ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet125a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY082350.1| Lolium perenne fructosyltransferase (FT2) mRNA, complete cds Length = 2337 Score = 50.1 bits (25), Expect = 0.005 Identities = 70/85 (82%) Strand = Plus / Plus Query: 231 gccggaccgggccggtgtgcgctgcaatgctcatgactttggccgccgtgctccttgctg 290 ||||||||||||| ||| ||| || |||| |||| |||| ||||| ||||||||| | Sbjct: 184 gccggaccgggcctctgttcgcagcgttgctgttgacgttggtcgccgcgctccttgccg 243 Query: 291 tcgccgcgctcgccggggtcaggct 315 |||||||||| || || |||||||| Sbjct: 244 tcgccgcgctggctggcgtcaggct 268
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 216 ggcgcgcgcgccctggccggaccgggc 242 |||||||||||||||||||| |||||| Sbjct: 248247 ggcgcgcgcgccctggccgggccgggc 248221
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Plus Query: 216 ggcgcgcgcgccctggccggaccgggc 242 |||||||||||||||||||| |||||| Sbjct: 151221 ggcgcgcgcgccctggccgggccgggc 151247
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 145 ccgcggcgcgacgccggcgccgg 167 ||||||||||||||||||||||| Sbjct: 2376007 ccgcggcgcgacgccggcgccgg 2375985 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gggcgcgcgcgccctggccg 234 |||||||||||||||||||| Sbjct: 1579711 gggcgcgcgcgccctggccg 1579692 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gtcgccgcgctcgccggggt 309 |||||||||||||||||||| Sbjct: 1448664 gtcgccgcgctcgccggggt 1448645
>gb|AF006000.1|AF006000 Bordetella pertussis D-3-phosphoglycerate dehydrogenase homolog (serA) and Brg1 (brg1) genes, complete cds Length = 10967 Score = 46.1 bits (23), Expect = 0.075 Identities = 26/27 (96%) Strand = Plus / Minus Query: 216 ggcgcgcgcgccctggccggaccgggc 242 |||||||||||||||||||| |||||| Sbjct: 3817 ggcgcgcgcgccctggccgggccgggc 3791
>gb|DQ267825.1| Dendrocalamopsis oldhamii vacuolar invertase BObetaFRUCT3 mRNA, complete cds Length = 2155 Score = 46.1 bits (23), Expect = 0.075 Identities = 32/35 (91%) Strand = Plus / Plus Query: 272 gccgccgtgctccttgctgtcgccgcgctcgccgg 306 ||||| ||||||||||| || |||||||||||||| Sbjct: 124 gccgcggtgctccttgccgtggccgcgctcgccgg 158
>gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete sequence Length = 111147 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 90 ctcccccttctttggattctcc 111 |||||||||||||||||||||| Sbjct: 86791 ctcccccttctttggattctcc 86770
>gb|AC091806.4| Homo sapiens chromosome X clone RP11-320G24 map p11.4, complete sequence Length = 182440 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 gcgcgcgcgccctggccggac 237 ||||||||||||||||||||| Sbjct: 33331 gcgcgcgcgccctggccggac 33351
>gb|AC091809.4| Homo sapiens chromosome X clone XXbac-11940 map p11.4, complete sequence Length = 218733 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 gcgcgcgcgccctggccggac 237 ||||||||||||||||||||| Sbjct: 102256 gcgcgcgcgccctggccggac 102276
>emb|AJ635225.1| Triticum aestivum mRNA for acid beta-fructofuranosidase precursor (inv1 gene) Length = 2250 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 275 gccgtgctccttgctgtcgccgcgctcgccggggtcaggct 315 |||||||||||| || |||||||||||||| |||||||| Sbjct: 183 gccgtgctccttatggttgccgcgctcgccggcgtcaggct 223
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 ccgcggcgcgacgccggcgcc 165 ||||||||||||||||||||| Sbjct: 3120159 ccgcggcgcgacgccggcgcc 3120139
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 gcttgccagcgagctgccggc 333 ||||||||||||||||||||| Sbjct: 3703674 gcttgccagcgagctgccggc 3703694
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 209 caggctgggcgcgcgcgccctggcc 233 |||||||| |||||||||||||||| Sbjct: 2601876 caggctggccgcgcgcgccctggcc 2601900
