Clone Information

BLAST Search Result

Clone Name	baet133g04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BC029945.1\| Homo sapiens, clone IMAGE:5196752, mRNA	402	e-109
2	dbj\|AK061946.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
3	gb\|AF318581.1\|AF318581 Oryza sativa putative transcription facto...	135	1e-28
4	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	135	1e-28
5	dbj\|AP005688.3\| Oryza sativa (japonica cultivar-group) genomic D...	135	1e-28
6	dbj\|AK122161.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
7	dbj\|AK098915.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
8	dbj\|AK098909.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
9	dbj\|AK065184.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	135	1e-28
10	gb\|AF318580.1\|AF318580 Zea mays putative transcription factor Zm...	111	2e-21
11	gb\|AY988106.1\| Zea mays golden2-like transcription factor gene, ...	103	5e-19
12	emb\|AL939105.1\|SCO939105 Streptomyces coelicolor A3(2) complete ...	44	0.41
13	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	44	0.41
14	ref\|NM_188697.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.6
15	gb\|CP000125.1\| Burkholderia pseudomallei 1710b chromosome II, co...	42	1.6
16	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	42	1.6
17	gb\|AF318583.1\|AF318583 Oryza sativa putative transcription facto...	42	1.6
18	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
19	dbj\|AP002855.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
20	dbj\|AK121019.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
21	dbj\|AK109503.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
22	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	42	1.6
23	gb\|CP000096.1\| Pelodictyon luteolum DSM 273, complete genome	40	6.3
24	ref\|XM_479693.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.3
25	ref\|XM_479692.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.3
26	ref\|XM_478876.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.3
27	gb\|CP000356.1\| Sphingopyxis alaskensis RB2256, complete genome	40	6.3
28	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	6.3
29	gb\|AE007278.1\| Sinorhizobium meliloti 1021 plasmid pSymA section...	40	6.3
30	gb\|AY228549.1\| Rattus norvegicus T-cell receptor beta chain mRNA...	40	6.3
31	gb\|AC117214.3\| Mus musculus BAC clone RP23-307B15 from chromosom...	40	6.3
32	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	6.3
33	emb\|BX640443.1\| Bordetella bronchiseptica strain RB50, complete ...	40	6.3
34	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	6.3
35	emb\|AL606598.3\|OSJN00036 Oryza sativa genomic DNA, chromosome 4,...	40	6.3
36	emb\|AL606453.2\|OSJN00010 Oryza sativa genomic DNA, chromosome 4,...	40	6.3
37	emb\|AL583917.1\|MLEPRTN1 Mycobacterium leprae strain TN complete ...	40	6.3
38	emb\|AL023093.1\|MLCB2548 Mycobacterium leprae cosmid B2548	40	6.3
39	emb\|X14319.1\|RRTCRBR Rat mRNA for T-cell receptor beta chain	40	6.3
40	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	6.3
41	gb\|CP000011.2\| Burkholderia mallei ATCC 23344 chromosome 2, comp...	40	6.3
42	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
43	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
44	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
45	dbj\|AB109215.1\| Hordeum vulgare BRI1 gene for putative brassinos...	40	6.3
46	dbj\|AB109214.1\| Hordeum vulgare subsp. spontaneum BRI1 gene for ...	40	6.3
47	dbj\|AB109213.1\| Hordeum vulgare BRI1 gene for putative brassinos...	40	6.3
48	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.3
49	dbj\|AP004276.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
50	gb\|AE005028.1\| Halobacterium sp. NRC-1 section 59 of 170 of the ...	40	6.3
51	dbj\|AP004462.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
52	dbj\|AP003909.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
53	dbj\|AB088206.1\| Hordeum vulgare BRI1 mRNA for putative brassinos...	40	6.3
54	dbj\|AK106748.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
55	dbj\|AK067200.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
56	dbj\|AK065355.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
57	emb\|X80528.1\|RNMBPV82 R.norvegicus MBP13 Vbeta8.2 gene	40	6.3
58	emb\|X59447.1\|RRTCRVDJ R.rattus RNA for VDJ region of beta chain ...	40	6.3
59	emb\|X14973.1\|RNTRBZ82 Rat TCL Z82 TCR-beta chain gene V(beta)8.2...	40	6.3
60	gb\|AF083072.1\|AF083072 Cenarchaeum symbiosum strain B histone H1...	40	6.3
61	gb\|AC173344.2\| Mus musculus BAC clone RP23-222L16 from chromosom...	40	6.3
62	gb\|DQ298808.1\| Uncultured bacterium clone hyd-A2 Fe-hydrogenase ...	40	6.3
63	gb\|AY701054.2\| Streptomyces rimosus rimocidin synthase (rms) gen...	40	6.3
64	gb\|U06100.1\|RNU06100 Rattus norvegicus clone Vb8A T-cell recepto...	40	6.3
65	gb\|M74473.1\|RATTCBXA8B Rat T-cell receptor rearranged beta-chain...	40	6.3
66	gb\|M74472.1\|RATTCBXA8A Rat T-cell receptor rearranged beta-chain...	40	6.3

