ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet122g10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence Length = 1296 Score = 220 bits (111), Expect = 3e-54 Identities = 348/427 (81%) Strand = Plus / Plus Query: 26 atggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgaggaa 85 ||||||||||||||||||||| |||| |||||||| || ||||| || ||||| || | Sbjct: 49 atggaggcgctcgtggtgcggcagctgggcgatcccaccctgccccctggcggtgaagcc 108 Query: 86 tctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacctca 145 || ||||| || || ||||| || || | || | || ||| |||| |||||||| | Sbjct: 109 tccccgttcgccgcggtctctggggatcacccagtgccggagatctcatcgccgacggct 168 Query: 146 gtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagggc 205 || || ||||| || ||||||||||||||||| ||||| |||||||| || || |||||| Sbjct: 169 gtccgagtgcgagtcgcggcgaccagcctcaacttcgccacgttcctccaggtgcagggc 228 Query: 206 aagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcgtc 265 |||||||||||||| |||||||| || |||||||| || ||||||||| | ||||| ||| Sbjct: 229 aagtaccaggagcggcccccgcttccgttcgtgcctggatccgactactctggcgtggtc 288 Query: 266 gacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcgcc 325 ||||| ||||| |||||||| || | || || ||||||||||||||||||||| | || Sbjct: 289 gacgcagtcggtcccggcgtgcgtgggctccggcccggcgaccgcgtctgctcctttacc 348 Query: 326 agcgtcgggtccttcgccgagtttatcgtcgccgacgagaaggcactatacgtagtccct 385 || |||| |||||||| || || ||||||||||| |||||| |||| | || ||| Sbjct: 349 ggcctcggttccttcgctgacttcatcgtcgccgaggagaagcagctatttttggtgcct 408 Query: 386 gatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcatttg 445 |||||||| ||||||||| | ||||| || ||||| || |||||||||||||| |||||| Sbjct: 409 gatggatgcgacctggtcacagctggggctttaccagttgcatttggtacatcacatttg 468 Query: 446 gcccttg 452 ||||||| Sbjct: 469 gcccttg 475
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01, complete sequence Length = 117724 Score = 206 bits (104), Expect = 5e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 24 aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 83 ||||||| ||||||||||||||| |||||| || || |||||| | ||||||||||||| Sbjct: 3317 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 3376 Query: 84 aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 143 || ||||| ||| | ||| |||| |||| ||| || | |||| | |||||||| | Sbjct: 3377 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 3436 Query: 144 cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 203 | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || |||| Sbjct: 3437 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 3496 Query: 204 gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 263 |||||||||||||||||||| |||| || ||||| || || ||||||||||| || ||| Sbjct: 3497 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 3556 Query: 264 tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 323 |||||||||||||||||| ||| || || | |||||||| |||||||||||| ||||| Sbjct: 3557 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 3616 Query: 324 ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 367 || |||||| |||||||| || | |||||||||||||||||| Sbjct: 3617 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 3660 Score = 109 bits (55), Expect = 8e-21 Identities = 87/95 (91%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 383 cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 442 ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 4702 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 4761 Query: 443 ttggcccttg-ccacagagct-cactaaaggctgg 475 |||||||||| ||||||||| |||||||||||| Sbjct: 4762 ttggcccttgtacacagagctgaactaaaggctgg 4796
