Clone Information

BLAST Search Result

Clone Name	baet124e09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GRPA_MEDFA (Q09134) Abscisic acid and environmental stress-induc...	41	9e-04
2	DBP2_ASPOR (Q2U070) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)	34	0.10
3	DBP2_EMENI (Q5B0J9) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)	33	0.14
4	SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialopro...	33	0.14
5	DDR48_YEAST (P18899) Stress protein DDR48 (DNA damage-responsive...	33	0.18
6	C11BB_BACTV (Q9ZIU5) Pesticidal crystal protein cry11Bb (Insecti...	33	0.23
7	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	33	0.23
8	DBP2_SCHPO (P24782) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)...	32	0.30
9	CORA_MEDSA (Q07202) Cold and drought-regulated protein CORA	32	0.30
10	ERF2_PICPI (P23637) Eukaryotic peptide chain release factor GTP-...	32	0.40
11	FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog...	32	0.40
12	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	32	0.52
13	YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i...	31	0.68
14	GRP9_DAUCA (P37703) Glycine-rich protein DC9.1	31	0.88
15	GRP1_CHERU (P11898) Glycine-rich protein HC1	31	0.88
16	K0552_HUMAN (O60299) Protein KIAA0552	31	0.88
17	HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-l...	31	0.88
18	ROAB_ARTSA (P80350) Heterogeneous nuclear ribonucleoprotein A/B ...	30	1.2
19	SIAL_PIG (P31936) Bone sialoprotein-2 (Bone sialoprotein II) (BS...	30	1.2
20	SIAL_BOVIN (Q28862) Bone sialoprotein-2 precursor (Bone sialopro...	30	1.2
21	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	30	1.2
22	VLPB_MYCHR (P29229) Variant surface antigen B precursor (VLPB pr...	30	1.2
23	NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (...	30	1.5
24	DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)	30	1.5
25	PNS1_YARLI (Q6C938) Protein PNS1	30	1.5
26	MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (A...	30	1.5
27	FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)	30	1.5
28	NOLA1_XENTR (Q5RJV1) H/ACA ribonucleoprotein complex subunit 1-l...	30	2.0
29	PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS1...	30	2.0
30	DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (N...	30	2.0
31	DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)	30	2.0
32	HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-l...	30	2.0
33	DBP2_CANAL (Q59LU0) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)	30	2.0
34	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	29	2.6
35	RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6....	29	2.6
36	C20AA_BACUF (O32321) Pesticidal crystal protein cry20Aa (Insecti...	29	2.6
37	LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1	29	2.6
38	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	29	2.6
39	DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (N...	29	2.6
40	NIFD_AZOVI (P07328) Nitrogenase molybdenum-iron protein alpha ch...	29	2.6
41	ZN330_DROME (Q9VAU9) Zinc finger protein 330 homolog (Nucleolar ...	29	2.6
42	DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-)	29	2.6
43	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	29	2.6
44	FA98A_PONPY (Q5R679) Protein FAM98A	29	3.4
45	DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-depen...	29	3.4
46	DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-depen...	29	3.4
47	YQ53_CAEEL (Q09249) Hypothetical protein C16C10.3	29	3.4
48	FA98A_HUMAN (Q8NCA5) Protein FAM98A	29	3.4
49	ILF3_BRARE (Q6NXA4) Interleukin enhancer-binding factor 3 homolog	28	4.4
50	SWC5_YEAST (P38326) SWR1-complex protein 5	28	4.4
51	DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)	28	4.4
52	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	28	4.4
53	IF2_DESVH (Q72ER1) Translation initiation factor IF-2	28	4.4
54	CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25	28	5.7
55	GRP1_TOBAC (P23137) Glycine-rich protein precursor	28	5.7
56	ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-...	28	5.7
57	SEC9_KLULA (Q6CSD1) Protein transport protein SEC9	28	5.7
58	IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 s...	28	7.5
59	YXCE_BACSU (P46335) Hypothetical protein yxcE	28	7.5
60	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	28	7.5
61	VIT1_AEDAE (Q16927) Vitellogenin A1 precursor (VG) (PVG1) [Conta...	28	7.5
62	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	28	7.5
63	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	28	7.5
64	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	28	7.5
65	SSB_AGRT5 (Q8UF87) Single-stranded DNA-binding protein (SSB) (He...	28	7.5
66	DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog...	28	7.5
67	ZN330_CRIGR (O70524) Zinc finger protein 330 (Nucleolar cysteine...	28	7.5
68	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	28	7.5
69	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	28	7.5
70	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	28	7.5
71	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	27	9.8
72	PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA ...	27	9.8
73	Y1836_MYCTU (Q50597) Hypothetical protein Rv1836c/MT1884	27	9.8
74	PSP2_YEAST (P50109) Protein PSP2 (Mitochondrial regulator of spl...	27	9.8
75	FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)	27	9.8
76	BUD14_YEAST (P27637) Bud site selection protein BUD14	27	9.8