>gb|BC029945.1| Homo sapiens, clone IMAGE:5196752, mRNA
          Length = 409

 Score =  402 bits (203), Expect = e-109
 Identities = 238/249 (95%), Gaps = 3/249 (1%)
 Strand = Plus / Plus

                                                                       
Query: 164 ggccgacatgcttgccgtgtcctccgcgaggtgcctggccgccgacgcggacgagcagcg 223
           |||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||
Sbjct: 164 ggccgacatgcttgccgtgtcctccgcgaggtgcctcgccgccg---cggacgagcagcg 220

                                                                       
Query: 224 tgccgaggccgcgcccatggagacggtcgggggcgcagcggtggtggccgacctggacat 283
            |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 221 cgccgaggccgcgcccatggagacggttgggggtgcagcggtggtggcggacctggacat 280

                                                                       
Query: 284 agacttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagagga 343
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 281 agacttcgacttcaccgtcgatgacatagacttcggggacttcttcctcaggctagagga 340

                                                                       
Query: 344 cggcgacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 341 cggcgacgcgctgccggacctggaggtcgaccccgccgacatcttcaccgatctggaggc 400

                    
Query: 404 ggcggccgc 412
           |||||||||
Sbjct: 401 ggcggccgc 409



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 38 gcatgccggtttaagttcggcgctcaaatcgggactgc 75
          |||||||||| ||||||| |||||||||||||| ||||
Sbjct: 11 gcatgccggtgtaagttcagcgctcaaatcgggcctgc 48

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>dbj|AK061946.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E04, full
           insert sequence
          Length = 1879

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
           ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 338 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 397

                                                                   
Query: 348 gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 398 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 453

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>gb|AF318581.1|AF318581 Oryza sativa putative transcription factor OsGLK1 (Glk1) mRNA,
           complete cds
          Length = 1965

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
           ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 323 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 382

                                                                   
Query: 348 gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 383 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 438

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                            
Query: 288      ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
                ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 13921397 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 13921456

                                                                        
Query: 348      gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
                || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 13921457 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 13921512

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>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031J07
          Length = 172511

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                         
Query: 288   ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
             ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 38617 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 38676

                                                                     
Query: 348   gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
             || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 38677 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 38732

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>dbj|AK122161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147G01, full
           insert sequence
          Length = 1816

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
           ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 341 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 400

                                                                   
Query: 348 gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 401 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 456

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>dbj|AK098915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I19, full
           insert sequence
          Length = 1616

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
           ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 205 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 264

                                                                   
Query: 348 gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 265 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 320

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>dbj|AK098909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F22, full
           insert sequence
          Length = 1746

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
           ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 205 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 264

                                                                   
Query: 348 gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 265 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 320

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>dbj|AK065184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D22, full
           insert sequence
          Length = 1746

 Score =  135 bits (68), Expect = 1e-28
 Identities = 104/116 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacggc 347
           ||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 205 ttcgacttctccgtcgatgacatagacttcggggacttcttcctgaggctggaggacggt 264

                                                                   
Query: 348 gacgcgctgccggacctcgaggtcgaccccgccgacatcttcaccgatctcgaggc 403
           || | ||| |||||||||||||||||||| ||||| |||||||||||  |||||||
Sbjct: 265 gatgtgctcccggacctcgaggtcgacccggccgagatcttcaccgacttcgaggc 320

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>gb|AF318580.1|AF318580 Zea mays putative transcription factor ZmGLK1 (Glk1) mRNA, complete
           cds
          Length = 1843

 Score =  111 bits (56), Expect = 2e-21
 Identities = 88/98 (89%), Gaps = 3/98 (3%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacgg- 346
           ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 283 ttcgacttcacggtcgacgacatagacttcggggacttcttcctcaggctagacgacggg 342