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07, complete sequence Length = 142134 Score = 206 bits (104), Expect = 5e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 24 aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 83 ||||||| ||||||||||||||| |||||| || || |||||| | ||||||||||||| Sbjct: 133864 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 133923 Query: 84 aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 143 || ||||| ||| | ||| |||| |||| ||| || | |||| | |||||||| | Sbjct: 133924 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 133983 Query: 144 cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 203 | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || |||| Sbjct: 133984 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 134043 Query: 204 gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 263 |||||||||||||||||||| |||| || ||||| || || ||||||||||| || ||| Sbjct: 134044 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 134103 Query: 264 tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 323 |||||||||||||||||| ||| || || | |||||||| |||||||||||| ||||| Sbjct: 134104 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 134163 Query: 324 ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 367 || |||||| |||||||| || | |||||||||||||||||| Sbjct: 134164 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 134207 Score = 109 bits (55), Expect = 8e-21 Identities = 87/95 (91%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 383 cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 442 ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 135249 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 135308 Query: 443 ttggcccttg-ccacagagct-cactaaaggctgg 475 |||||||||| ||||||||| |||||||||||| Sbjct: 135309 ttggcccttgtacacagagctgaactaaaggctgg 135343
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 206 bits (104), Expect = 5e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 24 aaatggaggcgctcgtggtgcggaagctcggcgatccaacgctgccgcccggcggcgagg 83 ||||||| ||||||||||||||| |||||| || || |||||| | ||||||||||||| Sbjct: 14274531 aaatggacgcgctcgtggtgcggcggctcggggaccccacgctggcccccggcggcgagg 14274590 Query: 84 aatctccgtttgcggcagtctccggtgaccgaccgattccagagctctcctcgccgacct 143 || ||||| ||| | ||| |||| |||| ||| || | |||| | |||||||| | Sbjct: 14274591 cctccccgttcgcgccggtcaccggggaccacccggcgccggcgctcgcgtcgccgacgt 14274650 Query: 144 cagtgcgggtgcgcgtggcggcgaccagcctcaatttcgcgacgttccttcaagtccagg 203 | |||||||||||||||||||| ||||||||||| ||||| || | ||| || || |||| Sbjct: 14274651 ccgtgcgggtgcgcgtggcggccaccagcctcaacttcgccacctacctgcaggtacagg 14274710 Query: 204 gcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcgtcg 263 |||||||||||||||||||| |||| || ||||| || || ||||||||||| || ||| Sbjct: 14274711 gcaagtaccaggagcgccccgcgctaccgttcgtcccgggctccgactacgcggggttcg 14274770 Query: 264 tcgacgccgtcggccccggcgtacgcagacttcgccccggcgaccgcgtctgctccctcg 323 |||||||||||||||||| ||| || || | |||||||| |||||||||||| ||||| Sbjct: 14274771 tcgacgccgtcggccccgccgtgcggaggttccgccccggggaccgcgtctgcggcctcg 14274830 Query: 324 ccagcgtcgggtccttcgccgagtttatcgtcgccgacgagaag 367 || |||||| |||||||| || | |||||||||||||||||| Sbjct: 14274831 ccgccgtcggctccttcgcggatctcatcgtcgccgacgagaag 14274874 Score = 109 bits (55), Expect = 8e-21 Identities = 87/95 (91%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 383 cctgatggatgtgacctggtcgctgctggagcattacctgtggcatttggtacatcgcat 442 ||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 14275916 cctgatggatgtgaccttgttgctgctggagcattgcctgttgcatttggtacatcgcat 14275975 Query: 443 ttggcccttg-ccacagagct-cactaaaggctgg 475 |||||||||| ||||||||| |||||||||||| Sbjct: 14275976 ttggcccttgtacacagagctgaactaaaggctgg 14276010
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 201 agggcaagtaccaggagcgccccccgctgcccttcgtgccagggtccgactacgccggcg 260 ||||||||||||||| |||||| ||||||||||||||||| || |||| | |||||||| Sbjct: 51546 agggcaagtaccaggcgcgcccgccgctgcccttcgtgcccggcgccgagttcgccggcg 51487 Query: 261 tcgtcga 267 ||||||| Sbjct: 51486 tcgtcga 51480
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 255 ccggcgtcgtcgacgccgtcggc 277 ||||||||||||||||||||||| Sbjct: 224823 ccggcgtcgtcgacgccgtcggc 224845
>gb|AY644464.1| Saccharum officinarum mitochondrial uncoupling protein 5 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1532 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Plus Query: 249 actacgccggcgtcgtcgacgccgtcggcc 278 ||||||||||||||| ||||||| |||||| Sbjct: 829 actacgccggcgtcggcgacgccatcggcc 858
