ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet122f11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483799.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1710 Score = 165 bits (83), Expect = 1e-37 Identities = 149/171 (87%) Strand = Plus / Plus Query: 104 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 163 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 235 Query: 164 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcacgcatggccgacgccct 223 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 236 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 295 Query: 224 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 274 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 296 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 346
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 165 bits (83), Expect = 1e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 104 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 163 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 28157913 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 28157854 Query: 164 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcacgcatggccgacgccct 223 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 28157853 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 28157794 Query: 224 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 274 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28157793 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 28157743
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 165 bits (83), Expect = 1e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 104 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 163 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 155408 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 155349 Query: 164 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcacgcatggccgacgccct 223 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 155348 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 155289 Query: 224 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 274 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 155288 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 155238
>dbj|AK109443.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A03, full insert sequence Length = 1649 Score = 165 bits (83), Expect = 1e-37 Identities = 149/171 (87%) Strand = Plus / Plus Query: 104 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 163 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 210 Query: 164 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcacgcatggccgacgccct 223 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 211 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 270 Query: 224 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 274 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 271 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 321
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0543D10 Length = 134866 Score = 165 bits (83), Expect = 1e-37 Identities = 149/171 (87%) Strand = Plus / Minus Query: 104 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 163 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 41386 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 41327 Query: 164 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcacgcatggccgacgccct 223 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 41326 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 41267 Query: 224 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 274 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 41266 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 41216
>dbj|AK063515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G07, full insert sequence Length = 2418 Score = 165 bits (83), Expect = 1e-37 Identities = 149/171 (87%) Strand = Plus / Plus Query: 104 cctcgccaccttcgacctgccctacatcaccttctactacaaccagaagctgctcctcta 163 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 cctcgccacattcgacctcccctacatcaccttctactacaaccagaagctgctcctcta 292 Query: 164 ccgcctcgcggaaggcgccggcgacttccaagacgtcaccgcacgcatggccgacgccct 223 ||||||| | | |||||| |||||||| |||| | ||| |||||| ||| | |||| Sbjct: 293 ccgcctccccaacggcgcctccgacttccccgacgccgtcgcccgcatgtccgcctccct 352 Query: 224 cggggacgcgctcgcctacttctacccgctcgccggccggatccgccagga 274 | ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 353 ctccgacgccctcgcctacttctacccgctcgccggccgcatccgccagga 403
>ref|XM_465706.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1383 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 ||||||||||||||||||||| ||||||| Sbjct: 228 cttctacccgctcgccggccgcatccgcc 256
>gb|AC104712.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1333_C12, complete sequence Length = 102029 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 241 acttctacccgctcgccggccggatccgc 269 ||||||||||||||||||||||| ||||| Sbjct: 70409 acttctacccgctcgccggccggctccgc 70437
