| Clone Name | baet122e05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 841 bits (424), Expect = 0.0 Identities = 447/452 (98%), Gaps = 2/452 (0%) Strand = Plus / Plus Query: 46 ttgagcgtgtgggagtcgaaggaggacatcgagatggccactgcatatgctcctcccatg 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttgagcgtgtgggagtcgaaggaggacatcgagatggccactgcatatgctcctcccatg 60 Query: 106 gcgagccaggtgatgaagagcggcttggcgtgctccaagccgcggggcatgtccggcgct 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gcgagccaggtgatgaagagcggcttggcgtgctccaagccgcggggcatgtccggcgct 120 Query: 166 tcgctcacccggaggccccgcttcgtcgtcaaggctgtcaagtctgacaagccgacgtac 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tcgctcacccggaggccccgcttcgtcgtcaaggctgtcaagtctgacaagccgacgtac 180 Query: 226 caattggtccagcccatcaacggcgacccgttcatcggcagcctggagacgccggtcacc 285 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caagtggtccagcccatcaacggcgacccgttcatcggcagcctggagacgccggtcacc 240 Query: 286 tccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagc 345 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 241 tccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcaccgccgtcagc 300 Query: 346 ccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcggccccttc 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcggccccttc 360 Query: 406 gcgctcactggcccgctccgc-acacgcccgtgcacggacaggccggcacactcggcgtc 464 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct: 361 gcgctcactggcccgctccgcaacacgcccgtgcacggacaggccggcacactcggcgcc 420 Query: 465 atcggactcgtct-catcctcagcgtctgcct 495 ||||||||||||| |||||||||||||||||| Sbjct: 421 atcggactcgtctccatcctcagcgtctgcct 452
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 412 bits (208), Expect = e-112 Identities = 371/422 (87%), Gaps = 5/422 (1%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 73 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 129 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttcgtcgtc 195 |||||||||||| |||| |||| || |||||||| || |||||||||||||| ||| Sbjct: 130 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttcacagtc 189 Query: 196 aaggctgtcaagtctgacaagccgacgtaccaattggtccagcccatcaacggcgacccg 255 ||||| || ||||||| ||||| |||||||| |||| ||||||||||| |||||||| Sbjct: 190 aaggccatccagtctgagaagccaacgtaccaggtggtgcagcccatcaatggcgacccc 249 Query: 256 ttcatcggcagcctggagacgccggtcacctccagccccctcgtcgcgtggtacctctcc 315 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 250 ttcatcggcagcctggagacgccggtgacctccagcccgctggtcgcctggtacctctcc 309 Query: 316 aacctccccgcctaccgcgccgccgtcagcccgctcctccgcggcatcgaggtcggcctc 375 |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 310 aacctcccggcgtaccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctc 369 Query: 376 gcccatggctacctcctcgtcggccccttcgcgctcactggcccgctccgc-acacgccc 434 ||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct: 370 gcccacggctacctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccg 429 Query: 435 gtgcacggacaggccggcacactcggcgtcatcggactcgtc-tcatcctcagcgtctgc 493 |||||||| ||||||||| | ||||||| | || |||||| |||||||||||||||| Sbjct: 430 gtgcacggccaggccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgc 489 Query: 494 ct 495 || Sbjct: 490 ct 491
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 412 bits (208), Expect = e-112 Identities = 371/422 (87%), Gaps = 5/422 (1%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 68 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 124 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttcgtcgtc 195 |||||||||||| |||| |||| || |||||||| || |||||||||||||| ||| Sbjct: 125 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttcacagtc 184 Query: 196 aaggctgtcaagtctgacaagccgacgtaccaattggtccagcccatcaacggcgacccg 255 ||||| || ||||||| ||||| |||||||| |||| ||||||||||| |||||||| Sbjct: 185 aaggccatccagtctgagaagccaacgtaccaggtggtgcagcccatcaatggcgacccc 244 Query: 256 ttcatcggcagcctggagacgccggtcacctccagccccctcgtcgcgtggtacctctcc 315 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 245 ttcatcggcagcctggagacgccggtgacctccagcccgctggtcgcctggtacctctcc 304 Query: 316 aacctccccgcctaccgcgccgccgtcagcccgctcctccgcggcatcgaggtcggcctc 375 |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 305 aacctcccggcgtaccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctc 364 Query: 376 gcccatggctacctcctcgtcggccccttcgcgctcactggcccgctccgc-acacgccc 434 ||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct: 365 gcccacggctacctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccg 424 Query: 435 gtgcacggacaggccggcacactcggcgtcatcggactcgtc-tcatcctcagcgtctgc 493 |||||||| ||||||||| | ||||||| | || |||||| |||||||||||||||| Sbjct: 425 gtgcacggccaggccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgc 484 Query: 494 ct 495 || Sbjct: 485 ct 486
