ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet125e05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2, fertilization-independent endosperm proteins, hypothetical protein, putative non-LTR retroelement reverse transcriptase, OCL5 protein, tryptophan synthase beta-subunit, hypothetical proteins, putative AP endonuclease, putative RNA polymerase II complex component SRB7, putative beta-1,3-glucanase, hypothetical protein, TNP2-like protein, hypothetical protein, putative phosphate/phosphoenolpyruvate translocator, putative protein, hypothetical proteins, putative galactosyltransferase family, hypothetical protein, putative cytochrome P450 family, putative lipid transfer protein, putative photoreceptor-interacting protein, and hypothetical protein genes, complete cds; and hypothetical protein gene, partial cds Length = 202197 Score = 214 bits (108), Expect = 7e-53 Identities = 168/188 (89%) Strand = Plus / Minus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgactcgacgacgcacgactac 60 ||||||||||||||||||||||| |||||||||||||||||| | || ||||||||| || Sbjct: 114380 ttcgacgaggacaacctcatcccgtgcttcggcttcggcgacgccaccacgcacgacaac 114321 Query: 61 aacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtgctggcc 120 ||||||||||||||||||| ||||||| | || ||||| |||||||||||||| |||||| Sbjct: 114320 aacgtcttcagcttccaccgggacaacaccccctgccatggcttcgaggaggtcctggcc 114261 Query: 121 tgctaccggaacgtcgtgccgcacctcaggctatcatggccgacgtcctttgcgccgatc 180 |||||||| | ||||||||||||||||||||| || | |||||||| || ||||| ||| Sbjct: 114260 tgctaccgcaccgtcgtgccgcacctcaggctttccggcccgacgtcgttcgcgcccatc 114201 Query: 181 gtggaggc 188 |||||||| Sbjct: 114200 gtggaggc 114193
>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1, xilon1 retrotransposon, helitron B73_14578, gypsy retrotransposon huck1 and ruda retrotransposon, complete sequence Length = 152384 Score = 139 bits (70), Expect = 3e-30 Identities = 88/94 (93%) Strand = Plus / Plus Query: 55 gactacaacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtg 114 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28396 gactacaacgtgttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtc 28455 Query: 115 ctggcctgctaccggaacgtcgtgccgcacctca 148 || ||||||||||| || ||||||||||||||| Sbjct: 28456 ctcgcctgctaccgcaagatcgtgccgcacctca 28489 Score = 75.8 bits (38), Expect = 4e-11 Identities = 38/38 (100%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcgg 38 |||||||||||||||||||||||||||||||||||||| Sbjct: 28189 ttcgacgaggacaacctcatcccctgcttcggcttcgg 28226 Score = 38.2 bits (19), Expect = 9.3 Identities = 28/31 (90%) Strand = Plus / Plus Query: 158 ggccgacgtcctttgcgccgatcgtggaggc 188 |||||||||| || ||||| ||||||||||| Sbjct: 28605 ggccgacgtcgttcgcgcccatcgtggaggc 28635
>ref|XM_507124.1| PREDICTED Oryza sativa (japonica cultivar-group), P0680F05.38 mRNA Length = 1761 Score = 95.6 bits (48), Expect = 5e-17 Identities = 153/188 (81%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgactcgacgacgcacgactac 60 |||||||| || || |||||||| ||||| |||||||||||| | || || || |||||| Sbjct: 577 ttcgacgatgataatctcatcccatgctttggcttcggcgacgcaaccacacatgactac 636 Query: 61 aacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtgctggcc 120 || || ||||||||||| || |||||||| || ||||| || ||||||||||| || | Sbjct: 637 aatgtgttcagcttccatcctgacaactcaccctgccatggattcgaggaggtcctatca 696 Query: 121 tgctaccggaacgtcgtgccgcacctcaggctatcatggccgacgtcctttgcgccgatc 180 |||||| ||| | ||||| |||||||||||||| |||| || || || ||||||||| Sbjct: 697 tgctacaagaagattgtgccacacctcaggctatctgggcctacctctttcgcgccgatc 756 Query: 181 gtggaggc 188 || ||||| Sbjct: 757 gtcgaggc 764
