ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet123d02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY487425.1| Mus musculus p21-activated kinase 5 (Pak7) mRNA, complete cds Length = 2160 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 cacacaggcaagcaagtggcag 41 |||||||||||||||||||||| Sbjct: 1408 cacacaggcaagcaagtggcag 1429
>dbj|AK163530.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230346L11 product:p21 (CDKN1A)-activated kinase 7, full insert sequence Length = 2813 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 cacacaggcaagcaagtggcag 41 |||||||||||||||||||||| Sbjct: 1696 cacacaggcaagcaagtggcag 1717
>dbj|AK032593.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430627N20 product:p21 (CDKN1A)-activated kinase 7, full insert sequence Length = 3937 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 cacacaggcaagcaagtggcag 41 |||||||||||||||||||||| Sbjct: 1861 cacacaggcaagcaagtggcag 1882
>dbj|AK079080.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330159N09 product:p21 (CDKN1A)-activated kinase 7, full insert sequence Length = 4055 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 cacacaggcaagcaagtggcag 41 |||||||||||||||||||||| Sbjct: 1981 cacacaggcaagcaagtggcag 2002
>emb|AL845354.13| Mouse DNA sequence from clone RP23-318L10 on chromosome 2, complete sequence Length = 178468 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 cacacaggcaagcaagtggcag 41 |||||||||||||||||||||| Sbjct: 40166 cacacaggcaagcaagtggcag 40145
>ref|NM_172858.1| Mus musculus p21 (CDKN1A)-activated kinase 7 (Pak7), mRNA Length = 4055 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 cacacaggcaagcaagtggcag 41 |||||||||||||||||||||| Sbjct: 1981 cacacaggcaagcaagtggcag 2002
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 cgtcctgctggcgatcgccgt 111 ||||||||||||||||||||| Sbjct: 283484 cgtcctgctggcgatcgccgt 283464
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 cgctcgtcctcgccgtcctgctgg 101 |||| ||||||||||||||||||| Sbjct: 147049 cgctggtcctcgccgtcctgctgg 147026
>emb|AL731559.8| Human DNA sequence from clone RP11-495F22 on chromosome 10 Contains part of the gene for CamKI-like protein kinase (CKLiK) (LOC221042 LOC283070), complete sequence Length = 196320 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 catccatcagccacttcaca 23 |||||||||||||||||||| Sbjct: 128720 catccatcagccacttcaca 128701
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gtcctcgccgtcctgctggc 102 |||||||||||||||||||| Sbjct: 160301 gtcctcgccgtcctgctggc 160320
>emb|CR858827.1| Pongo pygmaeus mRNA; cDNA DKFZp469O2110 (from clone DKFZp469O2110) Length = 6078 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 catcagccacttcacacagg 27 |||||||||||||||||||| Sbjct: 2096 catcagccacttcacacagg 2115
>emb|CR857771.1| Pongo pygmaeus mRNA; cDNA DKFZp468P139 (from clone DKFZp468P139) Length = 3047 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 catcagccacttcacacagg 27 |||||||||||||||||||| Sbjct: 2039 catcagccacttcacacagg 2058
>gb|AE004922.1| Pseudomonas aeruginosa PAO1, section 483 of 529 of the complete genome Length = 11099 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 cgccgtcctgctggcgatcgccgt 111 ||||| |||||||||||||||||| Sbjct: 2683 cgccgacctgctggcgatcgccgt 2660
>gb|AY166592.1| Leishmania donovani protein disulfide isomerase (PDI) gene, complete cds Length = 402 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 ctcgccgtcctgctggcgatcgcc 109 |||||||||||||||||| ||||| Sbjct: 22 ctcgccgtcctgctggcggtcgcc 45
>ref|XM_230625.3| PREDICTED: Rattus norvegicus p21 (CDKN1A)-activated kinase 7 (predicted) (Pak7_predicted), mRNA Length = 3919 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 cacacaggcaagcaagtggc 39 |||||||||||||||||||| Sbjct: 1855 cacacaggcaagcaagtggc 1874
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 101 gcgatcgccgtcgccaacgccgag 124 ||||||||||||||| |||||||| Sbjct: 1415767 gcgatcgccgtcgccgacgccgag 1415790
