ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet132c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome... 216 5e-53
2gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome... 216 5e-53
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 216 5e-53
4dbj|AK108453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
5dbj|AK099865.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
6dbj|AK073234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
8dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
9dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
10dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.42
11gb|AC164648.3| Mus musculus BAC clone RP23-434H4 from chromosome... 40 6.6
12gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.6
13gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.6
14ref|NM_181682.1| Mus musculus desmoglein 1 beta (Dsg1b), mRNA 40 6.6
15gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, com... 40 6.6
16gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 6.6
17gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.6
18gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, comp... 40 6.6
19gb|AC125205.4| Mus musculus BAC clone RP23-238I2 from 14, comple... 40 6.6
20emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on... 40 6.6
21gb|AY315940.1| Mus musculus desmoglein 1beta (Dsg1b) mRNA, compl... 40 6.6
22gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, com... 40 6.6
23gb|AY192158.1| Mus musculus desmoglein 5 (Dsg5) mRNA, complete cds 40 6.6
24emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.6
25emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.6
26gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.6
27dbj|AK081473.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.6
28dbj|AK016043.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.6
29gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.6
30dbj|AK036986.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 6.6
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
32gb|AC091633.22| Homo sapiens 3 BAC RP11-506F8 (Roswell Park Canc... 40 6.6
33gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y... 40 6.6
34gb|AF157641.2|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (h... 40 6.6
35emb|AJ538734.1|NTA538734 Nicotiana tabacum cDNA-AFLP-fragment BC... 40 6.6
36dbj|AK067635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
37emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 6.6
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
39emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial se... 40 6.6 
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
            OSJNBa0034M22, complete sequence
          Length = 149435

 Score =  216 bits (109), Expect = 5e-53
 Identities = 217/253 (85%)
 Strand = Plus / Minus

                                                                        
Query: 234  ctgtttgccggtgggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacg 293
            ||||| ||||| |||||||| | ||||||||  ||||| |||||||||||||||||||||
Sbjct: 3143 ctgttcgccggcgggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacg 3084

                                                                        
Query: 294  gggcagacgggtgtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgcc 353
            |||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 3083 gggcaggcgggagttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgcc 3024

                                                                        
Query: 354  ggggttccagacctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactc 413
            ||||| || ||||||| ||| || |||||| |||| ||||| ||| |||||||| | |||
Sbjct: 3023 ggggtgccggacctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctc 2964

                                                                        
Query: 414  atttcacccgcggaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgag 473
            ||||| ||| | ||||| ||||| |||||||||||| |||| |||||||| ||| | |||
Sbjct: 2963 atttcccccaccgaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgag 2904

                         
Query: 474  gcgattgccaagt 486
            ||||| |||||||
Sbjct: 2903 gcgatcgccaagt 2891



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 18   gccatgccgcccgcgcacacctccaaccccccttccttccgcccc 62
            |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 3374 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 3330
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>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07,
             complete sequence
          Length = 136858

 Score =  216 bits (109), Expect = 5e-53
 Identities = 217/253 (85%)
 Strand = Plus / Minus

                                                                         
Query: 234   ctgtttgccggtgggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacg 293
             ||||| ||||| |||||||| | ||||||||  ||||| |||||||||||||||||||||
Sbjct: 75909 ctgttcgccggcgggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacg 75850

                                                                         
Query: 294   gggcagacgggtgtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgcc 353
             |||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 75849 gggcaggcgggagttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgcc 75790

                                                                         
Query: 354   ggggttccagacctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactc 413
             ||||| || ||||||| ||| || |||||| |||| ||||| ||| |||||||| | |||
Sbjct: 75789 ggggtgccggacctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctc 75730

                                                                         
Query: 414   atttcacccgcggaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgag 473
             ||||| ||| | ||||| ||||| |||||||||||| |||| |||||||| ||| | |||
Sbjct: 75729 atttcccccaccgaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgag 75670

                          
Query: 474   gcgattgccaagt 486
             ||||| |||||||
Sbjct: 75669 gcgatcgccaagt 75657



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 18    gccatgccgcccgcgcacacctccaaccccccttccttccgcccc 62
             |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 76140 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 76096
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  216 bits (109), Expect = 5e-53
 Identities = 217/253 (85%)
 Strand = Plus / Minus

                                                                            
Query: 234      ctgtttgccggtgggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacg 293
                ||||| ||||| |||||||| | ||||||||  ||||| |||||||||||||||||||||
Sbjct: 12705622 ctgttcgccggcgggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacg 12705563