>ref|XM_479968.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1648 Score = 95.6 bits (48), Expect = 5e-17 Identities = 153/188 (81%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgactcgacgacgcacgactac 60 |||||||| || || |||||||| ||||| |||||||||||| | || || || |||||| Sbjct: 588 ttcgacgatgataatctcatcccatgctttggcttcggcgacgcaaccacacatgactac 647 Query: 61 aacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtgctggcc 120 || || ||||||||||| || |||||||| || ||||| || ||||||||||| || | Sbjct: 648 aatgtgttcagcttccatcctgacaactcaccctgccatggattcgaggaggtcctatca 707 Query: 121 tgctaccggaacgtcgtgccgcacctcaggctatcatggccgacgtcctttgcgccgatc 180 |||||| ||| | ||||| |||||||||||||| |||| || || || ||||||||| Sbjct: 708 tgctacaagaagattgtgccacacctcaggctatctgggcctacctctttcgcgccgatc 767 Query: 181 gtggaggc 188 || ||||| Sbjct: 768 gtcgaggc 775
>dbj|AK072961.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000G10, full insert sequence Length = 1648 Score = 95.6 bits (48), Expect = 5e-17 Identities = 153/188 (81%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgactcgacgacgcacgactac 60 |||||||| || || |||||||| ||||| |||||||||||| | || || || |||||| Sbjct: 588 ttcgacgatgataatctcatcccatgctttggcttcggcgacgcaaccacacatgactac 647 Query: 61 aacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtgctggcc 120 || || ||||||||||| || |||||||| || ||||| || ||||||||||| || | Sbjct: 648 aatgtgttcagcttccatcctgacaactcaccctgccatggattcgaggaggtcctatca 707 Query: 121 tgctaccggaacgtcgtgccgcacctcaggctatcatggccgacgtcctttgcgccgatc 180 |||||| ||| | ||||| |||||||||||||| |||| || || || ||||||||| Sbjct: 708 tgctacaagaagattgtgccacacctcaggctatctgggcctacctctttcgcgccgatc 767 Query: 181 gtggaggc 188 || ||||| Sbjct: 768 gtcgaggc 775
>dbj|AK064276.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F03, full insert sequence Length = 1760 Score = 81.8 bits (41), Expect = 7e-13 Identities = 95/113 (84%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgactcgacgacgcacgactac 60 |||||||| || || |||||||| ||||| |||||||||||| | || || || |||||| Sbjct: 577 ttcgacgatgataatctcatcccatgctttggcttcggcgacgcaaccacacatgactac 636 Query: 61 aacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggt 113 || || ||||||||||| || |||||||| || ||||| || ||||||||||| Sbjct: 637 aatgtgttcagcttccatcctgacaactcaccctgccatggattcgaggaggt 689
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 1e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 55 gactacaacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtg 114 |||||||| || ||||||||||| || |||||||| || ||||| || ||||||||||| Sbjct: 2002664 gactacaatgtgttcagcttccatcctgacaactcaccctgccatggattcgaggaggtc 2002723 Query: 115 ctggcctgctaccggaacgtcgtgccgcacctcaggctatc 155 || | |||||| ||| | ||||| |||||||||||||| Sbjct: 2002724 ctatcatgctacaagaagattgtgccacacctcaggctatc 2002764 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgac 42 |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 2002454 ttcgacgatgataatctcatcccatgctttggcttcggcgac 2002495
>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0680F05 Length = 185495 Score = 58.0 bits (29), Expect = 1e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 55 gactacaacgtcttcagcttccacccggacaactcgccgtgccacggcttcgaggaggtg 114 |||||||| || ||||||||||| || |||||||| || ||||| || ||||||||||| Sbjct: 127862 gactacaatgtgttcagcttccatcctgacaactcaccctgccatggattcgaggaggtc 127921 Query: 115 ctggcctgctaccggaacgtcgtgccgcacctcaggctatc 155 || | |||||| ||| | ||||| |||||||||||||| Sbjct: 127922 ctatcatgctacaagaagattgtgccacacctcaggctatc 127962 Score = 44.1 bits (22), Expect = 0.15 Identities = 37/42 (88%) Strand = Plus / Plus Query: 1 ttcgacgaggacaacctcatcccctgcttcggcttcggcgac 42 |||||||| || || |||||||| ||||| |||||||||||| Sbjct: 127652 ttcgacgatgataatctcatcccatgctttggcttcggcgac 127693
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 tgcttcggcttcggcgactcga 46 |||||||||||||||||||||| Sbjct: 1890559 tgcttcggcttcggcgactcga 1890580
>ref|XM_468096.1| Oryza sativa (japonica cultivar-group), mRNA Length = 384 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 271 gccgacgtcctttgcgccga 252
>ref|XM_468095.1| Oryza sativa (japonica cultivar-group), mRNA Length = 590 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 15 gccgacgtcctttgcgccga 34