>GRPA_MEDFA (Q09134) Abscisic acid and environmental stress-inducible protein|
          Length = 159

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GY+   GGYN  G  ++  G   +G   Y+   G GGYN   G   + G GY   G
Sbjct: 52  GYNHGGGGYNNGGGYNHGGGGYNNGGGGYNH--GGGGYNNGGGGYNHGGGGYNNGG 105



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GY+   GGYN  G      GY   G  ++    G GGYN   G   + G GY   G
Sbjct: 40  GYNHGGGGYNGGGYNHGGGGYNNGGGYNH----GGGGYNNGGGGYNHGGGGYNNGG 91



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEY 303
           GY+   GGYN  G      GY   G      + G GGYN   G  +Y
Sbjct: 100 GYNNGGGGYNHGGG-----GYNGGG-----YNHGGGGYNHGGGGCQY 136

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>DBP2_ASPOR (Q2U070) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 554

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
 Frame = +1

Query: 157 NEGYDR-REGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           N GY R +   Y   G   Y  GY    ++ Y      GGY    G   Y G GY   G
Sbjct: 4   NGGYQRDQRDSYRNGGGGGYSNGYSNGNSNGYSGGGSGGGYGGGYGGGGY-GGGYGGRG 61



 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 211 YDTGYKKSGTDDYDRSSGRGGYNK--STGDDE-YSGAG 315
           Y+ GY++   D Y R+ G GGY+   S G+   YSG G
Sbjct: 3   YNGGYQRDQRDSY-RNGGGGGYSNGYSNGNSNGYSGGG 39

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>DBP2_EMENI (Q5B0J9) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)|
          Length = 563

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYS--GAGYKK 324
           GY  R GGY   G   Y  GY   G        G GG     G D     G+G KK
Sbjct: 34  GYGGRGGGYGGGGGSGYGGGYGGGGYGGGGYGRGGGGAGAGAGGDRMGNLGSGLKK 89



 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYD-RSSGRGG-----YNKSTGDDEYSGAGYKK 324
           GY R    Y   G   Y  GY       Y  R  G GG     Y    G   Y G GY +
Sbjct: 9   GYQR--DSYRSGGGGGYSNGYSNGHGGGYGGRGGGYGGGGGSGYGGGYGGGGYGGGGYGR 66

Query: 325 SG 330
            G
Sbjct: 67  GG 68

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>SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialoprotein II) (BSP|
           II) (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 317

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = +1

Query: 178 EGGYNKSGAEDYDTGYK-------KSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           EG Y  +GA DYD GY+       +   D+Y        Y K  G D Y G  Y
Sbjct: 260 EGEYEYTGANDYDNGYEIYESENGEPRGDNYRAYEDEYSYFKGQGYDGYDGQNY 313

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>DDR48_YEAST (P18899) Stress protein DDR48 (DNA damage-responsive protein 48)|
           (DDRP 48) (YP 75) (Flocculent-specific protein)
          Length = 429

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEY 303
           N +     D   G  N++      + Y  S  DD   SS RGG N+  GDD+Y
Sbjct: 377 NDSYGSNNDDSYGSSNRNKNSYGSSNYGSSNNDDSYGSSNRGGRNQYGGDDDY 429



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/61 (26%), Positives = 22/61 (36%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKK 324
           N   + G       Y  +  + Y +  K   +  Y  SS    Y  S  DD Y  +  KK
Sbjct: 251 NNDDSYGSSNNNDSYGSNNDDSYGSSNKNKSS--YGSSSNDDSYGSSNNDDSYGSSNKKK 308

Query: 325 S 327
           S
Sbjct: 309 S 309

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>C11BB_BACTV (Q9ZIU5) Pesticidal crystal protein cry11Bb (Insecticidal|
           delta-endotoxin CryXIB(b)) (Crystaline entomocidal
           protoxin) (84 kDa crystal protein)
          Length = 750

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRG---GYNKSTGDDEYSG 309
           N+ ++ GY++   GYN +  ++  +GY++   D+Y++++  G   GYN +   +  SG
Sbjct: 695 NQNTSSGYEQ---GYNDNYNQNTSSGYEQGYNDNYNQNTSSGYEQGYNDNYNQNTSSG 749



 Score = 30.8 bits (68), Expect = 0.88
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRG---GYNKSTGDDEYSG 309
           N TS+ GY++   GYN +  ++  +GY++   D+Y++++  G   GYN +   +  SG
Sbjct: 664 NNTSS-GYEQ---GYNDNYNQNTSSGYEQGYNDNYNQNTSSGYEQGYNDNYNQNTSSG 717

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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 21/56 (37%), Positives = 21/56 (37%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GY    GGY   G E    GY   G     R  G GGY      D   G GY  SG
Sbjct: 109 GYGGGGGGYGGGGREG---GYSGGGGGYSSRGGGGGGYGGGGRRDGGEGGGYGGSG 161