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 241 acttctacccgctcgccggccggatccgc 269 ||||||||||||||||||||||| ||||| Sbjct: 14439701 acttctacccgctcgccggccggctccgc 14439729 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 222 ctcggggacgcgctcgcctacttctacccgctcgccggccg 262 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 3209016 ctcgcggaggcgctcgtccactactacccgctcgccggccg 3209056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 ||||||||||||||||||||| ||||||| Sbjct: 16905950 cttctacccgctcgccggccgcatccgcc 16905978 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 |||||||||||||||| |||| ||||||| Sbjct: 16935108 cttctacccgctcgccagccgcatccgcc 16935136 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 16850150 cttctacccgctcgccggccg 16850170 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 16826408 cttctacccgctcgccggccg 16826428 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 16802268 cttctacccgctcgccggccg 16802288 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 16793049 cttctacccgctcgccggccg 16793029
>dbj|AP004132.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1089_A02 Length = 117908 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 ||||||||||||||||||||| ||||||| Sbjct: 48055 cttctacccgctcgccggccgcatccgcc 48083 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 |||||||||||||||| |||| ||||||| Sbjct: 77213 cttctacccgctcgccagccgcatccgcc 77241
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 ||||||||||||||||||||| ||||||| Sbjct: 107007 cttctacccgctcgccggccgcatccgcc 107035 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 |||||||||||||||| |||| ||||||| Sbjct: 136165 cttctacccgctcgccagccgcatccgcc 136193 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 51207 cttctacccgctcgccggccg 51227 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 27465 cttctacccgctcgccggccg 27485 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 3325 cttctacccgctcgccggccg 3345
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 cgacggcggtgcgctgtacgtcgatg 306 ||||||||||| |||||||||||||| Sbjct: 2587585 cgacggcggtgtgctgtacgtcgatg 2587610
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0090F16, complete sequence Length = 147341 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 acttctacccgctcgccggccggatc 266 |||||||||| ||||||||||||||| Sbjct: 93084 acttctaccccctcgccggccggatc 93109
>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24 Length = 311050 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 179 cgccggcgacttccaagacgtc 200 |||||||||||||||||||||| Sbjct: 197039 cgccggcgacttccaagacgtc 197018
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 113 cttcgacctgccctacatcacc 134 |||||||||||||||||||||| Sbjct: 2927589 cttcgacctgccctacatcacc 2927610 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 cgtcaccgcacgcatggccg 216 |||||||||||||||||||| Sbjct: 679947 cgtcaccgcacgcatggccg 679928
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 241 acttctacccgctcgccggccggatc 266 |||||||||| ||||||||||||||| Sbjct: 24729404 acttctaccccctcgccggccggatc 24729379
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 acttctacccgctcgccggccggatc 266 |||||||||| ||||||||||||||| Sbjct: 8091347 acttctaccctctcgccggccggatc 8091372
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 acttctacccgctcgccggccggatc 266 |||||||||| ||||||||||||||| Sbjct: 25119 acttctaccctctcgccggccggatc 25144
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Minus Query: 241 acttctacccgctcgccggccggatc 266 |||||||||| ||||||||||||||| Sbjct: 25041074 acttctaccccctcgccggccggatc 25041049
>ref|NM_185277.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 222 ctcggggacgcgctcgcctacttctacccgctcgccggccg 262 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 199 ctcgcggaggcgctcgtccactactacccgctcgccggccg 239
>ref|XM_465709.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1026 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccggatccgcc 270 |||||||||||||||| |||| ||||||| Sbjct: 261 cttctacccgctcgccagccgcatccgcc 289
>ref|XM_465703.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 246 cttctacccgctcgccggccg 266
>ref|XM_465699.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 252 cttctacccgctcgccggccg 272
>ref|XM_465691.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1791 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 328 cttctacccgctcgccggccg 348
>ref|XM_465687.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1518 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 258 cttctacccgctcgccggccg 278
>ref|XM_473803.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 240 cttctacccgctcgccggccg 260
>ref|XM_470761.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1375 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 ccctacatcaccttctactac 143 ||||||||||||||||||||| Sbjct: 501 ccctacatcaccttctactac 521
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 222 ctcggggacgcgctcgcctacttctacccgctcgccggccg 262 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 86733 ctcgcggaggcgctcgtccactactacccgctcgccggccg 86773
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 ccctacatcaccttctactac 143 ||||||||||||||||||||| Sbjct: 14939615 ccctacatcaccttctactac 14939595
