ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet124b07 |
|---|---|
| Clone Library Name | barley_pub |
>SIG12_HUMAN (Q96PQ1) Sialic acid-binding Ig-like lectin 12 precursor| (Siglec-12) (Sialic acid-binding Ig-like lectin-like 1) (Siglec-L1) Length = 595 Score = 31.2 bits (69), Expect = 0.63 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +3 Query: 207 LPWTLDHASGLHPVVLLPGSSCSQIE-VRLTDDYEPPSALCAAHKGDGRXHRLWKNAAA 380 +P DH + L V LPG+ + VRL Y P + +GDG +N +A Sbjct: 330 IPQPQDHGTSLTCQVTLPGAGVTMTRAVRLNISYPPQNLTMTVFQGDGTASTTLRNGSA 388
>SIG12_PANTR (Q95LH0) Sialic acid-binding Ig-like lectin 12 precursor| (Siglec-12) (Sialic acid-binding Ig-like lectin-like 1) (Siglec-L1) Length = 597 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +3 Query: 207 LPWTLDHASGLHPVVLLPGSSCSQIE-VRLTDDYEPPSALCAAHKGDGRXHRLWKNAAA 380 +P DH + L V LPG+ + VRL Y P + +GDG +N +A Sbjct: 332 IPKPQDHGTSLTCQVTLPGAGVTTTRAVRLNISYPPQNLTMTVFQGDGTASTTLRNGSA 390
>SIG13_PANTR (Q64JA4) Sialic acid-binding Ig-like lectin 13 precursor| (Siglec-13) Length = 387 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +3 Query: 192 TVALPLPWTLDHASGLHPVVLLPGSSCSQIE-VRLTDDYEPPSALCAAHKGDGRXHRLWK 368 +V +P DH S L V LPG+ + VRL Y P + +GDG + Sbjct: 194 SVVTLIPQPQDHGSRLTCQVTLPGAGVTTTRTVRLNVSYPPQNLTLTVFQGDGTASTTLR 253 Query: 369 NAAA 380 N ++ Sbjct: 254 NESS 257
>PSAD_SPIOL (P12353) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 212 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 264 SSCSQIEVRLTDDYEPPSALCAAHKGDGRXHRLWKNAAA 380 SS I+ RLT ++ PSA+ A K R H + AAA Sbjct: 16 SSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRAAAAA 54
>Y4IO_RHISN (P55498) Hypothetical protein y4iO| Length = 252 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -3 Query: 280 IWLQELPGSSTTGWRPEAWSRVHGNGK--ATVWLTRK 176 +WL+ PGS+ T W E S G GK A V L RK Sbjct: 193 LWLRHQPGSALTRWFYERISHSGGRGKKVAIVALARK 229
>YMCR_STRLA (P43458) Putative HTH-type transcriptional regulator in mcrB| 3'region Length = 281 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 5/34 (14%) Frame = +2 Query: 173 LLPGQPHRRLAVAVDSRPRLRPPP-----CGAAA 259 L PG RRL VD R RPPP CG AA Sbjct: 145 LWPGAGTRRLTERVDGGGRTRPPPSRIWHCGVAA 178
>LEU3_CORJK (Q4JUQ0) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 338 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +3 Query: 201 LPLPWTLDHASGLHPVVLLPGSS 269 LPL + LDHA L P L PGSS Sbjct: 85 LPLRFKLDHAVNLRPSKLYPGSS 107
>YDEV_ECOLI (P77432) Hypothetical sugar kinase ydeV| Length = 530 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +1 Query: 7 RAAPQEI-LSIHPSLLFVS*HQHHTYRQRTQVTYLSPW 117 RA Q + LS P LL+++ H+ YRQ + +T +S W Sbjct: 137 RATGQTLALSAIPRLLWLAHHRSDIYRQASTITMISDW 174
>HAT1_ASPFU (Q4X0W8) Histone acetyltransferase type B catalytic subunit (EC| 2.3.1.48) Length = 570 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/79 (24%), Positives = 31/79 (39%) Frame = +3 Query: 144 PRLLLLVHSTFFLVSHTVALPLPWTLDHASGLHPVVLLPGSSCSQIEVRLTDDYEPPSAL 323 P+L + F V A+ +P TL V LP + +E + D++PP L Sbjct: 129 PQLHISYDEKFKPVEDIAAVDIPKTLKPWIPEDAFVTLPDYEKAVLEDKAAKDFKPPGKL 188 Query: 324 CAAHKGDGRXHRLWKNAAA 380 + R +W + A Sbjct: 189 VHCYVSRNRNFEIWAGSLA 207
>CBL_HUMAN (P22681) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) (RING finger protein 55) Length = 906 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 179 PGQPHRRLAVAVDSRPRLRPPPCGAAAGQLLQPDRGPP 292 P P R +V +SRP+ RP PC G D+ PP Sbjct: 545 PPPPDRPYSVGAESRPQRRPLPC--TPGDCPSRDKLPP 580
>SFXN5_RAT (Q8CFD0) Sideroflexin-5 (Tricarboxylate carrier BBG-TCC)| Length = 342 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 108 LAMAMATK---LQWLPRLLLLVHSTFFLVSHTVALPLPWTL 221 + M+M K LQ PRLLL VHS L + +ALPL +L Sbjct: 271 IVMSMLEKTALLQARPRLLLPVHSLVCLAAFGLALPLAISL 311