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/55 (34%), Positives = 21/55 (38%)
 Frame = +1

Query: 151 TSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           T NE   R  GG    G      GY+  G   Y    G GGY     +  YSG G
Sbjct: 80  TVNEAQSRGSGG--GGGGRGGGGGYRSGGGGGY--GGGGGGYGGGGREGGYSGGG 130

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>DBP2_SCHPO (P24782) ATP-dependent RNA helicase dbp2 (EC 3.6.1.-) (p68-like|
           protein)
          Length = 550

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 166 YDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYN 279
           Y+ +E GYN  G   Y  GY+    ++Y R  GRGG+N
Sbjct: 12  YNGKEDGYNSRGR--YGGGYR----NNYSRGGGRGGFN 43

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>CORA_MEDSA (Q07202) Cold and drought-regulated protein CORA|
          Length = 204

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 20/56 (35%), Positives = 21/56 (37%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GY    GGYN  G      GY   G        G GGYN   G   + G GY   G
Sbjct: 77  GYHNGGGGYNHGGG-----GYNGGGGHG---GHGGGGYNGGGGHGGHGGGGYNGGG 124



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +1

Query: 148 KTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKS 327
           KT+     +  GGYN  G  +   GY   G  ++    G GGY+   G   + G GY   
Sbjct: 41  KTNEVNDAKYGGGYNHGGGYN-GGGYNHGGGYNH----GGGGYHNGGGGYNHGGGGYNGG 95

Query: 328 G 330
           G
Sbjct: 96  G 96

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>ERF2_PICPI (P23637) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
           (Omnipotent suppressor protein 2)
          Length = 741

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGA------EDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYS 306
           N  +  GY    GGYN S          Y+T   + G  +Y+ +     YN +   +   
Sbjct: 78  NYNNRGGYSNNRGGYNNSNRGGYSNYNSYNTNSNQGGYSNYNNNYANNSYNNNNNYNNNY 137

Query: 307 GAGY 318
             GY
Sbjct: 138 NQGY 141

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>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +1

Query: 154 SNEGYDRRE--GGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKS 327
           S  GY  ++  GG    G    D G +  G        G GGYN+S+G  E  G G  + 
Sbjct: 190 SGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRG 249

Query: 328 G 330
           G
Sbjct: 250 G 250

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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTG----YKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GGY   G   Y  G    Y   G   Y+R SG  G     G   Y G G ++ G
Sbjct: 99  GGYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGG 152



 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = +1

Query: 163 GYDRREGGYNK---SGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           GY+RR GGY      G   Y  G ++ G          GGY    G   Y G G
Sbjct: 124 GYERRSGGYGSGGGGGGRGYGGGGRREG----------GGYGGGDG-GSYGGGG 166

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>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKK 324
           GYDRR    +   + + D GY+++   D D +  R  Y  S    E+S   Y+K
Sbjct: 192 GYDRRRNSRDFP-SNNKDGGYRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRK 244

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>GRP9_DAUCA (P37703) Glycine-rich protein DC9.1|
          Length = 144

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
 Frame = +1

Query: 142 ENKTSNEGYDRREGGYNKSGAEDYDTGYKKSG---TDDYDRSSGRGGYNKSTGDDEYSGA 312
           E     EGY+   G +N  G  +   GY   G    +     +G GGYN   G     G 
Sbjct: 30  ETAAKTEGYNNGGGYHNGGGGYNNGGGYHNGGGGYNNGGGYHNGGGGYNNG-GGYHNGGG 88

Query: 313 GYKKSG 330
           GY   G
Sbjct: 89  GYNNGG 94



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +1

Query: 163 GYDRREGGYNKSGA-EDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           GY    GGYN  G   +   GY   G       +G GGYN   G     G+ Y
Sbjct: 69  GYHNGGGGYNNGGGYHNGGGGYNNGG----GHHNGGGGYNNGGGHHGGGGSCY 117

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>GRP1_CHERU (P11898) Glycine-rich protein HC1|
          Length = 144

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
 Frame = +1

Query: 142 ENKTSNEGYDRREGGYNKSGAEDYDTGYKKSG---TDDYDRSSGRGGYNKSTGDDEYSGA 312
           E     EGY+   G +N  G  +   GY   G    +     +G GGYN   G     G 
Sbjct: 30  ETAAKTEGYNNGGGYHNGGGGYNNGGGYHNGGGGYNNGGGYHNGGGGYNNG-GGYHNGGG 88

Query: 313 GYKKSG 330
           GY   G
Sbjct: 89  GYNNGG 94



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +1

Query: 163 GYDRREGGYNKSGA-EDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           GY    GGYN  G   +   GY   G       +G GGYN   G   Y G G
Sbjct: 69  GYHNGGGGYNNGGGYHNGGGGYNNGG----GHHNGGGGYNNGGG---YHGGG 113

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>K0552_HUMAN (O60299) Protein KIAA0552|
          Length = 673

