| Clone Name | baet123d12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474386.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 545 bits (275), Expect = e-152 Identities = 398/439 (90%) Strand = Plus / Plus Query: 1 tagccacacctgtcctgaaggttgctgcaaaggtcattggtgaagttcaggcactgatag 60 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 1079 tagcaacacctgtcctgaaggttgctgcgaaggtcattggtgaagttcaggcactaatta 1138 Query: 61 ttttcccagttgtgccgtactttatcctcgctatcttttatatgttctggttttctgcca 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1139 ttttcccagttgtgccatactttatcctcgctatcttttatatgttctggttttctgcca 1198 Query: 121 cactccacctcttcagctctggccaggttgtccgaaatgactgcagtacagattgttgtt 180 ||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||||| | Sbjct: 1199 cactccatctcttcagctctggtcaagttctccgaaatgactgcaatacagattgttgct 1258 Query: 181 cctatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1259 catatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 1318 Query: 241 acacccctcatattggcattgcaattcttttccacttatttggctgctactgggctactc 300 |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || | Sbjct: 1319 acacccctcatattggtattgccattcttttccacttatttggctgttactgggcaaccc 1378 Query: 301 aattttttatggcatgctctgcaactgtggttgccggatcagttgcttcctactactggg 360 |||| ||||| || |||||| |||| ||| |||| |||||||||||||| ||||| |||| Sbjct: 1379 aattctttattgcttgctcttcaaccgtgattgctggatcagttgcttcatactattggg 1438 Query: 361 cccgtggtgaaatatctcatgatataccgtttttcagtgttgtctcttcgctcaagcggc 420 | |||||||||||||||||||| ||||| ||| | | ||||| ||||| | |||||| Sbjct: 1439 cacgtggtgaaatatctcatgacataccatttgttacagttgtttcttcaatgaagcggt 1498 Query: 421 tgatgcgttacaaccttgg 439 || ||||||||| |||||| Sbjct: 1499 tgttgcgttacagccttgg 1517
>dbj|AK071744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107N13, full insert sequence Length = 2520 Score = 545 bits (275), Expect = e-152 Identities = 398/439 (90%) Strand = Plus / Plus Query: 1 tagccacacctgtcctgaaggttgctgcaaaggtcattggtgaagttcaggcactgatag 60 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 1208 tagcaacacctgtcctgaaggttgctgcgaaggtcattggtgaagttcaggcactaatta 1267 Query: 61 ttttcccagttgtgccgtactttatcctcgctatcttttatatgttctggttttctgcca 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1268 ttttcccagttgtgccatactttatcctcgctatcttttatatgttctggttttctgcca 1327 Query: 121 cactccacctcttcagctctggccaggttgtccgaaatgactgcagtacagattgttgtt 180 ||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||||| | Sbjct: 1328 cactccatctcttcagctctggtcaagttctccgaaatgactgcaatacagattgttgct 1387 Query: 181 cctatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1388 catatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 1447 Query: 241 acacccctcatattggcattgcaattcttttccacttatttggctgctactgggctactc 300 |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || | Sbjct: 1448 acacccctcatattggtattgccattcttttccacttatttggctgttactgggcaaccc 1507 Query: 301 aattttttatggcatgctctgcaactgtggttgccggatcagttgcttcctactactggg 360 |||| ||||| || |||||| |||| ||| |||| |||||||||||||| ||||| |||| Sbjct: 1508 aattctttattgcttgctcttcaaccgtgattgctggatcagttgcttcatactattggg 1567 Query: 361 cccgtggtgaaatatctcatgatataccgtttttcagtgttgtctcttcgctcaagcggc 420 | |||||||||||||||||||| ||||| ||| | | ||||| ||||| | |||||| Sbjct: 1568 cacgtggtgaaatatctcatgacataccatttgttacagttgtttcttcaatgaagcggt 1627 Query: 421 tgatgcgttacaaccttgg 439 || ||||||||| |||||| Sbjct: 1628 tgttgcgttacagccttgg 1646
>ref|XM_474387.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 529 bits (267), Expect = e-147 Identities = 396/439 (90%) Strand = Plus / Plus Query: 1 tagccacacctgtcctgaaggttgctgcaaaggtcattggtgaagttcaggcactgatag 60 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 1079 tagcaacacctgtcctgaaggttgctgcgaaggtcattggtgaagttcaggcactaatta 1138 Query: 61 ttttcccagttgtgccgtactttatcctcgctatcttttatatgttctggttttctgcca 120 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1139 ttttcccagttgtgccatactttatcttcgctatcttttatatgttctggttttctgcca 1198 Query: 121 cactccacctcttcagctctggccaggttgtccgaaatgactgcagtacagattgttgtt 180 ||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||||| | Sbjct: 1199 cactccatctcttcagctctggtcaagttctccgaaatgactgcaatacagattgttgct 1258 Query: 181 cctatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1259 catatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 1318 Query: 241 acacccctcatattggcattgcaattcttttccacttatttggctgctactgggctactc 300 |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || | Sbjct: 1319 acacccctcatattggtattgccattcttttccacttatttggctgttactgggcaaccc 1378 Query: 301 aattttttatggcatgctctgcaactgtggttgccggatcagttgcttcctactactggg 360 |||| ||||| || |||||| |||| ||| |||| |||||||||||||| ||||| |||| Sbjct: 1379 aattctttattgcgtgctcttcaaccgtgattgctggatcagttgcttcatactattggg 1438 Query: 361 cccgtggtgaaatatctcatgatataccgtttttcagtgttgtctcttcgctcaagcggc 420 | |||||||||||||| ||||| ||||| ||| | | ||||| ||||| | |||||| Sbjct: 1439 cacgtggtgaaatatcccatgacataccatttgttacagttgtttcttcattgaagcggt 1498 Query: 421 tgatgcgttacaaccttgg 439 || ||||||||| |||||| Sbjct: 1499 tgttgcgttacagccttgg 1517