>SFXN5_MOUSE (Q925N0) Sideroflexin-5| Length = 342 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 108 LAMAMATK---LQWLPRLLLLVHSTFFLVSHTVALPLPWTL 221 + M+M K LQ PRLLL VHS L + +ALPL +L Sbjct: 271 IVMSMLEKTALLQARPRLLLPVHSLVCLAAFGLALPLAISL 311
>Y2599_MYCBO (P0A5G6) Hypothetical protein Mb2599c| Length = 314 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +2 Query: 185 QPHRRLAVAVDSRPRLRPPPCGA-AAGQLLQP 277 +PHR L + DS + PPP G +G LQP Sbjct: 82 EPHRTLTITSDSIVDVSPPPPGLYTSGPALQP 113
>Y2569_MYCTU (P0A5G5) Hypothetical protein Rv2569c/MT2645| Length = 314 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +2 Query: 185 QPHRRLAVAVDSRPRLRPPPCGA-AAGQLLQP 277 +PHR L + DS + PPP G +G LQP Sbjct: 82 EPHRTLTITSDSIVDVSPPPPGLYTSGPALQP 113
>HMT3_ARATH (Q8LAX0) Homocysteine S-methyltransferase 3 (EC 2.1.1.10)| (S-methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S-methyltransferase 3) (AtHMT-3) Length = 347 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +3 Query: 3 GSGCTAGDSIHPSILALCQLTPAPYVQATHAGDV 104 G CTA IH I++L Q+T P V ++G+V Sbjct: 248 GINCTAPRYIHALIISLRQMTRKPIVVYPNSGEV 281
>YBFF_ECOLI (P75736) Esterase ybfF (EC 3.1.-.-)| Length = 254 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/50 (30%), Positives = 21/50 (42%) Frame = +3 Query: 240 HPVVLLPGSSCSQIEVRLTDDYEPPSALCAAHKGDGRXHRLWKNAAAPDA 389 HP + +PG + + + DD AH G H W +A PDA Sbjct: 196 HPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVIAGAGH--WVHAEKPDA 243
>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) Length = 913 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 179 PGQPHRRLAVAVDSRPRLRPPPCGAAAGQLLQPDRGPP 292 P P R +V ++RP+ RP PC G D+ PP Sbjct: 543 PPPPDRPYSVGAETRPQRRPLPC--TPGDCPSRDKLPP 578
>RBL_PINPS (P81080) Ribulose bisphosphate carboxylase large chain (EC| 4.1.1.39) (RuBisCO large subunit) (Water stress-responsive protein 1/2/14) (Fragments) Length = 48 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 42 ILALCQLTPAPYVQATHAGDVSLAMAMATKLQWLPRL 152 ILA ++TP P V AG + + L+W P L Sbjct: 4 ILAAFRVTPQPGVPPEEAGAADVTLGFVDLLRWSPEL 40
>YHU0_YEAST (P38842) Uncharacterized protein YHR140W| Length = 239 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 102 VSLAMAMATKLQWLPRLLLLVHSTFFLVSHTVALPLPWTLDHASGLHPVVLL 257 VSL + + P L V+ V T P P T+D A L+P++ L Sbjct: 93 VSLVLESIVATVYWPLRLFFVNLIMHGVESTAKTPFPMTVDMAIHLYPILYL 144
>KLF15_HUMAN (Q9UIH9) Krueppel-like factor 15 (Kidney-enriched kruppel-like| factor) Length = 416 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = +2 Query: 176 LPGQPHR-RLAVAVDSRPRLRPPPCGAAAGQLLQPDRGP 289 L PH+ L R R PPP GA+AG P GP Sbjct: 173 LSAGPHKSHLHPGSSGRERCSPPPGGASAGGAQGPGGGP 211
>PARC_MOUSE (Q80TT8) p53-associated parkin-like cytoplasmic protein| Length = 1865 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -2 Query: 104 YVTCVRCLYVWCWC*LTKSKDGWMDRISCGA 12 ++TC RC + +CW L K D +C A Sbjct: 1590 HMTCARCNHGFCWRCLKSWKPSHKDYYNCSA 1620
>MEOX2_XENLA (P39021) Homeobox protein MOX-2| Length = 298 Score = 23.5 bits (49), Expect(2) = 9.2 Identities = 9/23 (39%), Positives = 11/23 (47%) Frame = +2 Query: 224 PRLRPPPCGAAAGQLLQPDRGPP 292 P++ PP LQ D GPP Sbjct: 91 PQMSSPPASTRHSLCLQQDSGPP 113 Score = 22.3 bits (46), Expect(2) = 9.2 Identities = 8/22 (36%), Positives = 12/22 (54%) Frame = +1 Query: 64 HQHHTYRQRTQVTYLSPWPWPR 129 H HH ++Q+ T S W P+ Sbjct: 71 HHHHHHQQQQHQTLQSNWHIPQ 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,120,672 Number of Sequences: 219361 Number of extensions: 935065 Number of successful extensions: 3075 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3074 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