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           N+     Y    GG +  G+     GY+  GT D  R+S + G + S G   + G+G
Sbjct: 249 NRIGTASYGSGSGGSSGGGS-----GYQDLGTSDSGRASSKSGSSSSMGRPGHLGSG 300

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>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
          Length = 859

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKS 285
           S  G     GG+N+SG   Y+     +   D + S+ RG YN++
Sbjct: 651 SGGGGGNYRGGFNRSGGGGYNQNRWGNNNRDNNNSNNRGNYNRA 694

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>ROAB_ARTSA (P80350) Heterogeneous nuclear ribonucleoprotein A/B (P38)|
           (Fragments)
          Length = 195

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 262 GRGGYNKSTGDDEYSGAGYKKSG 330
           G GGY    GDD Y GAGY   G
Sbjct: 142 GYGGYGGGYGDDAYGGAGYDYYG 164

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>SIAL_PIG (P31936) Bone sialoprotein-2 (Bone sialoprotein II) (BSP II)|
           (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 300

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
 Frame = +1

Query: 148 KTSNEGYDRREGGYNKSGAEDYDTGYK--------------KSGTDDYDRSSGRGGYNKS 285
           KT+   Y   EG Y ++GA +YD GY+              ++  D+Y    GR  YN  
Sbjct: 239 KTTTPEY---EGEYEQTGAHEYDNGYEIYESENGEPRGDSYRAYEDEYSYYKGR-SYNSY 294

Query: 286 TGDDEY 303
            G D Y
Sbjct: 295 GGHDYY 300

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>SIAL_BOVIN (Q28862) Bone sialoprotein-2 precursor (Bone sialoprotein II) (BSP|
           II) (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 310

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYK----KSGT---DDYDRSSGRGGYNKSTGDDEYSGAGY 318
           G Y ++G  +YD GY+    ++G    D+Y        Y K  G D Y G  Y
Sbjct: 254 GEYEQTGTNEYDNGYEIYESENGDPRGDNYRAYEDEYSYYKGRGYDSYDGQDY 306

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>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYD--RSSGRGGYNKSTGDDEYSGAGY 318
           GYD   GG    G    D G     + +Y   +S G  G N+S G   Y G  Y
Sbjct: 274 GYDNYGGGNYGGGGNYNDFGNYNQQSSNYGPMKSGGNFGGNRSMGGGPYGGGNY 327

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>VLPB_MYCHR (P29229) Variant surface antigen B precursor (VLPB prolipoprotein)|
          Length = 174

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           G D ++ G   +G++  D+G K +G+D  D  SG  G    + D    G G
Sbjct: 114 GSDSQDSGAKGTGSDSQDSGAKGTGSDSQD--SGAKGTGSDSQDSGAKGTG 162



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           G D ++ G   +G++  D+G K +G+D  D  SG  G    + D    G G
Sbjct: 102 GSDSQDSGAKGTGSDSQDSGAKGTGSDSQD--SGAKGTGSDSQDSGAKGTG 150



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           G D ++ G   +G++  D+G K +G+D  D  SG  G    + D    G G
Sbjct: 90  GSDSQDSGAKGTGSDSQDSGAKGTGSDSQD--SGAKGTGSDSQDSGAKGTG 138



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSG 264
           G D ++ G   +G++  D+G K +G+D  D  +G
Sbjct: 138 GSDSQDSGAKGTGSDSQDSGAKGTGSDSQDSGNG 171



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           GG   +G++  D+G K +G+D  D  SG  G    + D    G G
Sbjct: 84  GGQTGTGSDSQDSGAKGTGSDSQD--SGAKGTGSDSQDSGAKGTG 126

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>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 217

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTG---------YKKSGTDDYDRSSGRGGYNKSTGDDE 300
           GG+N+ G+ ++  G         ++  G   + R  GRGG+NK  G D+
Sbjct: 18  GGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNK--GQDQ 64

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>DED1_CANGA (Q8TFK8) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 617

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 175 REGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGA 312
           RE  +++SG+     G + S T DY +  G G + +++ +  +  A
Sbjct: 537 REVSFSRSGSNRSTRGNRSSNTRDYRKHGGNGSFGQNSRNSSWGSA 582

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>PNS1_YARLI (Q6C938) Protein PNS1|
          Length = 571

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 157 NEGYDRREGGYNKSGAEDYDTGYKKS-GTDDYDRSSGRGGYNKSTGDD 297
           N  YD  +GGYN++  +DY   Y  S G    D     GGY  +  D+
Sbjct: 32  NAEYDTHQGGYNQNQNQDY---YNHSQGGYQMDNMGQHGGYQGNPNDN 76

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>MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (ATP-dependent|
            RNA helicase mle) (Protein male-less) (Protein no action
            potential)
          Length = 1293

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +1

Query: 163  GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSG-----RGGYNKSTGDDEYSGAGYK 321
            GY    GGY  +G    + G  ++    Y  + G     RGG+  S   +  SG G++
Sbjct: 1225 GYGNNAGGYGNNGGYGNNGGGYRNNGGGYGNNGGGYGNKRGGFGDSFESNRGSGGGFR 1282