>gb|AC009731.6|AC009731 Homo sapiens 12 BAC RP11-438N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172749 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 77 cccaccaattcctctcccccttctt 101 |||||||||||||||||||| |||| Sbjct: 56802 cccaccaattcctctcccccatctt 56826
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 cgcgacgccggcgccggtgccgtgg 175 ||||||||||| ||||||||||||| Sbjct: 1626277 cgcgacgccggtgccggtgccgtgg 1626253
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 cggcgcgacgccggcgccgg 167 |||||||||||||||||||| Sbjct: 1208876 cggcgcgacgccggcgccgg 1208895
>ref|XM_479899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1173 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gcggcgcgacgccggcgccg 166 |||||||||||||||||||| Sbjct: 944 gcggcgcgacgccggcgccg 963
>ref|XM_473653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1821 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cgacgccggcgccggtgccg 172 |||||||||||||||||||| Sbjct: 191 cgacgccggcgccggtgccg 210
>ref|XM_472540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcgcgacgccggcgccggtgccg 172 |||||| ||||||||||||||||| Sbjct: 1297 ggcgcgccgccggcgccggtgccg 1320
>gb|AC124339.9| Mus musculus chromosome 7, clone RP24-238P16, complete sequence Length = 163620 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tcctcccaccaattcctctc 92 |||||||||||||||||||| Sbjct: 129674 tcctcccaccaattcctctc 129655
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gacgatgacgaggcccaggc 213 |||||||||||||||||||| Sbjct: 1964229 gacgatgacgaggcccaggc 1964248
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 gcggcgcgacgccggcgccggtgc 170 |||||||| ||||||||||||||| Sbjct: 492355 gcggcgcgccgccggcgccggtgc 492378
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcgcgacgccggcgccggtgccg 172 |||||| ||||||||||||||||| Sbjct: 10918 ggcgcgccgccggcgccggtgccg 10941
>emb|AL592287.4| Human DNA sequence from clone RP11-107P1 on chromosome 1, complete sequence Length = 189385 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aattcctctcccccttcttt 102 |||||||||||||||||||| Sbjct: 22490 aattcctctcccccttcttt 22471
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggcgcgcgcgccctggccgg 235 |||||||||||||||||||| Sbjct: 167244 ggcgcgcgcgccctggccgg 167225
>emb|BX248358.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 5/8 Length = 348408 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gctgtcgccgcgctcgccgg 306 |||||||||||||||||||| Sbjct: 170788 gctgtcgccgcgctcgccgg 170807
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cgacgccggcgccggtgccg 172 |||||||||||||||||||| Sbjct: 102320 cgacgccggcgccggtgccg 102339
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcgcgacgccggcgccggtg 169 |||||||||||||||||||| Sbjct: 34120 gcgcgacgccggcgccggtg 34101
>emb|AJ623275.1| Hordeum vulgare mRNA for soluble acid invertase (sai gene) Length = 2038 Score = 40.1 bits (20), Expect = 4.7 Identities = 80/100 (80%) Strand = Plus / Plus Query: 231 gccggaccgggccggtgtgcgctgcaatgctcatgactttggccgccgtgctccttgctg 290 |||||||||||||| | || || || || ||| | |||| |||||| |||| || |||| Sbjct: 126 gccggaccgggccgctctgtgccgcgattctccttacttcggccgcgctgctgctcgctg 185 Query: 291 tcgccgcgctcgccggggtcaggcttgccagcgagctgcc 330 | |||||||| ||||| |||||| | ||| || ||||||| Sbjct: 186 tggccgcgctggccggcgtcagggtcgccggccagctgcc 225
>gb|AF257937.1|AF257937 Opercularia varia internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 555 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcgtcgggcatcgtcatg 349 |||||||||||||||||||| Sbjct: 498 cggcgtcgggcatcgtcatg 479
>gb|DQ007988.1| Zea mays RFLP core bin marker probe p-npi386 (CBM4.04), complete sequence Length = 1180 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcgcgacgccggcgccggtgccg 172 ||||||||||||||||||| |||| Sbjct: 161 ggcgcgacgccggcgccggcgccg 184
