| Clone Name | baet125b05 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor | 28 | 5.4 | 2 | CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor | 28 | 5.4 | 3 | SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment) | 28 | 9.1 |
|---|
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 28.5 bits (62), Expect = 5.4 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = +1 Query: 85 GRRGEHVPRDPAGGPGA 135 G RGEH P PAG PGA Sbjct: 797 GERGEHGPPGPAGFPGA 813
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 28.5 bits (62), Expect = 5.4 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = +1 Query: 85 GRRGEHVPRDPAGGPGA 135 G RGEH P PAG PGA Sbjct: 797 GERGEHGPPGPAGFPGA 813
>SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment)| Length = 232 Score = 27.7 bits (60), Expect = 9.1 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 140 SAAPGPPAGSRGTCSPRRPPTKP 72 +AAP PPA +R + SP RP P Sbjct: 130 AAAPAPPAAARCSPSPPRPAALP 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,341,683 Number of Sequences: 219361 Number of extensions: 247933 Number of successful extensions: 1063 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1063 length of database: 80,573,946 effective HSP length: 22 effective length of database: 75,748,004 effective search space used: 1817952096 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)