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +1

Query: 148  KTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSG---RGGYNKSTGDDEYSGAGY 318
            +T   GY    GGY  +G      GY   G    + + G    GGY  + G    +G GY
Sbjct: 1199 RTFGGGYGNNGGGYGNNGG-----GYGNIGGGYGNNAGGYGNNGGYGNNGGGYRNNGGGY 1253

Query: 319  KKSG 330
              +G
Sbjct: 1254 GNNG 1257

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>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYKKSGTDDYDRS-SGRGGYNKSTGDDEYSGAGYKKSG 330
           GGY   G +D   GY     D   R   G GGYN+S+G  E  G G  + G
Sbjct: 189 GGY---GNQDQSGGYGGGQQDRGGRGRGGGGGYNRSSGGYEPRGRGGGRGG 236

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>NOLA1_XENTR (Q5RJV1) H/ACA ribonucleoprotein complex subunit 1-like protein|
          Length = 218

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 172 RREGGYNKSGAEDYDTGY---KKSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           R  GG+N+ G      G    +  G   Y +  GRGG+ +  G   ++  GY
Sbjct: 4   RGRGGFNRGGGGGRGGGGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGY 55

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>PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS10 precursor|
          Length = 801

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 175 REGGYNKSGAEDYDTG-YKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           R GG+  +G    D G +  SG      S G GG +KS GD    GAG
Sbjct: 264 RSGGFGGAGGAGGDAGMFFGSGG-----SGGAGGISKSVGDSAAGGAG 306

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>DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
            helicase II) (NDH II) (DEAH box protein 9)
          Length = 1287

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +1

Query: 181  GGYNKSGAEDY--DTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
            GGY      DY  ++G    G+  + R  GRGGY          G GY
Sbjct: 1240 GGYRGMSGGDYRGESGGGYRGSGGFQRGGGRGGYGGGYFGQGRGGGGY 1287

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>DED1_KLULA (Q6CLR3) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 627

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKK-SGTDDYDRSSGRGGYNKS 285
           N+ S  G +RR GGY++ G    + G     G +D   S G GG N S
Sbjct: 55  NERSFFGNERRGGGYSRGGRGSVNWGGSNWGGRNDSRGSGGYGGGNSS 102

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>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
           (Adenovirus early region 1B-associated protein 5)
           (E1B-55 kDa-associated protein 5) (E1B-AP5)
          Length = 856

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKS 285
           GG+N+SG   Y      +   D + S+ RG YN++
Sbjct: 657 GGFNRSGGGGYSQNRWGNNNRDNNNSNNRGSYNRA 691

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>DBP2_CANAL (Q59LU0) ATP-dependent RNA helicase DBP2 (EC 3.6.1.-)|
          Length = 562

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDD-EYSGAGYKKSG 330
           +N GY+ R GG    G   Y  G  + G D Y      GGY     D   Y G  +   G
Sbjct: 4   NNGGYNNRNGGSYGGG---YGGGGSRGGRDGYSGGGRGGGYGGGDRDQGGYRGGRFSGGG 60

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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
 Frame = +1

Query: 175 REGGYN--KSGAEDYDTGYKKSGTDDYDRSSGR-----GGYNKSTGDDEYSGAG 315
           R GGY    SG   +  G +  G  D    S R     GGY  S+G  +Y G+G
Sbjct: 88  RRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGGSSGSRDYYGSG 141

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>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 690

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRG-----GYNKSTGDDEYSG 309
           + +G DRR  G       D D    +   DD  R +GRG     G ++  G D  +G
Sbjct: 169 AQQGQDRRSDGAQGEDGADADRRGDREDRDDNGRENGRGRNGRNGRDRDNGRDRENG 225

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>C20AA_BACUF (O32321) Pesticidal crystal protein cry20Aa (Insecticidal|
           delta-endotoxin CryXXA(a)) (Crystaline entomocidal
           protoxin) (86 kDa crystal protein)
          Length = 753

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 YDRREGGYNKSGAEDYDTGYKKSGTDDYDRS 258
           Y      YN++ +  YD GY  + +D YD+S
Sbjct: 683 YQPSYDNYNQNASGTYDDGYNPNASDSYDQS 713



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSG 309
           N+ ++  YD    GYN + ++ YD  Y  + + + +    +G YN +   D++SG
Sbjct: 691 NQNASGTYD---DGYNPNASDSYDQSYTNNYSQNTNSMYDQGYYNNNY--DQHSG 740

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>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1|
          Length = 244

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 205 EDYDTGYKKS-GTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           + +  GY ++ G++ Y +  GRGGY + +G   Y G GY   G
Sbjct: 53  QPHSQGYARAEGSNGYRQPYGRGGY-RGSGGRYYGGYGYGHGG 94