                                                 
Query: 347 --cgacgcgctgccggacctcgaggtcgaccccgccga 382
              ||||||||||||| ||||||||||||||| |||||
Sbjct: 343 gatgacgcgctgccgggcctcgaggtcgaccctgccga 380

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>gb|AY988106.1| Zea mays golden2-like transcription factor gene, complete cds
          Length = 2379

 Score =  103 bits (52), Expect = 5e-19
 Identities = 87/98 (88%), Gaps = 3/98 (3%)
 Strand = Plus / Plus

                                                                       
Query: 288 ttcgacttcaccgtcgatgacatagacttcggggatttcttcctcaggctagaggacgg- 346
           ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct: 279 ttcgacttcacggtcgacgacatagacttcggggacttcttcctcaggctagacgacggg 338

                                                 
Query: 347 --cgacgcgctgccggacctcgaggtcgaccccgccga 382
              ||||||||||||| ||||| ||||||||| |||||
Sbjct: 339 gatgacgcgctgccgggcctcggggtcgaccctgccga 376

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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 356    gccggacctcgaggtcgacccc 377
              ||||||||||||||||||||||
Sbjct: 207343 gccggacctcgaggtcgacccc 207364

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 347     cgacgcgctgccggacctcgag 368
               ||||||||||||||||||||||
Sbjct: 3032618 cgacgcgctgccggacctcgag 3032597

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>ref|NM_188697.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1542

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 357 ccggacctcgaggtcgacccc 377
           |||||||||||||||||||||
Sbjct: 217 ccggacctcgaggtcgacccc 237

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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 346     gcgacgcgctgccggacctcg 366
               |||||||||||||||||||||
Sbjct: 1388578 gcgacgcgctgccggacctcg 1388558

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 346     gcgacgcgctgccggacctcg 366
               |||||||||||||||||||||
Sbjct: 2706067 gcgacgcgctgccggacctcg 2706047

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>gb|AF318583.1|AF318583 Oryza sativa putative transcription factor OsGLK2 (Glk2) gene, exon
           1 and partial cds
          Length = 789

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 357 ccggacctcgaggtcgacccc 377
           |||||||||||||||||||||
Sbjct: 373 ccggacctcgaggtcgacccc 393

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 357     ccggacctcgaggtcgacccc 377
               |||||||||||||||||||||
Sbjct: 7692205 ccggacctcgaggtcgacccc 7692185

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>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0086P08
          Length = 145312

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 357    ccggacctcgaggtcgacccc 377
              |||||||||||||||||||||
Sbjct: 102781 ccggacctcgaggtcgacccc 102761

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>dbj|AK121019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049D13, full
           insert sequence
          Length = 2378

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 357 ccggacctcgaggtcgacccc 377
           |||||||||||||||||||||
Sbjct: 578 ccggacctcgaggtcgacccc 598

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>dbj|AK109503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A09, full
           insert sequence
          Length = 1335

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 357 ccggacctcgaggtcgacccc 377
           |||||||||||||||||||||
Sbjct: 778 ccggacctcgaggtcgacccc 798

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 225     gccgaggccgcgcccatggag 245
               |||||||||||||||||||||
Sbjct: 1525167 gccgaggccgcgcccatggag 1525187

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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     tggccgccgacgcggacgag 218
               ||||||||||||||||||||
Sbjct: 1752534 tggccgccgacgcggacgag 1752515

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>ref|XM_479693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 398 cgaggcggcggccgcgggcg 417
           ||||||||||||||||||||
Sbjct: 797 cgaggcggcggccgcgggcg 816

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>ref|XM_479692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 398 cgaggcggcggccgcgggcg 417
           ||||||||||||||||||||
Sbjct: 797 cgaggcggcggccgcgggcg 816

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>ref|XM_478876.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 ctcgaggcggcggccgcggg 415
           ||||||||||||||||||||
Sbjct: 672 ctcgaggcggcggccgcggg 653

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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 360    gacctcgaggtcgaccccgc 379
              ||||||||||||||||||||
Sbjct: 707143 gacctcgaggtcgaccccgc 707162

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     gacttcgacttcaccgtcga 304
               ||||||||||||||||||||
Sbjct: 3906833 gacttcgacttcaccgtcga 3906852

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>gb|AE007278.1| Sinorhizobium meliloti 1021 plasmid pSymA section 84 of 121 of the
            complete plasmid sequence
          Length = 10802

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  cccatggagacggtcggggg 256
            ||||||||||||||||||||
Sbjct: 3916 cccatggagacggtcggggg 3897