>tpe|BN000248.1|FRU000248 TPA: TPA_inf: Fugu rubripes mRNA for desmin-2 Length = 1356 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cagcgcggctcagaggttca 58 |||||||||||||||||||| Sbjct: 1246 cagcgcggctcagaggttca 1265
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgccgagccggcgtccgtcg 137 |||||||||||||||||||| Sbjct: 1632102 cgccgagccggcgtccgtcg 1632083
>ref|XM_531425.1| PREDICTED: Pan troglodytes chromosome 21 open reading frame 108 (LOC473954), mRNA Length = 5429 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 4349 atcagccacttcacacagg 4331
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gccgtcctgctggcgatcg 107 ||||||||||||||||||| Sbjct: 76013 gccgtcctgctggcgatcg 76031
>gb|AC119952.12| Mus musculus chromosome 14, clone RP24-448F1, complete sequence Length = 181695 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 10 tcagccacttcacacaggcaagc 32 |||||||||||||||||| |||| Sbjct: 29226 tcagccacttcacacaggaaagc 29248
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 gctggcgatcgccgtcgcc 115 ||||||||||||||||||| Sbjct: 3252609 gctggcgatcgccgtcgcc 3252591
>gb|AY960753.1| Arabidopsis halleri subsp. gemmifera Zrt- and Irt-related protein 3 (ZIP3) mRNA, partial cds Length = 960 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 atcgccgtcgccaacgccg 122 ||||||||||||||||||| Sbjct: 35 atcgccgtcgccaacgccg 53
>emb|AL954207.1| Pan troglodytes chromosome 22 clone PTB-375M11 map q21.1, complete sequence Length = 132049 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 8904 atcagccacttcacacagg 8922
>gb|AF432264.1| Homo sapiens KIAA0539 protein mRNA, partial cds Length = 728 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 286 atcagccacttcacacagg 268
>gb|AC166551.2| Nectria haematococca clone JGIAYWI-9J5, complete sequence Length = 35081 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 104 atcgccgtcgccaacgccg 122 ||||||||||||||||||| Sbjct: 21013 atcgccgtcgccaacgccg 20995
>gb|AC158913.4| Mus musculus chromosome 5, clone RP24-268J3, complete sequence Length = 152822 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 ggctcagaggttcaagcat 63 ||||||||||||||||||| Sbjct: 86979 ggctcagaggttcaagcat 86961
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 caagcaagtggcagcgcgg 46 ||||||||||||||||||| Sbjct: 4489981 caagcaagtggcagcgcgg 4489963 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 cctgctggcgatcgccgtc 112 ||||||||||||||||||| Sbjct: 3860659 cctgctggcgatcgccgtc 3860641
>emb|Y18862.1|SAMY18862 Streptomyces ambofaciens NRRL2240 sar gene and ORF2, ORF3 and ORF4 Length = 5966 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 cgctcgtcctcgccgtcct 96 ||||||||||||||||||| Sbjct: 1044 cgctcgtcctcgccgtcct 1026
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgtcctgctggcgatcgcc 109 ||||||||||||||||||| Sbjct: 1498967 cgtcctgctggcgatcgcc 1498985
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 97 gctggcgatcgccgtcgccaacg 119 |||||||||||||| |||||||| Sbjct: 211256 gctggcgatcgccggcgccaacg 211234
>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence Length = 178736 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 19 tcacacaggcaagcaagtggcag 41 |||||||||| |||||||||||| Sbjct: 54547 tcacacaggctagcaagtggcag 54569
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 106 cgccgtcgccaacgccgagccgg 128 ||||||||||| ||||||||||| Sbjct: 5173685 cgccgtcgccagcgccgagccgg 5173663
>emb|AL954206.1| Pan troglodytes chromosome 22 clone PTB-052N04 map q21.1, complete sequence Length = 153753 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 129772 atcagccacttcacacagg 129790
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 ctcgtcctcgccgtcctgc 98 ||||||||||||||||||| Sbjct: 4866757 ctcgtcctcgccgtcctgc 4866739
>gb|AF231919.1| Homo sapiens chromosome 21 C21orf108 mRNA, partial cds Length = 10646 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 4103 atcagccacttcacacagg 4085
>ref|XM_688287.1| PREDICTED: Danio rerio similar to alpha(1,3)fucosyltransferase (LOC564968), mRNA Length = 1167 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 cagccacttcacacaggca 29 ||||||||||||||||||| Sbjct: 249 cagccacttcacacaggca 267
