ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet12d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024071.1| Zea mays clone EL01N0501E06 mRNA sequence 121 2e-24
2ref|XM_474123.1| Oryza sativa (japonica cultivar-group), predic... 109 6e-21
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 109 6e-21
4dbj|AK103112.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 6e-21
5emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 109 6e-21
6emb|AL732335.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 109 6e-21
7emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 109 6e-21
8emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4,... 109 6e-21
9emb|AL500525.4| Human DNA sequence from clone RP5-944N15 on chro... 40 4.7
10emb|AL136365.9| Human DNA sequence from clone RP11-143M15 on chr... 40 4.7
11gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21,... 40 4.7
12gb|AC010997.12| Homo sapiens chromosome 10 clone RP11-399K21, co... 40 4.7
13gb|AC096748.1| Homo sapiens BAC clone RP11-400D2 from 4, complet... 40 4.7
14gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 4.7 
>gb|BT024071.1| Zea mays clone EL01N0501E06 mRNA sequence
          Length = 2118

 Score =  121 bits (61), Expect = 2e-24
 Identities = 181/221 (81%)
 Strand = Plus / Plus

                                                                       
Query: 108 gctcatgcattcttatggaaaacatcggaacttacttgtgtactgcgacacttcattgtc 167
           |||| ||||||||| ||||| ||||| |||||||||| |||||||| | | ||  || | 
Sbjct: 560 gctcgtgcattcttgtggaatacatcagaacttacttctgtactgcaaaattttgttttt 619

                                                                       
Query: 168 gtatgcaatgagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagc 227
           |  ||||| ||||||||||||||||  |||||||||||||| ||||||| |||  |    
Sbjct: 620 gcgtgcaacgagcttctgtatgggagtactgatgtcgaaagctttgttcatgacctacaa 679

                                                                       
Query: 228 ctcacactagattggatactgaaccactgcttttcactacaagatgtatcagagatgagg 287
            ||||| ||||||||||| ||||||||||||| ||||| | |||||||||||| |||| |
Sbjct: 680 gtcacattagattggataatgaaccactgcttctcacttcgagatgtatcagacatgaag 739

                                                    
Query: 288 gaaactatcataaagcatttggatttagatagcagtgatgg 328
           ||| | ||||| ||||||||||| ||| | | |||||||||
Sbjct: 740 gaagccatcatgaagcatttggaattaaacaacagtgatgg 780
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>ref|XM_474123.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2751

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                        
Query: 177  gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
            |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 1663 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 1722

                                                                        
Query: 237  gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
            || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1723 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 1782

                                       
Query: 297  ataaagcatttggatttagatagcagt 323
            |||||| | |||||  || ||||||||
Sbjct: 1783 ataaagaacttggagataaatagcagt 1809
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                            
Query: 177      gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
                |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 33118417 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 33118476

                                                                            
Query: 237      gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
                || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 33118477 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 33118536

                                           
Query: 297      ataaagcatttggatttagatagcagt 323
                |||||| | |||||  || ||||||||
Sbjct: 33118537 ataaagaacttggagataaatagcagt 33118563
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>dbj|AK103112.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119E14, full
            insert sequence
          Length = 3116

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                        
Query: 177  gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
            |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 1768 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 1827

                                                                        
Query: 237  gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
            || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1828 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 1887

                                       
Query: 297  ataaagcatttggatttagatagcagt 323
            |||||| | |||||  || ||||||||
Sbjct: 1888 ataaagaacttggagataaatagcagt 1914
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>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
            sequence
          Length = 118971

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                        
Query: 177  gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
            |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 9248 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 9307

                                                                        
Query: 237  gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
            || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 9308 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 9367

                                       
Query: 297  ataaagcatttggatttagatagcagt 323
            |||||| | |||||  || ||||||||
Sbjct: 9368 ataaagaacttggagataaatagcagt 9394
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>emb|AL732335.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0721B11, complete
             sequence
          Length = 43586