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>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GY  R GG    G   Y  G ++ G        GRGG    +G   Y G G ++ G
Sbjct: 97  GYGGRGGGGYGGGGGGY--GDRRGGGGYGSGGGGRGGGGYGSGGGGYGGGGGRRDG 150

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>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
            helicase II) (NDH II) (DEAH box protein 9) (mHEL-5)
          Length = 1380

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
 Frame = +1

Query: 163  GYDRREGGYNKSG---AEDYDT--------------GYKKSGTDDYDRSSGRGGYNKSTG 291
            GY    GGY   G    E Y                GY+      Y  + G G Y  S+G
Sbjct: 1285 GYGGGSGGYGGGGYGGGEGYSISPNSYRGNYGGGGGGYRGGSQGGYRNNFG-GDYRGSSG 1343

Query: 292  DDEYSGAGYKKSG 330
            D   SG GY+ SG
Sbjct: 1344 DYRGSGGGYRGSG 1356

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>NIFD_AZOVI (P07328) Nitrogenase molybdenum-iron protein alpha chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase)
          Length = 491

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDD 297
           G Y   G E   TGY+ +  DDYDR+    G +    DD
Sbjct: 364 GAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDD 402

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>ZN330_DROME (Q9VAU9) Zinc finger protein 330 homolog (Nucleolar autoantigen 36|
           homolog)
          Length = 315

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 151 TSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           T +  + R++ G N    E Y  GY  +G   Y   +  GGY+    DDE    G
Sbjct: 228 TRSHKFGRQQQGGNSDDEEGYG-GYYGAGGSGYYGGAASGGYSYGGDDDEDESDG 281



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDY-----DTGYKKSGTDDYDRSSGRGGYNKSTGDDE 300
           N    EGY    GGY  +G   Y       GY   G DD D S   G Y+  + +D+
Sbjct: 241 NSDDEEGY----GGYYGAGGSGYYGGAASGGYSYGGDDDEDESD--GDYDDESDEDD 291

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>DBP2_NEUCR (Q7SBC6) ATP-dependent RNA helicase dbp-2 (EC 3.6.1.-)|
          Length = 562

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = +1

Query: 157 NEGYDRREGGYNKS-----GAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYS--GAG 315
           + GYDR  GGY+ +     G+  Y  G    G        G GGY    G D  S  GAG
Sbjct: 21  SNGYDRNGGGYSNNYSSHGGSNGYGGG--GGGYGGGGGGYGGGGYGGGGGGDRMSALGAG 78

Query: 316 YKK 324
            +K
Sbjct: 79  LQK 81



 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
 Frame = +1

Query: 181 GGYNK--SGAEDYDTGYKKSG---TDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GGY     G   Y  GY ++G   +++Y    G  GY    G     G GY   G
Sbjct: 8   GGYGGRGGGGGGYSNGYDRNGGGYSNNYSSHGGSNGYGGGGGGYGGGGGGYGGGG 62

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>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 142 ENKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNK 282
           ++  S  GY+R  G  +++   D D  ++  G    +   GRGGYN+
Sbjct: 479 DDHNSGYGYNRDRGDRDRND-RDRDYNHRSGGNHRRNGRGGRGGYNR 524

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>FA98A_PONPY (Q5R679) Protein FAM98A|
          Length = 518

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAED--YDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKS 327
           S  G   ++GGY  SG +   Y  G+   G     +  G GG+  S+    Y+G+GY+  
Sbjct: 388 SGGGGGYQDGGYRDSGFQPGGYHGGHSSGGY----QGGGYGGFQTSSS---YTGSGYQGG 440

Query: 328 G 330
           G
Sbjct: 441 G 441

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>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 205 EDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           EDY +G K++GTD  DR   R   ++S   D     G
Sbjct: 11  EDYPSGKKRAGTDGKDRERDRDREDRSKDRDRERDRG 47

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>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 205 EDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           EDY +G K++GTD  DR   R   ++S   D     G
Sbjct: 11  EDYPSGKKRAGTDGKDRDRDRDREDRSKDRDRERDRG 47

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>YQ53_CAEEL (Q09249) Hypothetical protein C16C10.3|
          Length = 1032

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 145 NKTSN-EGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEY 303
           NK S  +G     GGY +S + D   GY+   +D  D    RG Y    G+D Y
Sbjct: 297 NKLSEMKGGGGGRGGYGRSDSRDSRGGYRGGRSDSRD---FRGVYGNRGGNDRY 347

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>FA98A_HUMAN (Q8NCA5) Protein FAM98A|
          Length = 519

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAED--YDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKS 327
           S  G   ++GGY  SG +   Y  G+   G     +  G GG+  S+    Y+G+GY+  
Sbjct: 389 SGGGGGYQDGGYRDSGFQPGGYHGGHSSGGY----QGGGYGGFQTSSS---YTGSGYQGG 441

Query: 328 G 330
           G
Sbjct: 442 G 442

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>ILF3_BRARE (Q6NXA4) Interleukin enhancer-binding factor 3 homolog|
          Length = 833

