ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet12f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosom... 38 5.9
2gb|AC151343.2| Xenopus tropicalis clone ISB-373E17, complete seq... 38 5.9
3dbj|AP000782.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 5.9
4dbj|AP001575.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 5.9

>gb|AC165085.3| Mus musculus BAC clone RP23-222G22 from chromosome 6, complete sequence
          Length = 201337

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 32     aacgagtaagaaagagatacagg 54
              |||||| ||||||||||||||||
Sbjct: 115776 aacgagaaagaaagagatacagg 115798



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>gb|AC151343.2| Xenopus tropicalis clone ISB-373E17, complete sequence
          Length = 88775

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    aagagatacaggagggagg 61
             |||||||||||||||||||
Sbjct: 68797 aagagatacaggagggagg 68779



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>dbj|AP000782.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1199D2
          Length = 154037

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     taagaaagagatacaggag 56
              |||||||||||||||||||
Sbjct: 118993 taagaaagagatacaggag 119011



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>dbj|AP001575.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB2005E8
          Length = 56662

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   taagaaagagatacaggag 56
            |||||||||||||||||||
Sbjct: 7310 taagaaagagatacaggag 7328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 833,340
Number of Sequences: 3902068
Number of extensions: 833340
Number of successful extensions: 46392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46386
Number of HSP's gapped (non-prelim): 6
length of query: 127
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 106
effective length of database: 17,151,101,840
effective search space: 1818016795040
effective search space used: 1818016795040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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