>gb|AY644463.1| Saccharum officinarum mitochondrial uncoupling protein 4 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1575 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Plus Query: 249 actacgccggcgtcgtcgacgccgtcggcc 278 ||||||||||||||| ||||||| |||||| Sbjct: 882 actacgccggcgtcggcgacgccatcggcc 911
>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence Length = 184338 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 cggcgtcgtcgacgccgtcggc 277 |||||||||||||||||||||| Sbjct: 57218 cggcgtcgtcgacgccgtcggc 57239
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 256 cggcgtcgtcgacgccgtcggccccggcgt 285 |||||||||||| |||||||||||||||| Sbjct: 761732 cggcgtcgtcgaatccgtcggccccggcgt 761703
>ref|XM_964159.1| PREDICTED: Tribolium castaneum similar to Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1) (LOC657717), mRNA Length = 7833 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 253 cgccggcgtcgtcgacgccgtcggc 277 ||||||||||||||||| ||||||| Sbjct: 4806 cgccggcgtcgtcgacgacgtcggc 4782
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 cgactacgccggcgtcgtcga 267 ||||||||||||||||||||| Sbjct: 5170274 cgactacgccggcgtcgtcga 5170294
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 202 gggcaagtaccaggagcgccccccgctgcccttcgtg 238 |||| ||||||||| ||||| ||||||||||||||| Sbjct: 264883 gggccagtaccaggttcgcccgccgctgcccttcgtg 264919
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 gagtttatcgtcgccgacgag 364 ||||||||||||||||||||| Sbjct: 1857843 gagtttatcgtcgccgacgag 1857823 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 caacgctgccgcccggcggcg 80 ||||||||||||||||||||| Sbjct: 317856 caacgctgccgcccggcggcg 317876
>gb|AY642232.1| Plasmodium knowlesi Pk1(B+)1+ clone 4 SICAvar mRNA, partial sequence Length = 3799 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 cggcgtcgtcgacgccgtcg 275 |||||||||||||||||||| Sbjct: 1072 cggcgtcgtcgacgccgtcg 1091
>ref|NM_197856.1| Oryza sativa (japonica cultivar-group) putative carnitine/acylcarnitine translocase (OSJNBa0003O19.7), mRNA Length = 1580 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 tacgccggcgtcgtcgacgccgtc 274 |||||||||| ||||||||||||| Sbjct: 214 tacgccggcgccgtcgacgccgtc 237
>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein (OSJNBb0015I11.17), mRNA Length = 1110 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 cgccggcgtcgtcgacgccgtcgg 276 |||||||| ||||||||||||||| Sbjct: 484 cgccggcgacgtcgacgccgtcgg 461
>ref|NM_196979.1| Oryza sativa (japonica cultivar-group) putative alcohol oxidase (OSJNBa0001K12.13), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 tcgtcgacgccgtcggccccggcg 284 |||||||||||||||||| ||||| Sbjct: 1235 tcgtcgacgccgtcggccgcggcg 1258
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 254 gccggcgtcgtcgacgccgtcggccccggcgt 285 |||||||| ||||| || |||||||||||||| Sbjct: 1858024 gccggcgtggtcgaagcggtcggccccggcgt 1858055
>gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome Length = 25260 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 cccccgctgcccttcgtgcc 240 |||||||||||||||||||| Sbjct: 24720 cccccgctgcccttcgtgcc 24701
>gb|AC004020.1|HUAC004020 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-319E8, complete sequence Length = 153773 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 accaacctaggaaatggagg 32 |||||||||||||||||||| Sbjct: 9098 accaacctaggaaatggagg 9117
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cgtcgtcgacgccgtcggcc 278 |||||||||||||||||||| Sbjct: 159813 cgtcgtcgacgccgtcggcc 159794
>emb|AJ630120.2| Hordeum vulgare subsp. vulgare mRNA for C2 domain-containing protein, clone Chromi12 Length = 1274 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 acgccggcgtcgtcgacgccgtcg 275 |||||||||||||||||| ||||| Sbjct: 403 acgccggcgtcgtcgacgacgtcg 380
>gb|AC090041.13| Homo sapiens 12 BAC RP11-239F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108979 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 tggagcattacctgtggcat 428 |||||||||||||||||||| Sbjct: 95772 tggagcattacctgtggcat 95753
>gb|DQ397840.1| Cenarchaeum symbiosum clone C05D01, complete sequence Length = 37104 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cgctgccgcccggcggcgag 82 |||||||||||||||||||| Sbjct: 31529 cgctgccgcccggcggcgag 31510