                                                                            
Query: 294      gggcagacgggtgtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgcc 353
                |||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 12705562 gggcaggcgggagttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgcc 12705503

                                                                            
Query: 354      ggggttccagacctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactc 413
                ||||| || ||||||| ||| || |||||| |||| ||||| ||| |||||||| | |||
Sbjct: 12705502 ggggtgccggacctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctc 12705443

                                                                            
Query: 414      atttcacccgcggaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgag 473
                ||||| ||| | ||||| ||||| |||||||||||| |||| |||||||| ||| | |||
Sbjct: 12705442 atttcccccaccgaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgag 12705383

                             
Query: 474      gcgattgccaagt 486
                ||||| |||||||
Sbjct: 12705382 gcgatcgccaagt 12705370



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                             
Query: 18       gccatgccgcccgcgcacacctccaaccccccttccttccgcccc 62
                |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 12705853 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 12705809
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>dbj|AK108453.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C11, full
           insert sequence
          Length = 1318

 Score =  216 bits (109), Expect = 5e-53
 Identities = 217/253 (85%)
 Strand = Plus / Plus

                                                                       
Query: 234 ctgtttgccggtgggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacg 293
           ||||| ||||| |||||||| | ||||||||  ||||| |||||||||||||||||||||
Sbjct: 342 ctgttcgccggcgggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacg 401

                                                                       
Query: 294 gggcagacgggtgtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgcc 353
           |||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 402 gggcaggcgggagttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgcc 461

                                                                       
Query: 354 ggggttccagacctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactc 413
           ||||| || ||||||| ||| || |||||| |||| ||||| ||| |||||||| | |||
Sbjct: 462 ggggtgccggacctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctc 521

                                                                       
Query: 414 atttcacccgcggaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgag 473
           ||||| ||| | ||||| ||||| |||||||||||| |||| |||||||| ||| | |||
Sbjct: 522 atttcccccaccgaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgag 581

                        
Query: 474 gcgattgccaagt 486
           ||||| |||||||
Sbjct: 582 gcgatcgccaagt 594



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 18  gccatgccgcccgcgcacacctccaaccccccttccttccgcccc 62
           |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 111 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 155
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>dbj|AK099865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111D24, full
           insert sequence
          Length = 1619

 Score =  216 bits (109), Expect = 5e-53
 Identities = 217/253 (85%)
 Strand = Plus / Plus

                                                                       
Query: 234 ctgtttgccggtgggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacg 293
           ||||| ||||| |||||||| | ||||||||  ||||| |||||||||||||||||||||
Sbjct: 246 ctgttcgccggcgggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacg 305

                                                                       
Query: 294 gggcagacgggtgtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgcc 353
           |||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 306 gggcaggcgggagttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgcc 365

                                                                       
Query: 354 ggggttccagacctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactc 413
           ||||| || ||||||| ||| || |||||| |||| ||||| ||| |||||||| | |||
Sbjct: 366 ggggtgccggacctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctc 425

                                                                       
Query: 414 atttcacccgcggaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgag 473
           ||||| ||| | ||||| ||||| |||||||||||| |||| |||||||| ||| | |||
Sbjct: 426 atttcccccaccgaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgag 485

                        
Query: 474 gcgattgccaagt 486
           ||||| |||||||
Sbjct: 486 gcgatcgccaagt 498



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                       
Query: 18 gccatgccgcccgcgcacacctccaaccccccttccttccgcccc 62
          |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 15 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 59
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>dbj|AK073234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024F08, full
           insert sequence
          Length = 1715

 Score =  216 bits (109), Expect = 5e-53
 Identities = 217/253 (85%)
 Strand = Plus / Plus

                                                                       
Query: 234 ctgtttgccggtgggaggggaaagaaggaccaacagacggtgttcgtcgcgggcgccacg 293
           ||||| ||||| |||||||| | ||||||||  ||||| |||||||||||||||||||||
Sbjct: 258 ctgttcgccggcgggagggggaggaaggacccgcagacagtgttcgtcgcgggcgccacg 317

                                                                       
Query: 294 gggcagacgggtgtccgcattgcacagacgctgctgcggcaaggtttcgccgtgcgcgcc 353
           |||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct: 318 gggcaggcgggagttcgcatcgcgcagacgctgctgcggcaggggttcgccgtgcgcgcc 377

                                                                       
Query: 354 ggggttccagacctcgagtcggcgcaggagttggcccggcttgccgccgcgtacagactc 413
           ||||| || ||||||| ||| || |||||| |||| ||||| ||| |||||||| | |||
Sbjct: 378 ggggtgccggacctcgcgtccgcccaggagctggcgcggctcgcctccgcgtaccggctc 437