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GG+N+ G   Y  G   SG + Y+     GG   S      S  G   +G
Sbjct: 646 GGFNQGGYGTYGYGGNNSGYNFYNNGGSNGGSVASNQGTNQSSGGAAATG 695

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>SWC5_YEAST (P38326) SWR1-complex protein 5|
          Length = 303

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 157 NEGYDRREGGYNKSGAEDYDTGYKK--SGTDDYDRSSGRGGYNKSTGDDE 300
           NE  D  E GY +   ED+     K   G+DD D S G   Y+     D+
Sbjct: 11  NEKEDEDEDGYIEEEDEDFQPEKDKLGGGSDDSDASDGGDDYDDGVNRDK 60

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>DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 672

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTG 291
           +N GY+   GG+N  G  +     + +    +    GRGG+N   G
Sbjct: 80  NNGGYNNNRGGFNNGGFNN-----RGNYNQSFGGRGGRGGFNNGGG 120

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>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSS---GRGGYNKSTGDDEYSGAGYKK 324
           S  G+    GG+   G      GY + G   Y R      RGGY+   G  +    GY +
Sbjct: 306 SRGGFGGPRGGFG--GPRGGYGGYSRGGYGGYSRGGYGGSRGGYDSPRGGYDSPRGGYSR 363

Query: 325 SG 330
            G
Sbjct: 364 GG 365

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>IF2_DESVH (Q72ER1) Translation initiation factor IF-2|
          Length = 1079

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 172 RREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGA 312
           +REGGY + GA   + GY+ +G          GGY  + G     GA
Sbjct: 373 QREGGY-RPGAPRPEGGYRPAGGAPRPEGQREGGYRPAGGPPRPGGA 418

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>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 172 RREGGYNKS-GAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEY 303
           RRE   + S    D D GY++S  ++ DR S R    +S   D Y
Sbjct: 217 RRERNRDPSPSVSDDDRGYRQSSREERDRKSSREEGGRSRSRDRY 261

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>GRP1_TOBAC (P23137) Glycine-rich protein precursor|
          Length = 109

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
 Frame = +1

Query: 262 GRGGYNKSTGDDEY------SGAGYKKSG 330
           GRGGYN   GD  Y       G GYK+ G
Sbjct: 47  GRGGYNDVGGDGYYGGGRGRGGGGYKRRG 75

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>ERF2_DEBHA (Q9HGI6) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 701

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 163 GYDRREGGYNKSGAEDYDTGYK--KSGTDDYDRSSGRGGYNKSTGDDEYS 306
           GY      Y++ G ++Y+ GY+    G   Y +++ RGGYN       Y+
Sbjct: 67  GYQGGYQNYSQGGYQNYNQGYQNYNQGYQGY-QNNNRGGYNNYNNRGGYN 115



 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 157 NEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYN 279
           N+GY     GY          GY+ +    Y+  + RGGYN
Sbjct: 84  NQGYQNYNQGYQ---------GYQNNNRGGYNNYNNRGGYN 115

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>SEC9_KLULA (Q6CSD1) Protein transport protein SEC9|
          Length = 556

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 187 YNKSGAEDYDTGYK---KSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           Y  + A  YDTGY    +   + Y  S      NKS G + YSG  Y
Sbjct: 128 YGNASASPYDTGYNAPLQQNNNPYG-SMNNSYSNKSYGSNSYSGDTY 173

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>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 935

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 217 TGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           TGY       + ++ G GGY++  G     G GY+ SG
Sbjct: 874 TGYGGGRALSFSQAGGSGGYSRGRGT---GGGGYQNSG 908

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>YXCE_BACSU (P46335) Hypothetical protein yxcE|
          Length = 216

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 190 NKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKK 324
           ++S +  Y   YK S    Y   S        T DD  S    KK
Sbjct: 40  SRSSSSSYSGSYKSSPKSSYSSGSSSSSKKSKTSDDSSSSISLKK 84

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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 175 REGGYNKSGAEDYDTGYKKSGTDDYDRS---SGRGGYNKSTGDDEYSGAG 315
           R G  N  G      G    G D++ R    SGRGG+  S G   Y G+G
Sbjct: 195 RSGSGNFGGGRGGGFG----GNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 240

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>VIT1_AEDAE (Q16927) Vitellogenin A1 precursor (VG) (PVG1) [Contains: Vitellin|
           light chain (VL); Vitellin heavy chain (VH)]
          Length = 2148

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 166 YDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           Y+    GYN  G + YD GYK  G D     +G  GY    G  +Y+  GY
Sbjct: 19  YENSFKGYNP-GYKGYDAGYKGYGYD-----AGYKGYGYDAG-YKYNNQGY 62

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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 175 REGGYNKSGAEDYDTGYKKSGTDDYDRS---SGRGGYNKSTGDDEYSGAG 315
           R G  N  G      G    G D++ R    SGRGG+  S G   Y G+G
Sbjct: 195 RSGSGNFGGGRGGGFG----GNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 240

