ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet12e05 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 74.3 bits (181), Expect = 7e-14 Identities = 39/39 (100%), Positives = 39/39 (100%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ 246 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ 47
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 72.8 bits (177), Expect = 2e-13 Identities = 38/39 (97%), Positives = 38/39 (97%) Frame = +1 Query: 130 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ 246 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQ 47
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.40 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -1 Query: 188 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 39 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -1 Query: 296 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 159 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -1 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1 Query: 317 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1 Query: 317 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 228 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 4.4 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -1 Query: 275 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 96 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 95 ELGLSLASTALQEFNELELECTVLLY 18 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -1 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -1 Query: 290 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144
>ALGE_PSEAE (P18895) Alginate production protein algE precursor| Length = 490 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -1 Query: 116 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGL 3 WR DD ++G S + ALQ + EL+ V YF GL Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL 442
>ANPB_PSEAM (Q99013) Ice-structuring protein B precursor (ISP B) (Antifreeze| protein B) (HPLC8) Length = 82 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT NAA + ATA Sbjct: 46 TASDAAAAAALTAANAAAAAKLTADNAAAAAAATA 80
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 27.7 bits (60), Expect = 7.5 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -1 Query: 203 TPRNAAVSFTATAPMLLPFLGT-ERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27 TP+ TAT P+ LP G E+ +G+ + +D LG L + L L L C V Sbjct: 605 TPKPGTSQSTATGPISLPSTGAGEQGDGQRFSTVDMAVLGGVLGALLL-----LALICLV 659 Query: 26 LL 21 +L Sbjct: 660 IL 661
>HAS1_CANAL (Q5AK59) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 565 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -1 Query: 281 GLVVTGEGAVATCVLTASDAFFALLLTPRN--AAVSFTATAPMLLPFLGTER 132 G TG G ++ A + ++L + PRN A + T T + L G R Sbjct: 150 GAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVAR 201
>ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) (Antifreeze| protein A) (HPLC6) Length = 82 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 269 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 165 T A A LTA++A A LT NAA + ATA Sbjct: 46 TASDAAAAAALTAANAKAAAELTAANAAAAAAATA 80
>CASK_UNCUN (Q29150) Kappa-casein (Fragment)| Length = 146 Score = 27.3 bits (59), Expect = 9.9 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -1 Query: 287 EPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 168 EP L T E V T V T + + F + TP V T+T Sbjct: 105 EPTLTPTTEPIVNTVVTTEASSEFTITSTPETTTVPVTST 144
>RBL_ARCFU (O28635) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 441 Score = 27.3 bits (59), Expect = 9.9 Identities = 26/74 (35%), Positives = 32/74 (43%) Frame = -1 Query: 308 PLGDDAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERV 129 P DD V + EG T DA A+ AA S T T L P+ ERV Sbjct: 17 PQKDDIVAVFRITPAEG------FTIEDAAGAV------AAESSTGTWTSLHPWYDEERV 64 Query: 128 EGRSWRAMDDGELG 87 +G S +A D +LG Sbjct: 65 KGLSAKAYDFVDLG 78
>TRAM7_ECOLI (P33787) Protein traM| Length = 127 Score = 27.3 bits (59), Expect = 9.9 Identities = 24/57 (42%), Positives = 29/57 (50%) Frame = -1 Query: 197 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27 R VSF+ATA MLL LG E + M+ E + A EFN+L LEC V Sbjct: 29 REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75
>TRAM6_ECOLI (P18808) Protein traM| Length = 127 Score = 27.3 bits (59), Expect = 9.9 Identities = 24/57 (42%), Positives = 29/57 (50%) Frame = -1 Query: 197 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 27 R VSF+ATA MLL LG E + M+ E + A EFN+L LEC V Sbjct: 29 REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.306 0.119 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,589,733 Number of Sequences: 219361 Number of extensions: 302982 Number of successful extensions: 863 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 862 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