>dbj|AK105243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E05, full insert sequence Length = 2433 Score = 529 bits (267), Expect = e-147 Identities = 396/439 (90%) Strand = Plus / Plus Query: 1 tagccacacctgtcctgaaggttgctgcaaaggtcattggtgaagttcaggcactgatag 60 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 1152 tagcaacacctgtcctgaaggttgctgcgaaggtcattggtgaagttcaggcactaatta 1211 Query: 61 ttttcccagttgtgccgtactttatcctcgctatcttttatatgttctggttttctgcca 120 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1212 ttttcccagttgtgccatactttatcttcgctatcttttatatgttctggttttctgcca 1271 Query: 121 cactccacctcttcagctctggccaggttgtccgaaatgactgcagtacagattgttgtt 180 ||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||||| | Sbjct: 1272 cactccatctcttcagctctggtcaagttctccgaaatgactgcaatacagattgttgct 1331 Query: 181 cctatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 catatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccatt 1391 Query: 241 acacccctcatattggcattgcaattcttttccacttatttggctgctactgggctactc 300 |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || | Sbjct: 1392 acacccctcatattggtattgccattcttttccacttatttggctgttactgggcaaccc 1451 Query: 301 aattttttatggcatgctctgcaactgtggttgccggatcagttgcttcctactactggg 360 |||| ||||| || |||||| |||| ||| |||| |||||||||||||| ||||| |||| Sbjct: 1452 aattctttattgcgtgctcttcaaccgtgattgctggatcagttgcttcatactattggg 1511 Query: 361 cccgtggtgaaatatctcatgatataccgtttttcagtgttgtctcttcgctcaagcggc 420 | |||||||||||||| ||||| ||||| ||| | | ||||| ||||| | |||||| Sbjct: 1512 cacgtggtgaaatatcccatgacataccatttgttacagttgtttcttcattgaagcggt 1571 Query: 421 tgatgcgttacaaccttgg 439 || ||||||||| |||||| Sbjct: 1572 tgttgcgttacagccttgg 1590
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence Length = 148023 Score = 498 bits (251), Expect = e-138 Identities = 332/359 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 |||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 23414 aggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 23355 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 23354 actttatcctcgctatcttttatatgttctggttttctgccacactccatctcttcagct 23295 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 23294 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 23235 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 23234 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggta 23175 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 23174 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcttgct 23115 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatct 377 || |||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 23114 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatct 23056 Score = 488 bits (246), Expect = e-135 Identities = 330/358 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 |||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 34729 aggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 34670 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 34669 actttatcttcgctatcttttatatgttctggttttctgccacactccatctcttcagct 34610 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 34609 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 34550 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 34549 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggta 34490 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 34489 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcgtgct 34430 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatc 376 || |||| ||| |||| |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 34429 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatc 34372
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 498 bits (251), Expect = e-138 Identities = 332/359 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 |||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 122860 aggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 122801 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 122800 actttatcctcgctatcttttatatgttctggttttctgccacactccatctcttcagct 122741 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 122740 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 122681 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 122680 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggta 122621 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 122620 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcttgct 122561 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatct 377 || |||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 122560 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatct 122502
