ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet124d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857758.1| Triticum monococcum peroxidase 4 (POX4) mRNA, com... 56 2e-05
2dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 42 0.25
3emb|AL360006.15| Human DNA sequence from clone RP11-528D17 on ch... 40 1.0
4emb|AL356357.22| Human DNA sequence from clone RP4-550F15 on chr... 40 1.0
5gb|AC154760.2| Mus musculus BAC clone RP24-414E6 from chromosome... 38 4.0
6gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Canc... 38 4.0
7emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chr... 38 4.0

>gb|AY857758.1| Triticum monococcum peroxidase 4 (POX4) mRNA, complete cds
          Length = 1281

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 45/50 (90%), Gaps = 3/50 (6%)
 Strand = Plus / Plus

                                                            
Query: 43 agccatggcctctacttcgtccctatcagtcgtgttgctcttgtgcctgg 92
          |||||||||||   ||||||| ||||||| ||||||||||||||||||||
Sbjct: 51 agccatggcct---cttcgtctctatcagccgtgttgctcttgtgcctgg 97



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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 41      gaagccatggcctctacttcg 61
               |||||||||||||||||||||
Sbjct: 2267669 gaagccatggcctctacttcg 2267689



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>emb|AL360006.15| Human DNA sequence from clone RP11-528D17 on chromosome 1, complete
              sequence
          Length = 113420

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     agaaagaagccatggcctct 55
              ||||||||||||||||||||
Sbjct: 111554 agaaagaagccatggcctct 111573



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>emb|AL356357.22| Human DNA sequence from clone RP4-550F15 on chromosome 1 Contains
           the KCNK1 gene for potassium channel subfamily K member
           1 and one CpG island, complete sequence
          Length = 71371

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  agaaagaagccatggcctct 55
           ||||||||||||||||||||
Sbjct: 134 agaaagaagccatggcctct 153



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>gb|AC154760.2| Mus musculus BAC clone RP24-414E6 from chromosome 14, complete sequence
          Length = 163089

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    gtgttgctcttgtgcctgg 92
             |||||||||||||||||||
Sbjct: 79248 gtgttgctcttgtgcctgg 79230



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>gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 177245

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    acgttggctagaaagaagc 45
             |||||||||||||||||||
Sbjct: 25627 acgttggctagaaagaagc 25645



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>emb|AL683894.6| Mouse DNA sequence from clone RP23-109G18 on chromosome 4, complete
              sequence
          Length = 201246

 Score = 38.2 bits (19), Expect = 4.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     tggctagaaagaagccatg 49
              |||||||||||||||||||
Sbjct: 138476 tggctagaaagaagccatg 138494


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 594,947
Number of Sequences: 3902068
Number of extensions: 594947
Number of successful extensions: 37456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37441
Number of HSP's gapped (non-prelim): 15
length of query: 92
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 71
effective length of database: 17,151,101,840
effective search space: 1217728230640
effective search space used: 1217728230640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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