ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet15a07 |
|---|---|
| Clone Library Name | barley_pub |
>O13J1_HUMAN (Q8NGT2) Olfactory receptor 13J1| Length = 312 Score = 32.3 bits (72), Expect = 0.59 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +1 Query: 160 RCCGSIAACILTLAVLVGFVALVIYLALHPSKPSFYLQD 276 RCC + + C+ LAV++ F +I++ L P ++ D Sbjct: 233 RCCKAFSTCLAHLAVVLLFYGTIIFMYLKPKSKEAHISD 271
>FAD11_MYCTU (Q10776) Putative fatty-acid--CoA ligase fadD11 (EC 6.2.1.-)| (Acyl-CoA synthetase) Length = 571 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = -2 Query: 394 RRAGSCSRCPPGRSGSATRWSPGRQGREPDR 302 R AG+ RC PGR GS+ R EPDR Sbjct: 5 RGAGAAGRCRPGRFGSSARRHGLADDGEPDR 35
>KGUA_RHIME (Q92QZ2) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 219 Score = 30.0 bits (66), Expect = 2.9 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +1 Query: 235 LALHPSKPSFYLQDIQLRSIDLSDPALSLDVQVTIASRNPNDRVGIYY--KTLHAFTTYR 408 L L S PS + R++ +DP LS+ V VT SR P++ G +Y K++ F R Sbjct: 16 LMLVISSPSGAGKSTIARNLLEADPDLSISVSVTTRSRRPSEIEGRHYFFKSIREFEALR 75
>PCDLK_HUMAN (Q9BYE9) Protocadherin LKC precursor (PC-LKC)| Length = 1310 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 295 DLSDPALSLDVQVTIASRNPNDRVGIYYKTLHAFTTYRDEP 417 D +P L V VTI + ND + I+ ++ + FT ++P Sbjct: 669 DCGEPVLGTKVNVTITVEDINDNLPIFNQSSYNFTVKEEDP 709
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 29.3 bits (64), Expect = 5.0 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = -2 Query: 394 RRAGSCSRCPPGRSGSATRWSPGRQGREPDRRGR 293 RRAGS R PP R+GS R P G GR Sbjct: 931 RRAGSRERIPPRRAGSRERGPPRGPGSRERGLGR 964
>ITPR3_HUMAN (Q14573) Inositol 1,4,5-trisphosphate receptor type 3 (Type 3| inositol 1,4,5-trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3) Length = 2671 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +1 Query: 79 THTHTHQSPVDQVTMSKGKVHH-DWILRRCCGSIAACILTLAVLVGFVALVIYLAL 243 T THQ+ V Q+ S ++ W+ ++ GS+ ACI TLA++ A+++ + L Sbjct: 1489 TSLQTHQTIVVQLLQSTTRLLECPWLQQQHKGSVEACIRTLAMVAKGRAILLPMDL 1544
>ITPR3_RAT (Q63269) Inositol 1,4,5-trisphosphate receptor type 3 (Type 3| inositol 1,4,5-trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3) (IP3R-3) Length = 2670 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +1 Query: 79 THTHTHQSPVDQVTMSKGKVHH-DWILRRCCGSIAACILTLAVLVGFVALVIYLAL 243 T THQ+ V Q+ S ++ W+ ++ GS+ AC+ TLA++ A+++ + L Sbjct: 1489 TSLQTHQTIVVQLLQSTTRLLECPWLQQQHKGSVEACVRTLAMVAKSRAILLPMDL 1544
>ITPR3_MOUSE (P70227) Inositol 1,4,5-trisphosphate receptor type 3 (Type 3| inositol 1,4,5-trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3) Length = 2670 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +1 Query: 79 THTHTHQSPVDQVTMSKGKVHH-DWILRRCCGSIAACILTLAVLVGFVALVIYLAL 243 T THQ+ V Q+ S ++ W+ ++ GS+ AC+ TLA++ A+++ + L Sbjct: 1489 TSLQTHQTIVVQLLQSTTRLLECPWLQQQHKGSVEACVRTLAMVAKSRAILLPMDL 1544
>CRYD_XENLA (Q75WS4) Cryptochrome DASH| Length = 523 Score = 28.5 bits (62), Expect = 8.6 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%) Frame = +1 Query: 235 LALHPSKPSFYLQDI-----QLRSIDLSDPALSLDVQVTIASRNPNDRVGIYYKTLHAFT 399 L L KP ++D+ + ++ L + A + V A + R+GI Y+T T Sbjct: 82 LLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRLGIKYQTFWGST 141 Query: 400 TY--RDEPVTVPVSLPAIY 450 Y D P SLP +Y Sbjct: 142 LYHREDLPFRHISSLPDVY 160
>GLK_BRUME (Q8YDC6) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 343 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 399 GEGVQGLVVDAHPVVRVPRRDGHLDV 322 G GV GLV H V VP GH+D+ Sbjct: 149 GLGVAGLVCTRHAWVPVPGEGGHIDI 174
>FIBA_BOVIN (P02672) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide| A] Length = 615 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = -2 Query: 385 GSCSRCPPGRS--GSATRWSPGRQGREPDRRGRWS 287 GS PGR GSA W+PGR EP G W+ Sbjct: 347 GSAGTWNPGRPEPGSAGTWNPGRP--EPGSAGTWN 379 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = -2 Query: 385 GSCSRCPPGRS--GSATRWSPGRQGREPDRRGRWS 287 GS PGR GSA W+PGR EP G W+ Sbjct: 321 GSAGTWNPGRPEPGSAGTWNPGRP--EPGSAGTWN 353
>RPOB_MYCGE (P47583) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1390 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +1 Query: 268 LQDIQLRSIDLSDPALSLDVQVTIAS----RNPNDRVGIYYKTLHAFTTYRDE 414 L DIQ++S L D++ IAS ++PNDR I ++ LH RDE Sbjct: 33 LADIQIKSYQ---KFLDHDLEKLIASYFPIKSPNDRYTINFRGLHRTEPERDE 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,996,087 Number of Sequences: 219361 Number of extensions: 816214 Number of successful extensions: 2958 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2943 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
