>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
 Frame = -1

Query: 281 APKKPRGR------LHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSP 120
           AP+  RGR      +H     P   R SP   RD     G     GG GK    SP  + 
Sbjct: 226 APRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEE--RGGGGKPPLGSPRATD 283

Query: 119 EKKQTGAGQFGRPNKRL 69
             +  GAG   RP +R+
Sbjct: 284 GNRDPGAGVPARPGRRM 300

>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D) (CP4)
          Length = 374

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -1

Query: 269 PRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQF 90
           PRG +     N     P P+  R L+ P G   ++G AGK         P  KQ   G  
Sbjct: 79  PRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE-------GPSGKQGNIGPQ 131

Query: 89  GRPNKR 72
           G+P  +
Sbjct: 132 GKPGPK 137

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 293  EEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGA 156
            ++ G PK  + R H H  + HH  P+P+  R     A  RP TG A
Sbjct: 2101 QDRGRPKDRKHRPHHHHHHHHHHPPAPDRDR----YAQERPDTGRA 2142

>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 293  EEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGA 156
            ++ G PK  + R H H  + HH  P+P+  R     A  RP TG A
Sbjct: 2149 QDRGRPKDRKHRPHHHHHHHHHHPPAPDRER----YAQERPDTGRA 2190

>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 293  EEAGAPKKPRGRLHRHKRNPHHTRPSPEVPR 201
            +E G PK  + R H H  + HH  P P+  R
Sbjct: 2198 QERGRPKDRKHRQHHHHHHHHHHPPPPDKDR 2228

>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = -1

Query: 287 AGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQ 108
           +GAP  P G+    ++ P    P P  P    S AG  P TG         P  + + + 
Sbjct: 306 SGAP--PSGQ---QRQGPPQKPPGPAGPTRQASQAGPMPRTG---------PPTTQQPRP 351

Query: 107 TGAGQFGRPNKRLVVEGNSQ 48
           +G G  GRP K  + +  SQ
Sbjct: 352 SGPGPAGRPAKPQLAQKPSQ 371

>DBF4_XENTR (Q28FY7) Protein DBF4 homolog|
          Length = 663

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 149 VSYSSPLLSPEKKQ-TGAGQFGRPNKRLVVEGNSQRKEKKNL 27
           + Y   + SPE  Q TG       N+RL  EGNS +K +K+L
Sbjct: 76  LKYVCSVPSPEPAQNTGESSTSPGNRRLPQEGNSSKKNEKSL 117

>CJ012_HUMAN (Q8N655) Protein C10orf12|
          Length = 1247

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -1

Query: 278  PKKPRGRL---HRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQ 108
            PKK  G+     R ++   + RPS  +  + L+   ++    GAG+ S S P  +  +KQ
Sbjct: 1150 PKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQK---GAGESS-SRPQKATNRKQ 1205

Query: 107  TGAGQFGRPNKRLVVEGNSQRKEK 36
            +      RP+ +      +QRK K
Sbjct: 1206 SSGKTRARPSTKTPESSAAQRKRK 1229

>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from transposon gypsy|
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 1035

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 143 YSSPLLSPEKKQTGAGQFGRPNKRLVVE 60
           Y+SP    +KK T A  FG PNKRLV++
Sbjct: 217 YNSPTWVVDKKGTDA--FGNPNKRLVID 242

>ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)|
          Length = 723

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 284 GAPKKP-RGRLHRHKRNPHHTRPSPEVPRDLLSPA 183
           G P KP R    RH+R+P H R + +VPR  L+P+
Sbjct: 631 GTPGKPKRSESPRHQRSPRHQR-NLQVPRTPLTPS 664

>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -1

Query: 251 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKR 72
           + ++ P    P P  P    S AG  P TG         P  + + + +G G  GRP K 
Sbjct: 585 QQRQGPPQKPPGPAGPTRQASQAGPMPRTG---------PPTTQQPRPSGPGPAGRPTKP 635