>gb|AF146601.3| Aeromonas hydrophila clone F121-126 putative rfbN protein, putative acyl-CoA reductase LuxC, putative glycosyltransferase, putative UDP-galactopyranose mutase, putative UDP-galactopyranose mutase, putative glycosly transferase, putative SAM-dependent methyltransferase, putative glycosyl transferase group 2, putative GDP-mannose 4,6-dehydratase, pPutative nucleotide di-P-sugar epimerase/dehydratase, putative chloramphenicol acetyltransferase, putative N-acetyl neuramic acid synthetase NeuB, putative acylneuraminate cytidylyltransferase, putative O-antigen methyl transferase, putative phosphomannomutase, putative polysaccharide biosynthesis protein, putative polysaccharide biosynthesis protein, and putative glycosidase genes, complete cds Length = 20147 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cgtcttcagcttccacccgg 82 |||||||||||||||||||| Sbjct: 16295 cgtcttcagcttccacccgg 16276
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 cttcgaggaggtgctggcct 121 |||||||||||||||||||| Sbjct: 2062660 cttcgaggaggtgctggcct 2062641
>ref|XM_615341.2| PREDICTED: Bos taurus similar to dystonin isoform a (LOC535297), mRNA Length = 23670 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ttcgaggaggtgctggcctg 122 |||||||||||||||||||| Sbjct: 21079 ttcgaggaggtgctggcctg 21098
>emb|AJ245666.1|RME245666 Rhizobium meliloti rkpL, rkpM, rkpN, rkpO, rkpP, rkpQ, rkpR, rkpS, rkpT and rkpZ genes and ORF140 Length = 12821 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtcttcagcttccacccgg 82 |||||||||||||||||||| Sbjct: 3060 cgtcttcagcttccacccgg 3079
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ttcgaggaggtgctggcctg 122 |||||||||||||||||||| Sbjct: 1100232 ttcgaggaggtgctggcctg 1100251
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 11802303 gccgacgtcctttgcgccga 11802322
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 33023012 gccgacgtcctttgcgccga 33022993
>gb|AF146600.1|AF146600 Aeromonas hydrophila putative polysaccharide biosynthesis protein gene, partial cds Length = 1507 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtcttcagcttccacccgg 82 |||||||||||||||||||| Sbjct: 554 cgtcttcagcttccacccgg 573
>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_A01 Length = 139121 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 68952 gccgacgtcctttgcgccga 68933
>dbj|AP005805.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0006M19 Length = 144073 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 70238 gccgacgtcctttgcgccga 70257
>dbj|AK069999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L07, full insert sequence Length = 610 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 gccgacgtcctttgcgccga 178 |||||||||||||||||||| Sbjct: 15 gccgacgtcctttgcgccga 34
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ttcggcttcggcgactcgac 47 |||||||||||||||||||| Sbjct: 1989317 ttcggcttcggcgactcgac 1989336
>ref|NM_194956.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0036D19.9), mRNA Length = 375 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 32 ctgcttcggcttcggcgac 50
>ref|NM_193201.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2592 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 564 ctgcttcggcttcggcgac 582
>gb|BC107445.1| Rattus norvegicus cDNA clone IMAGE:7365264 Length = 1800 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 gactacaacgtcttcagct 73 ||||||||||||||||||| Sbjct: 35 gactacaacgtcttcagct 53
>gb|U27591.1| Rhodococcus sp. M5 terminal dioxygenase, large subunit (bpdC1), terminal dioxygenase, small subunit (bpdC2), ferredoxin (bpdB), ferrodoxin reductase (bpdA), 2,3-dihydroxy-4-phenylhexa-4,6-diene dehydrogenase (bpdD), and 2,3-dihydroxybiphenyl 1,2-dioxygenase (bpdE) genes, complete cds Length = 6680 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gacgaggacaacctcatcc 22 ||||||||||||||||||| Sbjct: 4391 gacgaggacaacctcatcc 4373
>gb|AC116600.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0036D19, complete sequence Length = 126686 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 73609 ctgcttcggcttcggcgac 73591
