ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet12d02 |
|---|---|
| Clone Library Name | barley_pub |
>LRC34_HUMAN (Q8IZ02) Leucine-rich repeat-containing protein 34| Length = 419 Score = 31.6 bits (70), Expect = 0.50 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +3 Query: 45 SNLVQSGGNMGDQSTLITGY-FAHAFLW--KTSELTCVLRHFIVVCNELLYGNTDVERFV 215 SN ++ G + ++ T F+H ++W K E TC+ ++ L NTDVE FV Sbjct: 315 SNNIEGEGLVALSQSMKTNLTFSHIYIWGNKFDEATCITYSDLIQMGCLKPDNTDVEPFV 374 Query: 216 LEVSLTLDWILN 251 ++ + L + N Sbjct: 375 VDGRVYLAEVSN 386
>CYB6_SKECO (O96801) Cytochrome b6| Length = 215 Score = 30.8 bits (68), Expect = 0.86 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 51 LVQSGGNMGDQSTLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYG 191 LV GG QSTL Y AH F+ + +L HF+++ + + G Sbjct: 167 LVLRGGESVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISG 213
>CYB6_ODOSI (P49488) Cytochrome b6| Length = 215 Score = 30.8 bits (68), Expect = 0.86 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +3 Query: 51 LVQSGGNMGDQSTLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYG 191 LV GG QSTL Y AH F+ + +L HF+++ + + G Sbjct: 167 LVLRGGESVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISG 213
>RAVA_SALTY (Q8ZKW2) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 230 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 141 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>RAVA_SALTI (Q8Z2R1) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 230 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 141 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>RAVA_SALPA (Q5PJX8) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 230 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 141 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>RAVA_SALCH (Q57HW4) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 230 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 141 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>GUN1_RUMAL (P16216) Endoglucanase 1 precursor (EC 3.2.1.4) (Endoglucanase I)| (Endo-1,4-beta-glucanase) (Cellulase) (EG-I) Length = 406 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 15 VIQRSSKDYSSNLVQSGGNMGDQSTLITGYFA 110 +I K + + SGGN GD+ +ITGY A Sbjct: 229 IINEYEKAFVETVRASGGNNGDRCLMITGYAA 260
>GUNB_RUMAL (P23661) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGB) Length = 409 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 15 VIQRSSKDYSSNLVQSGGNMGDQSTLITGYFA 110 +I K + + SGGN GD+ +ITGY A Sbjct: 231 IINEYEKAFVETVRASGGNNGDRCLMITGYAA 262
>CYB6_PROMP (Q7V2X6) Cytochrome b6| Length = 218 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +3 Query: 36 DYSSNLVQSGGNMGDQSTLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYG 191 D+ L++ G ++G QSTL Y H F+ S +L HF+++ + + G Sbjct: 166 DFMVELLRGGESVG-QSTLTRFYSLHTFVLPWSLAVFMLMHFLMIRKQGISG 216
>TEKT1_MOUSE (Q9DAJ2) Tektin-1| Length = 418 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -1 Query: 241 QSSVRLTSRTNLSTSVFPYRSSLHTTMKC---RSTQVSSDVFH 122 Q+ LT +T L S+ Y+ LH T KC R +V D+ H Sbjct: 87 QTDDLLTYKTRLERSLESYKEPLHITEKCLEYREKRVGIDLVH 129