>gb|DQ397593.2| Cenarchaeum symbiosum clone C03B12, complete sequence Length = 38618 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgctgccgcccggcggcgag 82 |||||||||||||||||||| Sbjct: 18853 cgctgccgcccggcggcgag 18872
>gb|DQ397567.1| Cenarchaeum symbiosum clone C07B06, complete sequence Length = 41363 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cgctgccgcccggcggcgag 82 |||||||||||||||||||| Sbjct: 40955 cgctgccgcccggcggcgag 40936
>gb|AE012140.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 48 of 460 of the complete genome Length = 13420 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 tgcgcgtggcggcgaccagcctca 176 |||||||||||||| ||||||||| Sbjct: 11794 tgcgcgtggcggcgcccagcctca 11771
>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete sequence Length = 144724 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 tcgtcgacgccgtcggccccggcg 284 |||||||||||||||||| ||||| Sbjct: 87077 tcgtcgacgccgtcggccgcggcg 87100
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 cgccggcgtcgtcgacgccgtcgg 276 |||||||| ||||||||||||||| Sbjct: 107714 cgccggcgacgtcgacgccgtcgg 107691
>gb|AC010601.6| Homo sapiens chromosome 16 clone CTA-481E9, complete sequence Length = 110222 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 accaacctaggaaatggagg 32 |||||||||||||||||||| Sbjct: 36643 accaacctaggaaatggagg 36624
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 tgcgcgtggcggcgaccagcctca 176 |||||||||||||| ||||||||| Sbjct: 529915 tgcgcgtggcggcgcccagcctca 529892
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 tacgccggcgtcgtcgacgccgtc 274 |||||||||| ||||||||||||| Sbjct: 22259842 tacgccggcgccgtcgacgccgtc 22259819 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 cgccggcgtcgtcgacgccgtcgg 276 |||||||| ||||||||||||||| Sbjct: 20706262 cgccggcgacgtcgacgccgtcgg 20706239 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 tcgtcgacgccgtcggccccggcg 284 |||||||||||||||||| ||||| Sbjct: 17105259 tcgtcgacgccgtcggccgcggcg 17105236
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 tacgccggcgtcgtcgacgccgtc 274 |||||||||| ||||||||||||| Sbjct: 77085 tacgccggcgccgtcgacgccgtc 77062
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 254 gccggcgtcgtcgacgccgtcggccccg 281 |||||||| |||||||||||||| |||| Sbjct: 5918543 gccggcgtggtcgacgccgtcgggcccg 5918570
>gb|AE005133.1| Halobacterium sp. NRC-1 section 164 of 170 of the complete genome Length = 12130 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 acgccggcgtcgtcgacgccgtcg 275 |||||| ||||||||||||||||| Sbjct: 10324 acgccgccgtcgtcgacgccgtcg 10347
>gb|AE005054.1| Halobacterium sp. NRC-1 section 85 of 170 of the complete genome Length = 10173 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cggcgtcgtcgacgccgtcg 275 |||||||||||||||||||| Sbjct: 4128 cggcgtcgtcgacgccgtcg 4109
>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full insert sequence Length = 1488 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 cgccggcgtcgtcgacgccgtcgg 276 |||||||| ||||||||||||||| Sbjct: 160 cgccggcgacgtcgacgccgtcgg 137
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 cgactacgccggcgtcgtcgacgccgtc 274 |||| |||||||||||||| |||||||| Sbjct: 2278755 cgacgacgccggcgtcgtcaacgccgtc 2278782
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 tacgccggcgtcgtcgacgccgtc 274 |||||||||| ||||||||||||| Sbjct: 22271910 tacgccggcgccgtcgacgccgtc 22271887 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 cgccggcgtcgtcgacgccgtcgg 276 |||||||| ||||||||||||||| Sbjct: 20717534 cgccggcgacgtcgacgccgtcgg 20717511 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 tcgtcgacgccgtcggccccggcg 284 |||||||||||||||||| ||||| Sbjct: 17114299 tcgtcgacgccgtcggccgcggcg 17114276 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,663,237 Number of Sequences: 3902068 Number of extensions: 2663237 Number of successful extensions: 50150 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49303 Number of HSP's gapped (non-prelim): 847 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
