ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet133b07 |
|---|---|
| Clone Library Name | barley_pub |
>PSAH_HORVU (P20143) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 143 Score = 185 bits (469), Expect = 6e-47 Identities = 97/136 (71%), Positives = 97/136 (71%) Frame = +2 Query: 53 MASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDLD 232 MASLVAVQPAAVKGLSGSSISGRKL KYGEKSVYFDLD Sbjct: 1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60 Query: 233 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSASA 412 DIANTTGQWDLYGSDA SPYNGLQSKFFNTFAAPFTKR VAYVSASA Sbjct: 61 DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA 120 Query: 413 SPDLLPIKKGAQLPPT 460 SPDLLPIKKG QLPPT Sbjct: 121 SPDLLPIKKGPQLPPT 136
>PSAH_ORYSA (P22181) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein) Length = 142 Score = 163 bits (412), Expect = 2e-40 Identities = 89/136 (65%), Positives = 91/136 (66%) Frame = +2 Query: 53 MASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDLD 232 MASLVAVQP AVKGL+GSSISGRKL KYGEKSVYFDL+ Sbjct: 1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVA-KYGEKSVYFDLE 59 Query: 233 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSASA 412 DI NTTGQWDLY SDA SPYN LQSKFF TFA PFTKR VAYVSASA Sbjct: 60 DIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASA 119 Query: 413 SPDLLPIKKGAQLPPT 460 SPDLLPIKKG QLPPT Sbjct: 120 SPDLLPIKKGPQLPPT 135
>PSAH_MAIZE (O65101) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 142 Score = 154 bits (390), Expect = 8e-38 Identities = 85/137 (62%), Positives = 91/137 (66%), Gaps = 2/137 (1%) Frame = +2 Query: 53 MASL--VAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 MASL V+V+P A+KGL+GSSISGRKL KYG+KSVYFD Sbjct: 1 MASLAAVSVKPVAIKGLAGSSISGRKLAVARPSARSIRRPRAAAVVA---KYGDKSVYFD 57 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSA 406 LDDI NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR +AYVSA Sbjct: 58 LDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSA 117 Query: 407 SASPDLLPIKKGAQLPP 457 SASPDLLPIKKG Q PP Sbjct: 118 SASPDLLPIKKGPQEPP 134
>PSAH_SPIOL (P22179) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 144 Score = 139 bits (351), Expect = 3e-33 Identities = 73/136 (53%), Positives = 86/136 (63%) Frame = +2 Query: 50 AMASLVAVQPAAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFDL 229 ++A+L AVQP +KGL+GSSI+G KL KYG+KSVYFDL Sbjct: 3 SLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVA--KYGDKSVYFDL 60 Query: 230 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 409 +DIANTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR + YVSA+ Sbjct: 61 EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120 Query: 410 ASPDLLPIKKGAQLPP 457 A D+LPI +G Q PP Sbjct: 121 APQDVLPITRGPQQPP 136
>PSAH2_ARATH (Q9SUI6) Photosystem I reaction center subunit VI-2, chloroplast| precursor (PSI-H1) Length = 145 Score = 135 bits (341), Expect = 4e-32 Identities = 72/137 (52%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Frame = +2 Query: 50 AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 + A++ AVQP AAVKGL GSS++G KL KYG+KSVYFD Sbjct: 3 SFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVA--KYGDKSVYFD 60 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSA 406 L+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR + YVSA Sbjct: 61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120 Query: 407 SASPDLLPIKKGAQLPP 457 +++ D+LPIK+G Q PP Sbjct: 121 NSTGDVLPIKRGPQEPP 137
>PSAH_BRARA (O04006) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 145 Score = 133 bits (334), Expect = 3e-31 Identities = 72/137 (52%), Positives = 86/137 (62%), Gaps = 1/137 (0%) Frame = +2 Query: 50 AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 + A++ AVQP +AVKGL GSS++G KL KYG+KSVYFD Sbjct: 3 SFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVA--KYGDKSVYFD 60 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSA 406 L+D+ NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR + YVSA Sbjct: 61 LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120 Query: 407 SASPDLLPIKKGAQLPP 457 S++ D+LPIK+G Q P Sbjct: 121 SSTGDVLPIKRGPQEKP 137
>PSAH1_ARATH (Q9SUI7) Photosystem I reaction center subunit VI-1, chloroplast| precursor (PSI-H1) Length = 145 Score = 131 bits (330), Expect = 7e-31 Identities = 69/137 (50%), Positives = 88/137 (64%), Gaps = 1/137 (0%) Frame = +2 Query: 50 AMASLVAVQP-AAVKGLSGSSISGRKLXXXXXXXXXXXXXXXXXXXXXXXKYGEKSVYFD 226 ++A++ AV+P AA+KGL GSS++G KL KYG+KSVYFD Sbjct: 3 SLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVA--KYGDKSVYFD 60 Query: 227 LDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSA 406 L+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR + YVSA Sbjct: 61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120 Query: 407 SASPDLLPIKKGAQLPP 457 +++ ++LPIK+G Q PP Sbjct: 121 TSTGEVLPIKRGPQEPP 137
>PSAH_PEA (P20121) Photosystem I reaction center subunit VI (PSI-H)| (Light-harvesting complex I 11 kDa protein) (Fragment) Length = 36 Score = 69.7 bits (169), Expect = 3e-12 Identities = 30/36 (83%), Positives = 33/36 (91%) Frame = +2 Query: 197 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQ 304 KYG+KSVYFDL+DI NTTGQWDLYGSDA SPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36
>PSAH_CHLRE (P13352) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (P28 protein) Length = 130 Score = 60.1 bits (144), Expect = 3e-09 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +2 Query: 197 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 376 KYGE S YFDL D+ NTTG WD+YG D Y Q+KFF ++R Sbjct: 31 KYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESLRALVALS 90 Query: 377 XXXXVAYVSASASPDL-LPIKKGAQ 448 + + D LPI KG Q Sbjct: 91 GIAAIVTYGLKGAKDADLPITKGPQ 115
>PSAH_CUCSA (P42050) Photosystem I reaction center subunit VI, chloroplast| (PSI-H) (Photosystem I 7.6 kDa protein) (PS I subunit 9B) (Fragment) Length = 24 Score = 33.1 bits (74), Expect = 0.36 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +2 Query: 200 YGEKSVYFDLDDIANTTGQWDLY 268 Y +KSVYFDL+D NT GQ Y Sbjct: 2 YXDKSVYFDLEDKGNTXGQXXXY 24
>YBGQ_ECOLI (P75750) Hypothetical outer membrane usher protein ybgQ precursor| Length = 815 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +2 Query: 242 NTTGQWDLYGSDAASPYNGLQSKFFNTFAA 331 ++ G+WD+ G+ AAS Y+ + S + +F A Sbjct: 614 SSAGEWDISGTYAASDYSSVSSSWSGSFTA 643
>GP33_BPSP1 (P06226) Gene 33 protein| Length = 101 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +2 Query: 224 DLDDIANTTGQWDLYGSDAASPYNGLQSKF 313 +L+ + N T +D+Y S+A + GL++KF Sbjct: 7 ELEKVRNHTEDYDVYNSEAERTFRGLKAKF 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.131 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,177,318 Number of Sequences: 219361 Number of extensions: 479717 Number of successful extensions: 1685 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1645 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1680 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