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>gb|AY228549.1| Rattus norvegicus T-cell receptor beta chain mRNA, complete cds
          Length = 912

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 268 ggggatttcttcctcacgctagag 291

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>gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosome 9, complete sequence
          Length = 219833

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    ggggatttcttcctcaggct 337
              ||||||||||||||||||||
Sbjct: 162616 ggggatttcttcctcaggct 162597

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     gccgacgcggacgagcagcg 223
               ||||||||||||||||||||
Sbjct: 3596144 gccgacgcggacgagcagcg 3596125

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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 442    tgccgtgcgccttcttggcggccg 465
              ||||| ||||||||||||||||||
Sbjct: 203456 tgccgggcgccttcttggcggccg 203479

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 285     gacttcgacttcaccgtcga 304
               ||||||||||||||||||||
Sbjct: 3648645 gacttcgacttcaccgtcga 3648664

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>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16,
            complete sequence
          Length = 114051

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 391  ccgatctcgaggcggcggccgcgg 414
            ||||||||||||||||||| ||||
Sbjct: 3472 ccgatctcgaggcggcggcggcgg 3449

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>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 391   ccgatctcgaggcggcggccgcgg 414
             ||||||||||||||||||| ||||
Sbjct: 79766 ccgatctcgaggcggcggcggcgg 79743

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>emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete genome; segment 1/10
          Length = 344050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    agcagcgtgccgaggccgcg 236
              ||||||||||||||||||||
Sbjct: 296143 agcagcgtgccgaggccgcg 296162

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>emb|AL023093.1|MLCB2548 Mycobacterium leprae cosmid B2548
          Length = 38916

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  agcagcgtgccgaggccgcg 236
            ||||||||||||||||||||
Sbjct: 5895 agcagcgtgccgaggccgcg 5876

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>emb|X14319.1|RRTCRBR Rat mRNA for T-cell receptor beta chain
          Length = 1028

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 157 ggggatttcttcctcacgctagag 180

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 186     tccgcgaggtgcctggccgc 205
               ||||||||||||||||||||
Sbjct: 1206460 tccgcgaggtgcctggccgc 1206441

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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    gacttcgacttcaccgtcga 304
              ||||||||||||||||||||
Sbjct: 535240 gacttcgacttcaccgtcga 535221

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 391      ccgatctcgaggcggcggccgcgg 414
                ||||||||||||||||||| ||||
Sbjct: 20569138 ccgatctcgaggcggcggcggcgg 20569115

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    cgaggcggcggccgcgggcg 417
              ||||||||||||||||||||
Sbjct: 296898 cgaggcggcggccgcgggcg 296879

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 396      ctcgaggcggcggccgcggg 415
                ||||||||||||||||||||
Sbjct: 23430928 ctcgaggcggcggccgcggg 23430947

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>dbj|AB109215.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive
           1, complete cds, cultivar:Akashinriki
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gcgctgccggacctcgaggt 370
           ||||||||||||||||||||
Sbjct: 979 gcgctgccggacctcgaggt 998

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>dbj|AB109214.1| Hordeum vulgare subsp. spontaneum BRI1 gene for putative
           brassinosteroid-insensitive 1, complete cds, strain:H602
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gcgctgccggacctcgaggt 370
           ||||||||||||||||||||
Sbjct: 979 gcgctgccggacctcgaggt 998

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>dbj|AB109213.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive
           1, complete cds, cultivar:Haruna Nijo
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gcgctgccggacctcgaggt 370
           ||||||||||||||||||||
Sbjct: 979 gcgctgccggacctcgaggt 998

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     cccgccgacatcttcaccga 394
               ||||||||||||||||||||
Sbjct: 1393748 cccgccgacatcttcaccga 1393767

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>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453G03
          Length = 144480

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   ctcgaggcggcggccgcggg 415
             ||||||||||||||||||||
Sbjct: 50825 ctcgaggcggcggccgcggg 50844

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>gb|AE005028.1| Halobacterium sp. NRC-1 section 59 of 170 of the complete genome
          Length = 13408

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 339  gaggacggcgacgcgctgccggacctcgaggt 370
            |||||||||||||||||  ||||| |||||||
Sbjct: 3928 gaggacggcgacgcgctcgcggacgtcgaggt 3959

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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 398  cgaggcggcggccgcgggcg 417
            ||||||||||||||||||||
Sbjct: 6412 cgaggcggcggccgcgggcg 6393

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>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1300_E01
          Length = 103022

