ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet125b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 28 5.4
2CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor 28 5.4
3SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment) 28 9.1

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 85  GRRGEHVPRDPAGGPGA 135
           G RGEH P  PAG PGA
Sbjct: 797 GERGEHGPPGPAGFPGA 813



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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 85  GRRGEHVPRDPAGGPGA 135
           G RGEH P  PAG PGA
Sbjct: 797 GERGEHGPPGPAGFPGA 813



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>SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment)|
          Length = 232

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 140 SAAPGPPAGSRGTCSPRRPPTKP 72
           +AAP PPA +R + SP RP   P
Sbjct: 130 AAAPAPPAAARCSPSPPRPAALP 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,341,683
Number of Sequences: 219361
Number of extensions: 247933
Number of successful extensions: 1063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 80,573,946
effective HSP length: 22
effective length of database: 75,748,004
effective search space used: 1817952096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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