                                                                       
Query: 414 atttcacccgcggaggcacgccggctcaacgcggtgaagtcggatttcgatgacactgag 473
           ||||| ||| | ||||| ||||| |||||||||||| |||| |||||||| ||| | |||
Sbjct: 438 atttcccccaccgaggcgcgccgactcaacgcggtggagtccgatttcgaggaccccgag 497

                        
Query: 474 gcgattgccaagt 486
           ||||| |||||||
Sbjct: 498 gcgatcgccaagt 510



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                       
Query: 18 gccatgccgcccgcgcacacctccaaccccccttccttccgcccc 62
          |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 27 gccatgcctcccgccctcacctccaaccccccctccttccgcccc 71
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                              
Query: 82       gccgcgccccatcctttctctgccgcgtcg 111
                |||||||||| |||||||||||||||||||
Sbjct: 42496885 gccgcgcccc-tcctttctctgccgcgtcg 42496913
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458E05
          Length = 193577

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                           
Query: 82    gccgcgccccatcctttctctgccgcgtcg 111
             |||||||||| |||||||||||||||||||
Sbjct: 17768 gccgcgcccc-tcctttctctgccgcgtcg 17796
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0483G10
          Length = 190721

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                            
Query: 82     gccgcgccccatcctttctctgccgcgtcg 111
              |||||||||| |||||||||||||||||||
Sbjct: 156223 gccgcgcccc-tcctttctctgccgcgtcg 156251
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 103     gccgcgtcggcgccggcaagcc 124
               ||||||||||||||||||||||
Sbjct: 6406141 gccgcgtcggcgccggcaagcc 6406162
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>gb|AC164648.3| Mus musculus BAC clone RP23-434H4 from chromosome 18, complete sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   tgaggaggccaagaagaatc 153
             ||||||||||||||||||||
Sbjct: 30873 tgaggaggccaagaagaatc 30892
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    ccacggggcagacgggtgtc 308
              ||||||||||||||||||||
Sbjct: 232707 ccacggggcagacgggtgtc 232726
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     caagaagaatcccttctttg 162
               ||||||||||||||||||||
Sbjct: 2508257 caagaagaatcccttctttg 2508276
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>ref|NM_181682.1| Mus musculus desmoglein 1 beta (Dsg1b), mRNA
          Length = 3404

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  tgaggaggccaagaagaatc 153
            ||||||||||||||||||||
Sbjct: 2502 tgaggaggccaagaagaatc 2483
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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   tgaggaggccaagaagaatc 153
             ||||||||||||||||||||
Sbjct: 37307 tgaggaggccaagaagaatc 37288
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 279    gtcgcgggcgccacggggcagacg 302
              |||||||||||||||| |||||||
Sbjct: 240949 gtcgcgggcgccacggcgcagacg 240972
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     cgcgtcggcgccggcaagcc 124
               ||||||||||||||||||||
Sbjct: 2034111 cgcgtcggcgccggcaagcc 2034092
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>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   ccttcccctcgccgggaacaggct 231
             |||||||||||||||| |||||||
Sbjct: 59721 ccttcccctcgccggggacaggct 59744
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>gb|AC125205.4| Mus musculus BAC clone RP23-238I2 from 14, complete sequence
          Length = 205957

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   gggaggggaaagaaggaccaacag 269
             ||||||||||||| ||||||||||
Sbjct: 51113 gggaggggaaagagggaccaacag 51136
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>emb|Z98752.16|HS138B7 Human DNA sequence from clone RP1-138B7 on chromosome 20q13.12 Contains
             the 3' end of the L3MBTL gene for l(3)mbt-like
             (Drosophila), the SGK2 gene for serum/glucocorticoid
             regulated kinase 2, the 5' end of the C20orf9 gene (NGD5,
             CGI-53), an HSPC194 pseudogene and a CpG island, complete
             sequence
          Length = 84323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   ggtgggaggggaaagaagga 262
             ||||||||||||||||||||
Sbjct: 33972 ggtgggaggggaaagaagga 33991
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>gb|AY315940.1| Mus musculus desmoglein 1beta (Dsg1b) mRNA, complete cds
          Length = 3183

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  tgaggaggccaagaagaatc 153
            ||||||||||||||||||||
Sbjct: 2402 tgaggaggccaagaagaatc 2383
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>gb|AC157798.5| Mus musculus chromosome 1, clone RP24-153N24, complete sequence
          Length = 163087