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cgacgccggcgccggtgccg 172 |||||||||||||||||||| Sbjct: 29429304 cgacgccggcgccggtgccg 29429323 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcgcgacgccggcgccggtgccg 172 |||||| ||||||||||||||||| Sbjct: 21361168 ggcgcgccgccggcgccggtgccg 21361191
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gcggcgcgacgccggcgccg 166 |||||||||||||||||||| Sbjct: 1535044 gcggcgcgacgccggcgccg 1535025
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gaccgggccggtgtgcgctg 254 |||||||||||||||||||| Sbjct: 3298796 gaccgggccggtgtgcgctg 3298815
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gcggcgcgacgccggcgccg 166 |||||||||||||||||||| Sbjct: 62532 gcggcgcgacgccggcgccg 62513
>gb|AC009399.5|AC009399 Homo sapiens chromosome 14 clone RP11-368K8 containing KIAA0998 gene, partial cds, complete sequence Length = 185964 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 aattcctctcccccttcttt 102 |||||||||||||||||||| Sbjct: 108332 aattcctctcccccttcttt 108313
>dbj|AK106337.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G03, full insert sequence Length = 1384 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcgcgacgccggcgccggtgccg 172 |||||| ||||||||||||||||| Sbjct: 951 ggcgcgccgccggcgccggtgccg 974
>dbj|AK072050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110C07, full insert sequence Length = 1340 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 ggcgcgacgccggcgccggtgccg 172 |||||| ||||||||||||||||| Sbjct: 933 ggcgcgccgccggcgccggtgccg 956
>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence Length = 182378 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 attagcagaggtgataatcg 67 |||||||||||||||||||| Sbjct: 64641 attagcagaggtgataatcg 64622
>gb|AC007627.3|AC007627 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence Length = 157000 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 accttcttctcgttcttgtc 44 |||||||||||||||||||| Sbjct: 12947 accttcttctcgttcttgtc 12928
>dbj|AK068074.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132A21, full insert sequence Length = 4615 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cgacgccggcgccggtgccg 172 |||||||||||||||||||| Sbjct: 3350 cgacgccggcgccggtgccg 3331
>dbj|AK065769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G18, full insert sequence Length = 2259 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cgacgccggcgccggtgccg 172 |||||||||||||||||||| Sbjct: 253 cgacgccggcgccggtgccg 272
>gb|AC007399.1|AC007399 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence Length = 105223 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 accttcttctcgttcttgtc 44 |||||||||||||||||||| Sbjct: 69886 accttcttctcgttcttgtc 69867
>emb|AL133445.4|CNS01DV1 Human chromosome 14 DNA sequence BAC R-1046B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190946 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gcggcgcgacgccggcgccg 166 |||||||||||||||||||| Sbjct: 127154 gcggcgcgacgccggcgccg 127173
>emb|AL645583.12| Mouse DNA sequence from clone RP23-12N20 on chromosome 11, complete sequence Length = 67643 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ccaggctgggcgcgcgcgcc 227 |||||||||||||||||||| Sbjct: 35335 ccaggctgggcgcgcgcgcc 35316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,231,028 Number of Sequences: 3902068 Number of extensions: 3231028 Number of successful extensions: 60249 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58335 Number of HSP's gapped (non-prelim): 1914 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