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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 175 REGGYNKSGAEDYDTGYKKSGTDDYDRS---SGRGGYNKSTGDDEYSGAG 315
           R G  N  G      G    G D++ R    SGRGG+  S G   Y G+G
Sbjct: 195 RSGSGNFGGGRGGGFG----GNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 240

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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 175 REGGYNKSGAEDYDTGYKKSGTDDYDRS---SGRGGYNKSTGDDEYSGAG 315
           R G  N  G      G    G D++ R    SGRGG+  S G   Y G+G
Sbjct: 195 RSGSGNFGGGRGGGFG----GNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 240

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>SSB_AGRT5 (Q8UF87) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 173

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 172 RREGGYNKSGAEDYDTGYKKSGTDDYD-RSSGRGGYNKSTG 291
           R EGG  +SG  D+  G        YD +SS RGG ++  G
Sbjct: 117 RGEGGGGRSGGGDFGGGNDYGSGGGYDQQSSPRGGSSRGGG 157

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>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2|
           (Dishevelled-2) (DSH homolog 2)
          Length = 736

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 157 NEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAG 315
           + G  R +GG  ++G  +      KSG+      S RGG  +  G+   +G G
Sbjct: 591 SSGSTRSDGGAGRTGRPEERAPESKSGSGSESELSSRGGSLRRGGEPGGTGDG 643

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>ZN330_CRIGR (O70524) Zinc finger protein 330 (Nucleolar cysteine-rich protein)|
           (Nucleolar autoantigen 36)
          Length = 317

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 226 KKSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           +++G ++ D +SG   Y K+   DEY+  GY
Sbjct: 237 RQTGGEEGDGASGYDAYWKNLSSDEYADTGY 267



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 166 YDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDE 300
           + R+ GG    GA  YD  +K   +D+Y  +    GY+    +DE
Sbjct: 235 FGRQTGGEEGDGASGYDAYWKNLSSDEYADT----GYHDDEEEDE 275

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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 REGG---YNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKS-TGDDEYSGAG 315
           R GG   Y+  G+ DYD GY      D    SGR  +      DD+Y G G
Sbjct: 251 RYGGRDRYDDRGSRDYDRGY------DSRIGSGRRAFGSGYRRDDDYRGGG 295

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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 REGG---YNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKS-TGDDEYSGAG 315
           R GG   Y+  G+ DYD GY      D    SGR  +      DD+Y G G
Sbjct: 251 RYGGRDRYDDRGSRDYDRGY------DSRIGSGRRAFGSGYRRDDDYRGGG 295

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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 181 GGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           GGY+  G      G ++ G   Y  S G GGY+   G     G G ++ G
Sbjct: 109 GGYSGGGGSYGGGGGRREGGGGY--SGGGGGYSSRGGGGGSYGGGRREGG 156

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>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +1

Query: 166 YDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYK 321
           YD R GGY          GY    + DY  S  +GGY      D YSG  Y+
Sbjct: 115 YDSRPGGY----------GYGYGRSRDY--SGSQGGY------DRYSGGNYR 148

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>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
           (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH
           box protein 38)
          Length = 1227

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 169 DRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKS 285
           +RRE G   S  E+ D   +KS   DYDR   R   ++S
Sbjct: 138 ERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRS 176

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>Y1836_MYCTU (Q50597) Hypothetical protein Rv1836c/MT1884|
          Length = 677

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 154 SNEGYDRREGGYNKSGAEDY 213
           S+EG+    GGY+ SG+EDY
Sbjct: 48  SSEGHYSAVGGYSASGSEDY 67

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>PSP2_YEAST (P50109) Protein PSP2 (Mitochondrial regulator of splicing 15)|
          Length = 578

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 217 TGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGY 318
           +G+   G +D  R++GRG YN S  +    G G+
Sbjct: 507 SGFLGQGNNDSIRNNGRGNYNSSGMNGGSRGRGF 540

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>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +1

Query: 169 DRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYKKSG 330
           D+  GG    G    D G +  G        G GGYN+S+G  E  G G  + G
Sbjct: 198 DQSGGGGGGYGGGQQDRGGRGRG--------GGGGYNRSSGGYEPRGRGGGRGG 243

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>BUD14_YEAST (P27637) Bud site selection protein BUD14|
          Length = 707

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = +1

Query: 145 NKTSNEGYDRREGGYNKSGAEDYDTGYKKSGTDDYDRSSGRGGYNKSTGDDEYSGAGYK 321
           N T N   D    G   + +ED D     S  DD+DR     G+     D E     Y+
Sbjct: 193 NNTMNPDVDDFSDGLKYAISEDEDEEENYSDDDDFDRKFQDSGFQGEKDDLEEENDDYQ 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,453,121
Number of Sequences: 219361
Number of extensions: 278968
Number of successful extensions: 1327
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result