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 ccctacatcaccttctactac 143 ||||||||||||||||||||| Sbjct: 103147 ccctacatcaccttctactac 103167
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 119849 cttctacccgctcgccggccg 119829
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 47872 cttctacccgctcgccggccg 47852
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 30644141 cttctacccgctcgccggccg 30644121
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ttctacccgctcgccggccgg 263 ||||||||||||||||||||| Sbjct: 4297826 ttctacccgctcgccggccgg 4297846
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 ccctacatcaccttctactac 143 ||||||||||||||||||||| Sbjct: 14934149 ccctacatcaccttctactac 14934129
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ttctacccgctcgccggccgg 263 ||||||||||||||||||||| Sbjct: 143047 ttctacccgctcgccggccgg 143067
>dbj|AP004302.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1122_H01 Length = 103030 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 98392 cttctacccgctcgccggccg 98412 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 74650 cttctacccgctcgccggccg 74670 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 50510 cttctacccgctcgccggccg 50530 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 41291 cttctacccgctcgccggccg 41271
>gb|AE004998.1| Halobacterium sp. NRC-1 section 29 of 170 of the complete genome Length = 10309 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 203 cgcacgcatggccgacgccctcggg 227 |||||||||||||||||| |||||| Sbjct: 3728 cgcacgcatggccgacgcgctcggg 3752
>dbj|AK109116.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C07, full insert sequence Length = 1183 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ttctacccgctcgccggccgg 263 ||||||||||||||||||||| Sbjct: 302 ttctacccgctcgccggccgg 322
>dbj|AK105836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E12, full insert sequence Length = 1511 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 250 cttctacccgctcgccggccg 270
>dbj|AK103832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A21, full insert sequence Length = 1790 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 327 cttctacccgctcgccggccg 347
>dbj|AK073495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F12, full insert sequence Length = 1526 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cttctacccgctcgccggccg 262 ||||||||||||||||||||| Sbjct: 265 cttctacccgctcgccggccg 285
>dbj|AK069332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full insert sequence Length = 1375 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 ccctacatcaccttctactac 143 ||||||||||||||||||||| Sbjct: 501 ccctacatcaccttctactac 521
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cgatggggaggagggtgcgga 322 ||||||||||||||||||||| Sbjct: 932185 cgatggggaggagggtgcgga 932165
>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05, complete sequence Length = 167317 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 222 ctcggggacgcgctcgcctacttctacccgctcgccggccg 262 |||| ||| ||||||| | ||| |||||||||||||||||| Sbjct: 2840 ctcgcggaggcgctcgtccactactacccgctcgccggccg 2880
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 51 gccgtcgcggtcaccggcacccgcacggtggc 82 |||||||| | ||||||||||||| ||||||| Sbjct: 227288 gccgtcgccgccaccggcacccgctcggtggc 227319
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 catggccgacgccctcggggacgc 232 ||||||||||||| |||||||||| Sbjct: 186656 catggccgacgccatcggggacgc 186633
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ggagatgcgcgggctgccgc 46 |||||||||||||||||||| Sbjct: 94121 ggagatgcgcgggctgccgc 94140
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 211 tggccgacgccctcggggacgcgctcgc 238 |||| ||||| ||||||||||||||||| Sbjct: 4052659 tggcggacgcgctcggggacgcgctcgc 4052632
>gb|AC079341.6| Homo sapiens BAC clone RP11-63B13 from 4, complete sequence Length = 149819 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 119 cctgccctacatcaccttctacta 142 |||||||||| ||||||||||||| Sbjct: 140928 cctgccctacttcaccttctacta 140951
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 gccgtcgcggtcaccggcacccgc 74 |||||||| ||||||||||||||| Sbjct: 2808185 gccgtcgccgtcaccggcacccgc 2808162
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tggccgacgccctcggggac 230 |||||||||||||||||||| Sbjct: 1097510 tggccgacgccctcggggac 1097529 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 tggccgtggacaacggagatgcgc 36 |||||||||||||||| ||||||| Sbjct: 235398 tggccgtggacaacggcgatgcgc 235421
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ccgtcgcggtcaccggcacccgca 75 |||||| ||||||||||||||||| Sbjct: 5591447 ccgtcgtggtcaccggcacccgca 5591470 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,935,168 Number of Sequences: 3902068 Number of extensions: 1935168 Number of successful extensions: 47308 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46324 Number of HSP's gapped (non-prelim): 978 length of query: 327 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 305 effective length of database: 17,147,199,772 effective search space: 5229895930460 effective search space used: 5229895930460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