>gb|DQ096563.1| Toxoplasma gondii rhoptry neck protein 2 (RON2) mRNA, complete cds Length = 4146 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 95 gccacggcttcgaggaggtgctg 117 ||||||||||||||||| ||||| Sbjct: 977 gccacggcttcgaggagctgctg 955
>emb|AL049825.18|HSJ662B22 Human DNA sequence from clone RP4-662B22 on chromosome 1p12-13.3 Contains the 3' end of the NGFB gene for nerve growth factor (beta polypeptide) and the 5' end of a novel gene, complete sequence Length = 116521 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 caacctcatcccctgcttc 30 ||||||||||||||||||| Sbjct: 99703 caacctcatcccctgcttc 99685
>emb|X75633.1|RGBPHBC1 R.globerulus bphB and bphC1 genes Length = 1804 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gacgaggacaacctcatcc 22 ||||||||||||||||||| Sbjct: 57 gacgaggacaacctcatcc 39
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 cccctgcttcggcttcggc 39 ||||||||||||||||||| Sbjct: 134253 cccctgcttcggcttcggc 134271
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 164 cgtcctttgcgccgatcgtggag 186 |||||| |||||||||||||||| Sbjct: 194653 cgtcctatgcgccgatcgtggag 194631
>gb|AY988319.1| Juniperus occidentalis NEEDLY gene, exons 2 and 3 and partial sequence Length = 764 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 cttcgaggaggtgctggcc 120 ||||||||||||||||||| Sbjct: 331 cttcgaggaggtgctggcc 349
>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08, complete sequence Length = 180499 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 6923 ctgcttcggcttcggcgac 6905
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 tcttcagcttccacccgga 83 ||||||||||||||||||| Sbjct: 2680371 tcttcagcttccacccgga 2680389
>emb|BX931274.2| Gallus gallus finished cDNA, clone ChEST679e10 Length = 649 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 cggcttcgaggaggtgctg 117 ||||||||||||||||||| Sbjct: 41 cggcttcgaggaggtgctg 59
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 3725127 ctgcttcggcttcggcgac 3725109
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 19244010 ctgcttcggcttcggcgac 19243992
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1619_F12 Length = 133028 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 63631 ctgcttcggcttcggcgac 63613
>dbj|AK100419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088A20, full insert sequence Length = 2394 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 302 ctgcttcggcttcggcgac 320
>gb|AF030027.1|AF030027 Equine herpesvirus 4 strain NS80567, complete genome Length = 145597 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 gacgaggacaacctcatcc 22 ||||||||||||||||||| Sbjct: 140691 gacgaggacaacctcatcc 140709 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gacgaggacaacctcatcc 22 ||||||||||||||||||| Sbjct: 117359 gacgaggacaacctcatcc 117341
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcttcggcttcggcgac 42 ||||||||||||||||||| Sbjct: 3725048 ctgcttcggcttcggcgac 3725030
>dbj|D88020.1| Rhodococcus erythropolis DNA for terminal dioxygenase, ferredoxin, ferredoxin reductase, complete cds Length = 4400 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gacgaggacaacctcatcc 22 ||||||||||||||||||| Sbjct: 4391 gacgaggacaacctcatcc 4373
>dbj|D88015.1| Rhodococcus erythropolis DNA for dihydrodiol dehydrogenase, 2,3-dihydroxy-4-phenylhexa-4,6-diene dehydrogenase, 2,3-dihydroxybiphenyl 1,2-dioxygenase, AsfK, complete and partial cds Length = 3383 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 gacgaggacaacctcatcc 22 ||||||||||||||||||| Sbjct: 138 gacgaggacaacctcatcc 120 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 886,478 Number of Sequences: 3902068 Number of extensions: 886478 Number of successful extensions: 69286 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68658 Number of HSP's gapped (non-prelim): 623 length of query: 188 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 166 effective length of database: 17,147,199,772 effective search space: 2846435162152 effective search space used: 2846435162152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
