggtggagccggtgctggtggtggt 380 |||||||||||||| |||||||||| Sbjct: 47964 cggtggagccggtggtggtggtggt 47988
>gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, complete sequence Length = 187169 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 cgtggacctcatcgacgcctc 268 ||||||||||||||||||||| Sbjct: 16149 cgtggacctcatcgacgcctc 16129
>gb|AC149378.2| Phakopsora pachyrhizi clone JGIAFNA-5A4, complete sequence Length = 37902 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atcatcaaaatcaagtgttc 20 |||||||||||||||||||| Sbjct: 16365 atcatcaaaatcaagtgttc 16384
>gb|AE010354.1| Methanopyrus kandleri AV19 section 53 of 157 of the complete genome Length = 10290 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cggagatgtcgtggaagggg 417 |||||||||||||||||||| Sbjct: 3112 cggagatgtcgtggaagggg 3093
>ref|XM_470991.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 314 gttcaccgaccttaccaacgaggagttc 341 |||||||||||| ||| ||||||||||| Sbjct: 312 gttcaccgacctcacccacgaggagttc 339
>ref|XM_476390.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1059 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 caacgtggacctcatcgacgcctccaac 272 ||||||||||||||||||| ||||||| Sbjct: 204 caacgtggacctcatcgaccgctccaac 231
>ref|NM_001024510.1| Bos taurus coronin, actin binding protein, 1B (CORO1B), mRNA Length = 1865 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 acagggacgccgagaggctg 290 |||||||||||||||||||| Sbjct: 47 acagggacgccgagaggctg 28
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cgaccttaccaacgaggagttcat 343 ||||||| |||||||||||||||| Sbjct: 1124381 cgacctttccaacgaggagttcat 1124404
>ref|XM_545531.2| PREDICTED: Canis familiaris similar to Wiskott-Aldrich syndrome protein interacting protein (LOC488409), mRNA Length = 1690 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 ggagccggtgctggtggtgg 379 |||||||||||||||||||| Sbjct: 235 ggagccggtgctggtggtgg 254
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 tggctcccctcttccgctcg 59 |||||||||||||||||||| Sbjct: 639541 tggctcccctcttccgctcg 639522
>ref|XM_533732.2| PREDICTED: Canis familiaris similar to plexin D1 (LOC476526), mRNA Length = 5781 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 gtggacctcatcgacgcctc 268 |||||||||||||||||||| Sbjct: 4405 gtggacctcatcgacgcctc 4424
>ref|XM_571678.1| Cryptococcus neoformans var. neoformans JEC21 40s ribosomal protein s15 (CNF03840) partial mRNA Length = 740 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cgaccttaccaacgaggagttcat 343 ||||||| |||||||||||||||| Sbjct: 138 cgacctttccaacgaggagttcat 161
>ref|XM_808517.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506975.20) partial mRNA Length = 1125 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ggacctcatcgacgcctccaacag 274 ||||||||||||||||||| |||| Sbjct: 111 ggacctcatcgacgcctccgacag 88
>gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, complete sequence Length = 104948 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 agaccaccatgacctgctgatgct 157 ||||||||| |||||||||||||| Sbjct: 84230 agaccaccaagacctgctgatgct 84253
>ref|XM_501915.1| Yarrowia lipolytica CLIB122, YALI0C16709g predicted mRNA Length = 4011 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgacctgctgatgctgggta 162 |||||||||||||||||||| Sbjct: 2446 tgacctgctgatgctgggta 2427
>gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, complete sequence Length = 201027 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gatgtcgtggaaggggtggt 421 |||||||||||||||||||| Sbjct: 15154 gatgtcgtggaaggggtggt 15173
>gb|BC103376.1| Bos taurus coronin, actin binding protein, 1B, mRNA (cDNA clone MGC:127322 IMAGE:7952173), complete cds Length = 1951 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 acagggacgccgagaggctg 290 |||||||||||||||||||| Sbjct: 59 acagggacgccgagaggctg 40
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 314 gttcaccgaccttaccaacgaggagttc 341 |||||||||||| ||| ||||||||||| Sbjct: 463088 gttcaccgacctcacccacgaggagttc 463061
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 caacgtggacctcatcgacgcctccaac 272 ||||||||||||||||||| ||||||| Sbjct: 463486 caacgtggacctcatcgaccgctccaac 463513
>gb|AC022078.12|AC022078 Homo sapiens 12p BAC RP11-498P8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169416 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atgacctgctgatgctgggt 161 |||||||||||||||||||| Sbjct: 146303 atgacctgctgatgctgggt 146322
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 caacgtggacctcatcgacgcctccaac 272 ||||||||||||||||||| ||||||| Sbjct: 65650 caacgtggacctcatcgaccgctccaac 65677
>gb|BT021806.1| Bos taurus coronin, actin binding protein, 1B (CORO1B), mRNA, complete cds Length = 1865 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 acagggacgccgagaggctg 290 |||||||||||||||||||| Sbjct: 47 acagggacgccgagaggctg 28
>dbj|AK110974.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C02, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 314 gttcaccgaccttaccaacgaggagttc 341 |||||||||||| ||| ||||||||||| Sbjct: 337 gttcaccgacctcacccacgaggagttc 364
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gccggtgctggtggtggtct 382 |||||||||||||||||||| Sbjct: 1271088 gccggtgctggtggtggtct 1271069
>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1567_G09 Length = 121388 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 245 caacgtggacctcatcgacgcctccaac 272 ||||||||||||||||||| ||||||| Sbjct: 17398 caacgtggacctcatcgaccgctccaac 17425
>gb|AY110841.1| Zea mays CL908_1 mRNA sequence Length = 916 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 314 gttcaccgaccttaccaacgaggagttc 341 |||||||||||| |||| |||||||||| Sbjct: 23 gttcaccgacctcaccagcgaggagttc 50
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 314 gttcaccgaccttaccaacgaggagttc 341 |||||||||||| ||| ||||||||||| Sbjct: 101840 gttcaccgacctcacccacgaggagttc 101813
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tgacctgctgatgctgggta 162 |||||||||||||||||||| Sbjct: 2354498 tgacctgctgatgctgggta 2354517 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,854,360 Number of Sequences: 3902068 Number of extensions: 2854360 Number of successful extensions: 62665 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62392 Number of HSP's gapped (non-prelim): 271 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