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   cgaggcggcggccgcgggcg 417
             ||||||||||||||||||||
Sbjct: 63324 cgaggcggcggccgcgggcg 63305

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>dbj|AB088206.1| Hordeum vulgare BRI1 mRNA for putative brassinosteroid-insensitive
           protein 1, complete cds
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 gcgctgccggacctcgaggt 370
           ||||||||||||||||||||
Sbjct: 979 gcgctgccggacctcgaggt 998

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>dbj|AK106748.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-C06, full
           insert sequence
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 ctcgaggcggcggccgcggg 415
           ||||||||||||||||||||
Sbjct: 672 ctcgaggcggcggccgcggg 653

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>dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097P19, full
           insert sequence
          Length = 2151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 398 cgaggcggcggccgcgggcg 417
           ||||||||||||||||||||
Sbjct: 797 cgaggcggcggccgcgggcg 816

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>dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014E16, full
           insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 398 cgaggcggcggccgcgggcg 417
           ||||||||||||||||||||
Sbjct: 797 cgaggcggcggccgcgggcg 816

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>emb|X80528.1|RNMBPV82 R.norvegicus MBP13 Vbeta8.2 gene
          Length = 377

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 217 ggggatttcttcctcacgctagag 240

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>emb|X59447.1|RRTCRVDJ R.rattus RNA for VDJ region of beta chain from T-cell receptor
          Length = 400

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 213 ggggatttcttcctcacgctagag 236

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>emb|X14973.1|RNTRBZ82 Rat TCL Z82 TCR-beta chain gene V(beta)8.2-D(beta)1.1-J(beta)1.1
          Length = 1043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 909 ggggatttcttcctcacgctagag 932

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>gb|AF083072.1|AF083072 Cenarchaeum symbiosum strain B histone H1 DNA binding protein (hc2),
             hypothetical protein, lysyl tRNA synthetase (syk), and
             hypothetical protein 01 genes, complete cds; 23S ribosomal
             RNA and 16S ribosomal RNA genes, complete sequence;
             glutamate-1-semialdehyde aminotransferase (gsat) and
             hypothetical protein 02 genes, complete cds; tRNA-Tyr
             gene, complete sequence; triose phosphate isomerase (tim),
             TATA box binding protein (TF2D), archael family B DNA
             polymerase B (pol1), dCMP deaminase (dcdt), ATP-dependent
             RNA helicase, hypothetical protein 03, menaquinone
             biosynthesis protein (mena), and site-specific DNA
             methyltransferase genes, complete cds; and unknown genes
          Length = 42432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   gacgcgctgccggacctcga 367
             ||||||||||||||||||||
Sbjct: 25297 gacgcgctgccggacctcga 25316

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>gb|AC173344.2| Mus musculus BAC clone RP23-222L16 from chromosome 17, complete
             sequence
          Length = 191106

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     acagcacagcacagccacag 20
             ||||||||||||||||||||
Sbjct: 10748 acagcacagcacagccacag 10767

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>gb|DQ298808.1| Uncultured bacterium clone hyd-A2 Fe-hydrogenase (hyd) mRNA,
           partial cds
          Length = 660

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 tcgaccccgccgacatcttc 389
           ||||||||||||||||||||
Sbjct: 191 tcgaccccgccgacatcttc 210

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>gb|AY701054.2| Streptomyces rimosus rimocidin synthase (rms) gene, partial cds
          Length = 8939

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  gaggacggcgacgcgctgcc 358
            ||||||||||||||||||||
Sbjct: 5683 gaggacggcgacgcgctgcc 5702

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>gb|U06100.1|RNU06100 Rattus norvegicus clone Vb8A T-cell receptor beta-chain V region
           mRNA, partial cds
          Length = 282

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 214 ggggatttcttcctcacgctagag 237

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>gb|M74473.1|RATTCBXA8B Rat T-cell receptor rearranged beta-chain (V8.2-D1-J2.3) mRNA,
           partial cds
          Length = 344

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 222 ggggatttcttcctcacgctagag 245

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>gb|M74472.1|RATTCBXA8A Rat T-cell receptor rearranged beta-chain (V8.2-D1-J1.1) mRNA,
           partial cds
          Length = 347

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 318 ggggatttcttcctcaggctagag 341
           |||||||||||||||| |||||||
Sbjct: 222 ggggatttcttcctcacgctagag 245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,906,791
Number of Sequences: 3902068
Number of extensions: 2906791
Number of successful extensions: 77580
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75217
Number of HSP's gapped (non-prelim): 2360
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result