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                         
Query: 177   gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
             |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 43074 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 43133

                                                                         
Query: 237   gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
             || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 43134 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 43193

                                        
Query: 297   ataaagcatttggatttagatagcagt 323
             |||||| | |||||  || ||||||||
Sbjct: 43194 ataaagaacttggagataaatagcagt 43220
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
            complete sequence
          Length = 165745

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                        
Query: 177  gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
            |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 1067 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 1126

                                                                        
Query: 237  gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
            || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1127 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 1186

                                       
Query: 297  ataaagcatttggatttagatagcagt 323
            |||||| | |||||  || ||||||||
Sbjct: 1187 ataaagaacttggagataaatagcagt 1213
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>emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21,
              complete sequence
          Length = 140626

 Score =  109 bits (55), Expect = 6e-21
 Identities = 124/147 (84%)
 Strand = Plus / Plus

                                                                          
Query: 177    gagcttctgtatgggaacactgatgtcgaaagatttgttcttgaagtgagcctcacacta 236
              |||||| |||||||||  || ||||| ||||||||||| |||||| | |   ||||||||
Sbjct: 127998 gagcttttgtatgggagtacagatgttgaaagatttgtgcttgaaatcaatatcacacta 128057

                                                                          
Query: 237    gattggatactgaaccactgcttttcactacaagatgtatcagagatgagggaaactatc 296
              || |||||| | | ||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 128058 gactggataatcagccactgcttttcactccaagatgtatcagacatgagggagactatc 128117

                                         
Query: 297    ataaagcatttggatttagatagcagt 323
              |||||| | |||||  || ||||||||
Sbjct: 128118 ataaagaacttggagataaatagcagt 128144
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>emb|AL500525.4| Human DNA sequence from clone RP5-944N15 on chromosome 1 Contains the
            3' end of the gene for mesoderm induction early response
            1 (MI-ER1) and the 3' end of the SLC35D1 gene for solute
            carrier family 35
            (UDP-glucuronicacid/UDP-N-acetylgalactosamine dual
            transporter), member D1, complete sequence
          Length = 37306

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  tgcattcttatggaaaacat 132
            ||||||||||||||||||||
Sbjct: 2451 tgcattcttatggaaaacat 2470
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>emb|AL136365.9| Human DNA sequence from clone RP11-143M15 on chromosome 9p23-24.3
              Contains the DMRT1 gene for doublesex and mab-3 related
              transcription factor 1, the DMRT3 gene for doublesex and
              mab-3 related transcription factor 3 and four CpG islands,
              complete sequence
          Length = 179006

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 305    tttggatttagatagcagtgatgg 328
              |||||| |||||||||||||||||
Sbjct: 108828 tttggaattagatagcagtgatgg 108805
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>gb|AC005189.2| Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21, complete sequence
          Length = 176413

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    aaagatttgttcttgaagtg 224
              ||||||||||||||||||||
Sbjct: 155409 aaagatttgttcttgaagtg 155428
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>gb|AC010997.12| Homo sapiens chromosome 10 clone RP11-399K21, complete sequence
          Length = 189639

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   ctatcataaagcatttggat 311
             ||||||||||||||||||||
Sbjct: 17081 ctatcataaagcatttggat 17100
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>gb|AC096748.1| Homo sapiens BAC clone RP11-400D2 from 4, complete sequence
          Length = 176749

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    ctgaaccactgcttttcact 265
              ||||||||||||||||||||
Sbjct: 161083 ctgaaccactgcttttcact 161102
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 19      ttcagagatcgtcaaaggattaca 42
               |||||||||||| |||||||||||
Sbjct: 2732473 ttcagagatcgttaaaggattaca 2732450


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,719,768
Number of Sequences: 3902068
Number of extensions: 2719768
Number of successful extensions: 48223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48171
Number of HSP's gapped (non-prelim): 45
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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