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 498 bits (251), Expect = e-138 Identities = 332/359 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 |||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 34817301 aggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 34817242 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 34817241 actttatcctcgctatcttttatatgttctggttttctgccacactccatctcttcagct 34817182 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 34817181 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 34817122 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 34817121 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggta 34817062 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 34817061 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcttgct 34817002 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatct 377 || |||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 34817001 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatct 34816943 Score = 488 bits (246), Expect = e-135 Identities = 330/358 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 |||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 34828616 aggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 34828557 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 34828556 actttatcttcgctatcttttatatgttctggttttctgccacactccatctcttcagct 34828497 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 34828496 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 34828437 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 34828436 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggta 34828377 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 34828376 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcgtgct 34828317 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatc 376 || |||| ||| |||| |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 34828316 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatc 34828259
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 496 bits (250), Expect = e-137 Identities = 331/358 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 8266 aggttgctgcaaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 8207 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 8206 actttatcctcgctatcttttatatgttctggttttctgccacactccatctcttcagct 8147 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 8146 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 8087 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 8086 gcaaagtaaactgtgacaactgttgtgggtacagcatccattacacccctcatattggta 8027 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 8026 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcgtgct 7967 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatc 376 || |||| ||| |||| |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 7966 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatc 7909
>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete sequence Length = 110682 Score = 496 bits (250), Expect = e-137 Identities = 331/358 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 82342 aggttgctgcaaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 82283 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 82282 actttatcctcgctatcttttatatgttctggttttctgccacactccatctcttcagct 82223 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 82222 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 82163 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 82162 gcaaagtaaactgtgacaactgttgtgggtacagcatccattacacccctcatattggta 82103 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 82102 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcgtgct 82043 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatc 376 || |||| ||| |||| |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 82042 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatc 81985 Score = 490 bits (247), Expect = e-135 Identities = 331/359 (92%) Strand = Plus / Minus Query: 19 aggttgctgcaaaggtcattggtgaagttcaggcactgatagttttcccagttgtgccgt 78 |||||||||| |||||||||||||||||||||||||| || |||||||||||||||| | Sbjct: 70896 aggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccat 70837 Query: 79 actttatcctcgctatcttttatatgttctggttttctgccacactccacctcttcagct 138 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 70836 actttatcctcgctatcttttatatgttctggttttctgccacactccatctcttcagct 70777 Query: 139 ctggccaggttgtccgaaatgactgcagtacagattgttgttcctatgatctgaagttgg 198 |||| || ||| ||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 70776 ctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgg 70717 Query: 199 gcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggca 258 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 70716 gcaaagtaaactgtgacaactgttgtgggtacagcatccattacacccctcatattggta 70657 Query: 259 ttgcaattcttttccacttatttggctgctactgggctactcaattttttatggcatgct 318 |||| ||||||||||||||||||||||| |||||||| || ||||| ||||| || |||| Sbjct: 70656 ttgccattcttttccacttatttggctgttactgggcaacccaattctttattgcttgct 70597 Query: 319 ctgcaactgtggttgccggatcagttgcttcctactactgggcccgtggtgaaatatct 377 || |||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 70596 cttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatct 70538
