>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 2   STASSPSPTIFSKQPIPQWGLCLGVYWSSAFAPSWWR---PCSPMHRRRRQWSSAWPSAP 172
           S ++SPSP    K+  P+  + +G  W S    S  R   P  P  RRRR  S A P  P
Sbjct: 524 SRSASPSPRKRQKETSPR--MQMGKRWQSPVTKSSRRRRSPSPPPARRRRSPSPAPPPPP 581

Query: 173 TAP 181
             P
Sbjct: 582 PPP 584

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +2

Query: 110 RPCSPMHRRRRQWSSAWPSAPTAPGRT*KLRLLSQAFRWLSSARTPTASTRPR 268
           R  SP+   RR   S  PS   +PGR  K R L +  R     R  +  TRPR
Sbjct: 365 RSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPR 417

>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +2

Query: 110 RPCSPMHRRRRQWSSAWPSAPTAPGRT*KLRLLSQAFRWLSSARTPTASTRPR 268
           R  SP+   RR   S  PS   +PGR  K R L +  R     R  +  TRPR
Sbjct: 365 RSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPR 417

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +2

Query: 2   STASSPSPTIFSKQPIPQWGLCLGVYWSSAFAPSWWR---PCSPMHRRRRQWSSAWP--- 163
           S ++SPSP    K+  P+  + +G  W S    S  R   P  P  RRRR  S A P   
Sbjct: 526 SRSASPSPRKRQKETSPR--MQMGKRWQSPVTKSGRRRRSPSPPPTRRRRSPSPAPPPRR 583

Query: 164 -SAPTAPGR 187
              PT P R
Sbjct: 584 RRTPTPPPR 592

>SYC_ZYMMO (Q5NR44) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 516

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 WRPCSPMHRRRRQWSSAWPSAPTAPG 184
           WR  SP  +R+ +W S W   P APG
Sbjct: 197 WRRSSPDEKRQMEWISPW--GPGAPG 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,543,214
Number of Sequences: 219361
Number of extensions: 614877
Number of successful extensions: 1663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)