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 81 tcgtcctcgccgtcctgctggcg 103 ||||||| ||||||||||||||| Sbjct: 234838 tcgtccttgccgtcctgctggcg 234860
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 tcctgctggcgatcgccgt 111 ||||||||||||||||||| Sbjct: 1400391 tcctgctggcgatcgccgt 1400373
>gb|AC115899.12| Mus musculus chromosome 5, clone RP24-445G9, complete sequence Length = 136140 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 ggctcagaggttcaagcat 63 ||||||||||||||||||| Sbjct: 19351 ggctcagaggttcaagcat 19333
>dbj|AP000033.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 4/28, complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 64462 atcagccacttcacacagg 64444
>gb|AC105068.19| Mus musculus chromosome 5, clone RP23-445H19, complete sequence Length = 199878 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 tcacacaggcaagcaagtg 37 ||||||||||||||||||| Sbjct: 47863 tcacacaggcaagcaagtg 47881
>gb|AE004578.1| Pseudomonas aeruginosa PAO1, section 139 of 529 of the complete genome Length = 11684 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 ctgctggcgatcgccgtcg 113 ||||||||||||||||||| Sbjct: 8343 ctgctggcgatcgccgtcg 8325
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 tcctgctggcgatcgccgt 111 ||||||||||||||||||| Sbjct: 3137166 tcctgctggcgatcgccgt 3137148
>dbj|AP004311.1| Synechocystis sp. PCC 6803 plasmid pSYSA DNA, complete genome Length = 103307 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 cctgctggcgatcgccgtc 112 ||||||||||||||||||| Sbjct: 97224 cctgctggcgatcgccgtc 97206
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 cgctcgtcctcgccgtcct 96 ||||||||||||||||||| Sbjct: 180637 cgctcgtcctcgccgtcct 180655
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 cgctcgtcctcgccgtcct 96 ||||||||||||||||||| Sbjct: 180637 cgctcgtcctcgccgtcct 180655
>dbj|AP001713.1| Homo sapiens genomic DNA, chromosome 21q, section 57/105 Length = 340000 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 309598 atcagccacttcacacagg 309616
>gb|AE017222.1| Thermus thermophilus HB27 plasmid pTT27, complete sequence Length = 232605 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cctcgccgtcctgctggcg 103 ||||||||||||||||||| Sbjct: 54011 cctcgccgtcctgctggcg 54029
>gb|L22864.1|STMWHIB12X Streptomyces aureofaciens whiB operon, complete sequence Length = 4615 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cgtcctcgccgtcctgctg 100 ||||||||||||||||||| Sbjct: 2563 cgtcctcgccgtcctgctg 2581
>dbj|AP000268.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:D1, complete sequence Length = 52777 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 8192 atcagccacttcacacagg 8210
>dbj|AP000178.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 5/21, complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 72437 atcagccacttcacacagg 72455
>dbj|AB001637.1| Thermus thermophilus DNA for photolyase, complete cds Length = 1677 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cctcgccgtcctgctggcg 103 ||||||||||||||||||| Sbjct: 1646 cctcgccgtcctgctggcg 1664
>dbj|AP000102.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 5/20 Length = 100000 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 72437 atcagccacttcacacagg 72455
>dbj|AB011111.2| Homo sapiens mRNA for KIAA0539 protein, partial cds Length = 7594 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 atcagccacttcacacagg 27 ||||||||||||||||||| Sbjct: 3499 atcagccacttcacacagg 3481 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 993,295 Number of Sequences: 3902068 Number of extensions: 993295 Number of successful extensions: 69145 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67361 Number of HSP's gapped (non-prelim): 1784 length of query: 140 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 119 effective length of database: 17,151,101,840 effective search space: 2040981118960 effective search space used: 2040981118960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