>gb|AY108201.1| Zea mays PCO137413 mRNA sequence Length = 1039 Score = 490 bits (247), Expect = e-135 Identities = 391/439 (89%) Strand = Plus / Plus Query: 6 acacctgtcctgaaggttgctgcaaaggtcattggtgaagttcaggcactgatagttttc 65 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 4 acacctgtcttaaaggttgctgcaaaggtcattggtgaagttcaggcactgatagctttt 63 Query: 66 ccagttgtgccgtactttatcctcgctatcttttatatgttctggttttctgccacactc 125 ||| || |||||| | | ||||| ||||||| |||||||||||||||||||| |||||| Sbjct: 64 ccacttttgccgtgcctgatcctttctatcttgtatatgttctggttttctgctacactc 123 Query: 126 cacctcttcagctctggccaggttgtccgaaatgactgcagtacagattgttgttcctat 185 || |||||||||||||| || |||||||||||||| |||| ||| ||||||||||| ||| Sbjct: 124 catctcttcagctctggtcaagttgtccgaaatgattgcaatactgattgttgttcatat 183 Query: 186 gatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccattacacc 245 ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 184 gatctgaagctgggaaaagtaaattgtgacaactgctgtgggtacagcatccattacacc 243 Query: 246 cctcatattggcattgcaattcttttccacttatttggctgctactgggctactcaattt 305 |||||||| ||||||| ||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 244 cctcatatcagcattgccattctatttcacttatttggttgctactgggcgactcaattc 303 Query: 306 tttatggcatgctctgcaactgtggttgccggatcagttgcttcctactactgggcccgt 365 || | ||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 304 attctcgcatgctcttcaactgtggttgcgggatcagttgcttcatactactgggcgcgt 363 Query: 366 ggtgaaatatctcatgatataccgtttttcagtgttgtctcttcgctcaagcggctgatg 425 ||||||||||| ||||||||||| ||| ||| ||| |||||||| || ||||| |||||| Sbjct: 364 ggtgaaatatcacatgatataccatttctcactgtagtctcttcactgaagcgactgatg 423 Query: 426 cgttacaaccttggatctg 444 || |||| ||||||||||| Sbjct: 424 cgctacagccttggatctg 442
>emb|BX324133.12| Zebrafish DNA sequence from clone CH211-209H1 in linkage group 10, complete sequence Length = 127130 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 171 gattgttgttcctatgatctga 192 |||||||||||||||||||||| Sbjct: 72277 gattgttgttcctatgatctga 72298
>emb|Z93403.1|HS308O1 Human DNA sequence from clone RP1-308O1 on chromosome Xp11.3-11.4 Contains part of a novel gene, complete sequence Length = 166715 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 268 ttttccacttatttggctgctactgggct 296 ||||||||| |||||||||||| |||||| Sbjct: 11891 ttttccactgatttggctgctattgggct 11863
>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109471 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 caattcttttccacttatttg 282 ||||||||||||||||||||| Sbjct: 41912 caattcttttccacttatttg 41932
>gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, complete sequence Length = 203049 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 agccacacctgtcctgaagg 21 |||||||||||||||||||| Sbjct: 160856 agccacacctgtcctgaagg 160837
>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence Length = 206108 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 agccacacctgtcctgaagg 21 |||||||||||||||||||| Sbjct: 25872 agccacacctgtcctgaagg 25853
>gb|AC136004.10| Mus musculus chromosome 7, clone RP23-235M8, complete sequence Length = 185174 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tgggctactcaattttttat 310 |||||||||||||||||||| Sbjct: 157384 tgggctactcaattttttat 157365
>gb|AC117723.8| Mus musculus chromosome 1, clone RP24-232C21, complete sequence Length = 213190 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctccacctcttcagctctgg 142 |||||||||||||||||||| Sbjct: 105769 ctccacctcttcagctctgg 105788
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 95 cttttatatgttctggttttctgccaca 122 ||||||||||||||||| || ||||||| Sbjct: 4059143 cttttatatgttctggtgttgtgccaca 4059170
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 95 cttttatatgttctggttttctgccaca 122 ||||||||||||||||| || ||||||| Sbjct: 4071308 cttttatatgttctggtgttgtgccaca 4071335
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 95 cttttatatgttctggttttctgccaca 122 ||||||||||||||||| || ||||||| Sbjct: 4071681 cttttatatgttctggtgttgtgccaca 4071708
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tcgctcaagcggctgatgcg 427 |||||||||||||||||||| Sbjct: 241624 tcgctcaagcggctgatgcg 241643
>gb|U40941.2| Caenorhabditis elegans cosmid F35C8, complete sequence Length = 30092 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 ttgcttcctactactgggcccgtg 366 ||||||||||||||||||| |||| Sbjct: 8457 ttgcttcctactactgggctcgtg 8434
>gb|AC123921.3| Mus musculus BAC clone RP24-180J14 from chromosome 8, complete sequence Length = 183936 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cctcttcagctctggccagg 147 |||||||||||||||||||| Sbjct: 164146 cctcttcagctctggccagg 164165
>emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on chromosome 1 Contains part of gene KIAA1365 and the PIN1L gene for protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1-like, complete sequence Length = 153750 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ccgtttttcagtgttgtctc 406 |||||||||||||||||||| Sbjct: 39151 ccgtttttcagtgttgtctc 39132