>YR789_MIMIV (Q5UQ06) Putative ankyrin repeat protein R789| Length = 422 Score = 28.5 bits (62), Expect = 4.3 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 24/111 (21%) Frame = +3 Query: 6 VEGVIQRSSKDYSSNLVQS-------GGNMGDQSTLITGYFAHAF--------------- 119 V+ ++ S+K+Y SN++ + GG+M L+ +H F Sbjct: 166 VKNLLYTSTKNYFSNVIDASLVYAARGGSMDILMYLLELGASHNFAIICASIHGQLDVVK 225 Query: 120 --LWKTSELTCVLRHFIVVCNELLYGNTDVERFVLEVSLTLDWILNHCFSL 266 L K E T + + I++ + YG +V ++++E LD L++C + Sbjct: 226 YLLQKGQEYTTKIEYCIIMAAQ--YGQVNVVKYLIESGNELDHNLDYCLKV 274
>RB3GP_BRARE (Q6NUV0) Rab3 GTPase-activating protein catalytic subunit| Length = 969 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -1 Query: 355 ICLAATASCPSLLSKSKCFMIVSLIS----DTSCSEKQWFSIQSSVR 227 + ++ A+C +++S+SKC +++S +S +T C + IQ R Sbjct: 128 VVISPGANCEAIISESKCSLLLSSVSIALANTGCQVPLFVQIQQKHR 174
>SECA_CAUCR (P38380) Preprotein translocase secA subunit| Length = 923 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 126 KTSELTCVLRHFIVVCNELLYGNTDVERFVLEVSLTLDWILNHCFSLQDVSEMRETIIKH 305 + +++ + + +E L G T + LE TLD ILN F++ + R ++H Sbjct: 23 RVAKINAYEAEYAALSDEALKGKTAEFKARLEKGETLDDILNEAFAVVREASKRVLGMRH 82 Query: 306 LDLDSSDG 329 D+ G Sbjct: 83 FDVQMVGG 90
>CN102_HUMAN (Q9H7Z3) Protein C14orf102| Length = 1164 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -1 Query: 346 AATASCPSLLSKSKCFMIVSLISDTSCSEKQWFSIQSSVRLTSR--TNLSTSVFP 188 A T SC L+S +KCFM+ ++ I ++V++ + L++SVFP Sbjct: 895 APTDSCSRLISLAKCFMLFQYLT---------IGIDAAVQIYEQVFAKLNSSVFP 940
>LRC34_RAT (Q4V8D9) Leucine-rich repeat-containing protein 34| Length = 415 Score = 27.7 bits (60), Expect = 7.3 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +3 Query: 45 SNLVQSGGNMGDQSTLITGY-FAHAFLW--KTSELTCVLRHFIVVCNELLYGNTDVERFV 215 SN ++ G + ++ T ++ ++W K E TCV ++ L NTDVE +V Sbjct: 311 SNKIEGEGLVALSQSMNTNLVLSNIYIWGNKFDEDTCVAYSNLIESGRLKPENTDVEPYV 370 Query: 216 LEVSLTLDWILN 251 ++ + L + N Sbjct: 371 VDEHIYLSEVSN 382
>EST1_HUMAN (P23141) Liver carboxylesterase 1 precursor (EC 3.1.1.1) (Acyl| coenzyme A:cholesterol acyltransferase) (ACAT) (Monocyte/macrophage serine esterase) (HMSE) (Serine esterase 1) (Brain carboxylesterase hBr1) (Triacylglycerol hydrolase) (TGH) (Ega Length = 567 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 108 AHAFLWKTSELTCVLRHFIVVCNELLYGNTDVERFVLEVSLTLDWILNHCFSLQDV 275 A + LWK+ L C+ + I E G TD V + L LD I + F + V Sbjct: 378 AMSLLWKSYPLVCIAKELIPEATEKYLGGTD--DTVKKKDLFLDLIADVMFGVPSV 431
>PQN25_CAEEL (P41951) Glutamine/asparagine-rich protein pqn-25| Length = 672 Score = 27.3 bits (59), Expect = 9.5 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Frame = -1 Query: 352 CLAATASCPSLLSKSKCFMIVSLISDTSCSEKQWFSIQSS---VRLTSRTNLSTSVFPYR 182 C+ + CPS + F S S CS Q + SS + T + S Y Sbjct: 596 CMNSFCQCPSGTTNVNNFCTTSSSSSNLCSAGQTVQLDSSNQPINCLVSTCPNNSFCQYS 655 Query: 181 SSLHTTMKCRST 146 SS + CRST Sbjct: 656 SSGQRYVCCRST 667
>YJF1_YEAST (P47046) Hypothetical 91.3 kDa protein in TDH1-MTR4 intergenic| region Length = 822 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 87 TLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYGNTDVERFVLE 221 ++ TG A A L K + VL ++VC+ LLYG + F+ E Sbjct: 25 SIATGAIAIALLCKFHDHEAVL--IVIVCSTLLYGIPSLISFITE 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,412,632 Number of Sequences: 219361 Number of extensions: 915500 Number of successful extensions: 2358 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2355 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