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ggggccgatgaggaggccaa 145
             ||||||||||||||||||||
Sbjct: 62572 ggggccgatgaggaggccaa 62553
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>gb|AY192158.1| Mus musculus desmoglein 5 (Dsg5) mRNA, complete cds
          Length = 3404

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  tgaggaggccaagaagaatc 153
            ||||||||||||||||||||
Sbjct: 2502 tgaggaggccaagaagaatc 2483
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     ttgccgccgcgtacagactc 413
               ||||||||||||||||||||
Sbjct: 3733986 ttgccgccgcgtacagactc 3733967
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    cgcgtcggcgccggcaagcc 124
              ||||||||||||||||||||
Sbjct: 195717 cgcgtcggcgccggcaagcc 195698
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     cgccggggttccagacctcg 369
               ||||||||||||||||||||
Sbjct: 1987601 cgccggggttccagacctcg 1987620
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>dbj|AK081473.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130019N03 product:histocompatibility 2, M
            region locus 2, full insert sequence
          Length = 1835

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  ggggccgatgaggaggccaa 145
            ||||||||||||||||||||
Sbjct: 1471 ggggccgatgaggaggccaa 1490
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>dbj|AK016043.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930545C20 product:hypothetical Cadherin
           cytoplasmic region containing protein, full insert
           sequence
          Length = 1091

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 134 tgaggaggccaagaagaatc 153
           ||||||||||||||||||||
Sbjct: 713 tgaggaggccaagaagaatc 694
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 105     cgcgtcggcgccggcaagcc 124
               ||||||||||||||||||||
Sbjct: 2129262 cgcgtcggcgccggcaagcc 2129281
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>dbj|AK036986.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930033D10 product:DESMOGLEIN 1
            (DESMOSOMAL GLYCOPROTEIN I) (DG1) (DGI) (FRAGMENT)
            homolog [Mus musculus], full insert sequence
          Length = 3966

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  tgaggaggccaagaagaatc 153
            ||||||||||||||||||||
Sbjct: 2610 tgaggaggccaagaagaatc 2591
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     ctgccgcgtcggcgccggca 120
               ||||||||||||||||||||
Sbjct: 4181332 ctgccgcgtcggcgccggca 4181313
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>gb|AC091633.22| Homo sapiens 3 BAC RP11-506F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153896

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    cccccttccttccgcccctt 64
             ||||||||||||||||||||
Sbjct: 29770 cccccttccttccgcccctt 29751
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>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    ggtgggaggggaaagaagga 262
              ||||||||||||||||||||
Sbjct: 163199 ggtgggaggggaaagaagga 163180
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>gb|AF157641.2|AF157641 Desulfitobacterium dehalogenans Hrd6-1 (hrd6-1) gene, partial cds;
            and putative Ni/Fe hydrogenase small subunit precursor
            (hydA), putative Ni/Fe hydrogenase large subunit
            precursor (hydB), putative Ni/Fe hydrogenase B-type
            cytochrome subunit (hydC), and putative Ni/Fe hydrogenase
            processing protein (hydD) genes, complete cds
          Length = 4883

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   gcccgccatgccgcccgcgc 33
            ||||||||||||||||||||
Sbjct: 3196 gcccgccatgccgcccgcgc 3215
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>emb|AJ538734.1|NTA538734 Nicotiana tabacum cDNA-AFLP-fragment BC4-M43-005
          Length = 442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 303 ggtgtccgcattgcacagac 322
           ||||||||||||||||||||
Sbjct: 29  ggtgtccgcattgcacagac 48
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>dbj|AK067635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110A16, full
           insert sequence
          Length = 3609

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 ctgccgcgtcggcgccggca 120
           ||||||||||||||||||||
Sbjct: 311 ctgccgcgtcggcgccggca 330
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     gccgcgtcggcgccggcaag 122
               ||||||||||||||||||||
Sbjct: 1503825 gccgcgtcggcgccggcaag 1503844
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     ctgccgcgtcggcgccggca 120
               ||||||||||||||||||||
Sbjct: 4181319 ctgccgcgtcggcgccggca 4181300
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>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of
              library OSJNBb from chromosome 12 of cultivar Nipponbare of
              ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 104999

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    ctgccgcgtcggcgccggca 120
              ||||||||||||||||||||
Sbjct: 102451 ctgccgcgtcggcgccggca 102470


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,071,303
Number of Sequences: 3902068
Number of extensions: 3071303
Number of successful extensions: 62172
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 61209
Number of HSP's gapped (non-prelim): 966
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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