Query: 71  LVVEGNSQ 48
            + +  SQ
Sbjct: 636 QLAQKPSQ 643

>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril|
           interface-located protein 5) (Elastin microfibril
           interfacer 5)
          Length = 766

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = -1

Query: 221 PSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKRLVVEGNSQR 45
           P P++P   L P  R P        SYS    SP  ++ G G FG   +RL  EG+ QR
Sbjct: 145 PEPQIPSGQLDPGPRPP--------SYSRAAPSPHGRK-GPGLFGERLERL--EGDVQR 192

>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = -1

Query: 287 AGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQ 108
           +GAP  P G+    ++ P    P P  P    S AG  P TG         P  + + + 
Sbjct: 578 SGAP--PGGQ---QRQGPPQKPPGPAGPTRQASQAGPGPRTG---------PPTTQQPRP 623

Query: 107 TGAGQFGRPNKRLVVEGNSQ 48
           +G G  GRP K  + +  SQ
Sbjct: 624 SGPGPAGRPAKPQLAQKPSQ 643

>NEURL_MOUSE (Q923S6) Neuralized-like protein 1 (m-neuralized 1) (m-neu1)|
          Length = 574

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 197 LLSPAGRRPLTGGAGKVSYSSPLLSPEKKQT-GAGQF 90
           LLS  G  PL G AG  + +SP+  PE   T G GQ+
Sbjct: 481 LLSTCGSGPLGGSAGGTAPNSPVSLPESPVTPGLGQW 517

>RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 341

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 251 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGG 159
           +  R P   +P   VP+D++ PAG  PL  G
Sbjct: 104 QQNRQPAPAKPGAVVPKDVVIPAGPTPLAPG 134

>RLA0_PYRHO (O74109) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 342

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 251 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGG 159
           +  R P   +P   VP+D++ PAG  PL  G
Sbjct: 104 QQNRQPAPAKPGAVVPKDVVVPAGPTPLAPG 134

>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
 Frame = -1

Query: 284 GAPKKPRGRLHRHKRNPHHTR-------PSPEVPRDLLSPAGRRPLTGGA 156
           G   KP GR  R   NP  +        P P  PR   SP+   P  GGA
Sbjct: 165 GPAPKPGGRPPRVGNNPFSSAQSVARPIPRPPAPRPSASPSSMSPRPGGA 214

>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)|
          Length = 3530

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
 Frame = -1

Query: 278 PKKPRGRLHRHK---RNPHHTRP---------------SPEVPRDLLSPAGRRPLTGGAG 153
           P  P G L RH      P H  P               SPEVP DLL+  G RP   G+ 
Sbjct: 690 PASPYGSLRRHPPPWAAPAHVPPAPQASGWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSR 749

Query: 152 K--VSYSSPLLSPEKKQTGA 99
           +   ++  P  SP   +  A
Sbjct: 750 RRGAAFGFPGASPRASRRRA 769

>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase|
           1) (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -1

Query: 272 KPRGRLHRHKRNPHHTRPSPE-VPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAG 96
           K   + +RH+R+ H TR SPE V R  +    R  +              S + KQT   
Sbjct: 389 KSEKKENRHERSRHTTRRSPEHVTRHFVKEKNRHKVDEVGN---------SEDMKQTKRD 439

Query: 95  QFGRPNKRLVVEGNSQR 45
           + GR +++  VE N ++
Sbjct: 440 RRGRADEKEKVEVNGEK 456

>ILF3_MOUSE (Q9Z1X4) Interleukin enhancer-binding factor 3|
          Length = 898

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 185 AGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQ-----FGRPNKRLVVEGNSQ 48
           AG++PL GG  K SYSS   S + +Q    Q     +G P  +    G+ Q
Sbjct: 732 AGKKPLHGGQQKASYSSGYQSHQGQQQPYNQSQYSSYGTPQGKQKGYGHGQ 782

