ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet14d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEL1_ARATH (Q940Q1) Probable pectate lyase 1 precursor (EC 4.2.2... 29 5.1
2ABCAC_HUMAN (Q86UK0) ATP-binding cassette sub-family A member 12... 29 5.1
3GATB_RHILO (Q98ND3) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 29 5.1
4UL36_HCMVA (P16767) Hypothetical protein UL36 29 6.7

>PEL1_ARATH (Q940Q1) Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate|
           lyase A1)
          Length = 431

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 140 GWDWRAIPQLLSSACIFICSGGCLGCCEKAAKHVGDLSKSLMAH 271
           GW+WR+   LL +   F  SG         A  +   S SL+ H
Sbjct: 370 GWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGH 413



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>ABCAC_HUMAN (Q86UK0) ATP-binding cassette sub-family A member 12 (ATP-binding|
            cassette transporter 12) (ATP-binding cassette 12)
          Length = 2595

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 212  GCCE-KAAKHVGDLSKSLMAHAQNPTVAEEFWSTTTIEVDPADLRAPMNTSSWDLDLHGV 388
            GC E K  K  G +  ++M    NP+ + E+  ++ IE +P DL          + LHGV
Sbjct: 1299 GCAEVKPEKSNGLMFTNIMMQNTNPSASPEYMFSSNIEPEPKDLTV-------GVALHGV 1351



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>GATB_RHILO (Q98ND3) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 499

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 437 KEKNHD*QIRPGYDCFPLHADQGPKRTCSLVLGDLPDQPRWWLYSKIPLPPWDS 276
           KE+ HD +  P  D  PL  DQ      +  L +LPD  +  L + + L  +D+
Sbjct: 287 KEEAHDYRYFPDPDLLPLEFDQAYVDALAKELPELPDDKKARLITSLGLSTYDA 340



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>UL36_HCMVA (P16767) Hypothetical protein UL36|
          Length = 476

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 267 AIKLLERSPTCFAAFSQHPKQPPEQMKMQAEE 172
           AI  LE++PTC     QHPK+ P+ M M  E+
Sbjct: 303 AIVRLEKTPTC-----QHPKKTPDPMIMFDED 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,841,064
Number of Sequences: 219361
Number of extensions: 1272608
Number of successful extensions: 4533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4533
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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