>emb|AL445195.4| Human DNA sequence from clone RP11-427O13 on chromosome 13 Contains 2 NADH dehydrogenase pseudogenes and a novel gene, complete sequence Length = 172064 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ctatgatctgaagttgggca 201 |||||||||||||||||||| Sbjct: 102710 ctatgatctgaagttgggca 102729
>emb|AL158160.8| Human DNA sequence from clone RP11-165O3 on chromosome 10 Contains the gene for a novel protein and a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1)(B23,NPM,NUMATRIN) pseudogene, complete sequence Length = 113036 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ggcattgcaattcttttcca 274 |||||||||||||||||||| Sbjct: 93417 ggcattgcaattcttttcca 93398
>ref|NM_001020482.1| Danio rerio carboxypeptidase A1 (pancreatic) (cpa1), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atgttctggttttctgccac 121 |||||||||||||||||||| Sbjct: 440 atgttctggttttctgccac 421
>gb|BC095726.1| Danio rerio carboxypeptidase A1 (pancreatic), mRNA (cDNA clone MGC:112280 IMAGE:7248185), complete cds Length = 1461 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atgttctggttttctgccac 121 |||||||||||||||||||| Sbjct: 440 atgttctggttttctgccac 421
>gb|BC076061.1| Danio rerio carboxypeptidase A1 (pancreatic), mRNA (cDNA clone IMAGE:7049277), partial cds Length = 1456 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 atgttctggttttctgccac 121 |||||||||||||||||||| Sbjct: 420 atgttctggttttctgccac 401
>gb|AC104041.5| Homo sapiens chromosome 15, clone CTD-2034I4, complete sequence Length = 188519 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cattgcaattcttttccact 276 |||||||||||||||||||| Sbjct: 177702 cattgcaattcttttccact 177721
>gb|AC023034.9| Homo sapiens, clone RP11-499F3, complete sequence Length = 189732 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 cattgcaattcttttccact 276 |||||||||||||||||||| Sbjct: 44779 cattgcaattcttttccact 44798
>gb|AC154817.2| Mus musculus BAC clone RP23-72G6 from chromosome 13, complete sequence Length = 143739 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 cagattgttgttcctatgatctga 192 ||||||||| |||||||||||||| Sbjct: 58372 cagattgtttttcctatgatctga 58349
>gb|AC157279.2| Mus musculus BAC clone RP23-149H21 from chromosome 13, complete sequence Length = 187493 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 tttatatgttctggttttct 116 |||||||||||||||||||| Sbjct: 36876 tttatatgttctggttttct 36895
>ref|NM_171685.4| Caenorhabditis elegans F35C8.7a (F35C8.7) mRNA, complete cds Length = 2438 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 ttgcttcctactactgggcccgtg 366 ||||||||||||||||||| |||| Sbjct: 1729 ttgcttcctactactgggctcgtg 1752
>ref|NM_171686.3| Caenorhabditis elegans F35C8.7b (F35C8.7) mRNA, complete cds Length = 2490 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 ttgcttcctactactgggcccgtg 366 ||||||||||||||||||| |||| Sbjct: 1522 ttgcttcctactactgggctcgtg 1545
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aagttgggcaaagtaaactg 211 |||||||||||||||||||| Sbjct: 30834368 aagttgggcaaagtaaactg 30834349
>gb|AC099699.16| Mus musculus chromosome 7, clone RP23-32A8, complete sequence Length = 195263 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tgggctactcaattttttat 310 |||||||||||||||||||| Sbjct: 10959 tgggctactcaattttttat 10940
>gb|AE000783.1| Borrelia burgdorferi B31, complete genome Length = 910724 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 atcttttatatgttctggtt 112 |||||||||||||||||||| Sbjct: 357078 atcttttatatgttctggtt 357059
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684F11 Length = 147731 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aagttgggcaaagtaaactg 211 |||||||||||||||||||| Sbjct: 17945 aagttgggcaaagtaaactg 17926
>emb|BX001056.6| Zebrafish DNA sequence from clone CH211-15P9 in linkage group 11, complete sequence Length = 150229 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 aattcttttccacttatttg 282 |||||||||||||||||||| Sbjct: 29436 aattcttttccacttatttg 29417
>gb|AC103352.8| Mus musculus chromosome 8, clone RP23-418G1, complete sequence Length = 207330 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cctcttcagctctggccagg 147 |||||||||||||||||||| Sbjct: 34932 cctcttcagctctggccagg 34951
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 95 cttttatatgttctggttttctgccaca 122 ||||||||||||||||| || ||||||| Sbjct: 4071181 cttttatatgttctggtgttgtgccaca 4071208
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 ctcttcgctcaagcggctgatgcg 427 ||||||| |||||||||||||||| Sbjct: 389533 ctcttcgatcaagcggctgatgcg 389510
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 ctcttcgctcaagcggctgatgcg 427 ||||||| |||||||||||||||| Sbjct: 389531 ctcttcgatcaagcggctgatgcg 389508 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,080,976 Number of Sequences: 3902068 Number of extensions: 4080976 Number of successful extensions: 72926 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72624 Number of HSP's gapped (non-prelim): 302 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)