>SERI1_BOMMO (P07856) Sericin 1 precursor (Silk gum protein)|
          Length = 1186

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = -2

Query: 211 RSREISSALRGGDRSQEEQARLATPLLXXXXXXSKPERDNSAGRTRGWWWKGTHKEKK 38
           +S E S++     RS +E A  ++            E D   G   GWWW   +K ++
Sbjct: 459 QSDEKSASQSSSSRSSQESASYSSSSSSSTLSEDSSEVDIDLGNL-GWWWNSDNKVQR 515

>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -1

Query: 251 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKR 72
           + ++ P    P P  P    S AG  P TG         P  + + + +G G  GRP K 
Sbjct: 583 QQRQGPPQKPPGPAGPIRQASQAGPGPRTG---------PPTTQQPRPSGPGPAGRPTKP 633

Query: 71  LVVEGNSQ 48
            + +  SQ
Sbjct: 634 QLAQKPSQ 641

>KALM_HUMAN (P23352) Anosmin-1 precursor (Kallmann syndrome protein) (Adhesion|
           molecule-like X-linked)
          Length = 680

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 278 PKKPRGRLHRHKRNPHHTRPSPE 210
           P     R H   R+PHH +PSPE
Sbjct: 656 PPSSAHRSHLKHRHPHHYKPSPE 678

>JAML1_HUMAN (Q86YT9) Junctional adhesion molecule-like precursor (Dendritic|
           cell-specific protein CREA7-1) (Adhesion molecule
           interacting with CXADR antigen 1)
          Length = 394

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 218 SPEVPRDLLSPAGRRPLTGGAGKV 147
           SPE PR L++PA  RPL  G  ++
Sbjct: 252 SPEEPRTLVTPAALRPLVLGGNQL 275

>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -1

Query: 221 PSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSP 120
           P P  P++L SP G RP T    K S SS L  P
Sbjct: 281 PLPSKPQELASPPGGRP-TPAPRKASESSALTPP 313

>NADE_STRA5 (Q8E1Q7) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)|
          Length = 273

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 97  DNSAGRTRGWWWKGTHKEKKRKTCLD 20
           D S G    WW+KG HK     T  D
Sbjct: 244 DKSRGIIENWWYKGQHKRHLPITIFD 269

>NADE_STRA3 (Q8E771) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)|
          Length = 273

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 97  DNSAGRTRGWWWKGTHKEKKRKTCLD 20
           D S G    WW+KG HK     T  D
Sbjct: 244 DKSRGIIENWWYKGQHKRHLPITIFD 269

>TF2B_SCHPO (O13749) Transcription initiation factor IIB (General transcription|
           factor TFIIB)
          Length = 340

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 150 LACSSCERSPPRRAEEISR-DLGTGACMMGISLMPMKTPTRLLWST 284
           + CS C   PP   EE S  D   G+C  G+ L      TR  W T
Sbjct: 18  MICSECREDPPNLVEEFSSGDTVCGSC--GLVLGDRIIDTRSEWRT 61

>ERP_MYCTU (P0A5P4) Exported repetitive protein precursor (Cell surface|
           protein pirG) (EXP53)
          Length = 284

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 239 NPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 129
           NP  T P+   P  L SP G  P  GGA ++  ++P+
Sbjct: 148 NPALTSPTGATP-GLTSPTGLDPALGGANEIPITTPV 183

>ERP_MYCBO (P0A5P5) Exported repetitive protein precursor (Cell surface|
           protein pirG) (EXP53)
          Length = 284

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 239 NPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 129
           NP  T P+   P  L SP G  P  GGA ++  ++P+
Sbjct: 148 NPALTSPTGATP-GLTSPTGLDPALGGANEIPITTPV 183


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,450,873
Number of Sequences: 219361
Number of extensions: 898649
Number of successful extensions: 3375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)