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 412 bits (208), Expect = e-112 Identities = 371/422 (87%), Gaps = 5/422 (1%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 90 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 146 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttcgtcgtc 195 |||||||||||| |||| |||| || |||||||| || |||||||||||||| ||| Sbjct: 147 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttcacagtc 206 Query: 196 aaggctgtcaagtctgacaagccgacgtaccaattggtccagcccatcaacggcgacccg 255 ||||| || ||||||| ||||| |||||||| |||| ||||||||||| |||||||| Sbjct: 207 aaggccatccagtctgagaagccaacgtaccaggtggtgcagcccatcaatggcgacccc 266 Query: 256 ttcatcggcagcctggagacgccggtcacctccagccccctcgtcgcgtggtacctctcc 315 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 267 ttcatcggcagcctggagacgccggtgacctccagcccgctggtcgcctggtacctctcc 326 Query: 316 aacctccccgcctaccgcgccgccgtcagcccgctcctccgcggcatcgaggtcggcctc 375 |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 327 aacctcccggcgtaccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctc 386 Query: 376 gcccatggctacctcctcgtcggccccttcgcgctcactggcccgctccgc-acacgccc 434 ||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct: 387 gcccacggctacctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccg 446 Query: 435 gtgcacggacaggccggcacactcggcgtcatcggactcgtc-tcatcctcagcgtctgc 493 |||||||| ||||||||| | ||||||| | || |||||| |||||||||||||||| Sbjct: 447 gtgcacggccaggccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgc 506 Query: 494 ct 495 || Sbjct: 507 ct 508
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 404 bits (204), Expect = e-109 Identities = 370/422 (87%), Gaps = 5/422 (1%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 118 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 174 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttcgtcgtc 195 |||||||||||| |||| |||| || |||||||| || |||||||||||||| | | Sbjct: 175 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttcacagcc 234 Query: 196 aaggctgtcaagtctgacaagccgacgtaccaattggtccagcccatcaacggcgacccg 255 ||||| || ||||||| ||||| |||||||| |||| ||||||||||| |||||||| Sbjct: 235 aaggccatccagtctgagaagccaacgtaccaggtggtgcagcccatcaatggcgacccc 294 Query: 256 ttcatcggcagcctggagacgccggtcacctccagccccctcgtcgcgtggtacctctcc 315 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 295 ttcatcggcagcctggagacgccggtgacctccagcccgctggtcgcctggtacctctcc 354 Query: 316 aacctccccgcctaccgcgccgccgtcagcccgctcctccgcggcatcgaggtcggcctc 375 |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 355 aacctcccggcgtaccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctc 414 Query: 376 gcccatggctacctcctcgtcggccccttcgcgctcactggcccgctccgc-acacgccc 434 ||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct: 415 gcccacggctacctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccg 474 Query: 435 gtgcacggacaggccggcacactcggcgtcatcggactcgtc-tcatcctcagcgtctgc 493 |||||||| ||||||||| | ||||||| | || |||||| |||||||||||||||| Sbjct: 475 gtgcacggccaggccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgc 534 Query: 494 ct 495 || Sbjct: 535 ct 536
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 404 bits (204), Expect = e-109 Identities = 370/422 (87%), Gaps = 5/422 (1%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 118 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 174 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttcgtcgtc 195 |||||||||||| |||| |||| || |||||||| || |||||||||||||| | | Sbjct: 175 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttcacagcc 234 Query: 196 aaggctgtcaagtctgacaagccgacgtaccaattggtccagcccatcaacggcgacccg 255 ||||| || ||||||| ||||| |||||||| |||| ||||||||||| |||||||| Sbjct: 235 aaggccatccagtctgagaagccaacgtaccaggtggtgcagcccatcaatggcgacccc 294 Query: 256 ttcatcggcagcctggagacgccggtcacctccagccccctcgtcgcgtggtacctctcc 315 |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||| Sbjct: 295 ttcatcggcagcctggagacgccggtgacctccagcccgctggtcgcctggtacctctcc 354 Query: 316 aacctccccgcctaccgcgccgccgtcagcccgctcctccgcggcatcgaggtcggcctc 375 |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 355 aacctcccggcgtaccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctc 414 Query: 376 gcccatggctacctcctcgtcggccccttcgcgctcactggcccgctccgc-acacgccc 434 ||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct: 415 gcccacggctacctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccg 474 Query: 435 gtgcacggacaggccggcacactcggcgtcatcggactcgtc-tcatcctcagcgtctgc 493 |||||||| ||||||||| | ||||||| | || |||||| |||||||||||||||| Sbjct: 475 gtgcacggccaggccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgc 534 Query: 494 ct 495 || Sbjct: 535 ct 536
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 321 bits (162), Expect = 1e-84 Identities = 251/278 (90%), Gaps = 2/278 (0%) Strand = Plus / Plus Query: 220 acgtaccaattggtccagcccatcaacggcgacccgttcatcggcagcctggagacgccg 279 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1010 acgtaccaggtggtgcagcccatcaacggcgacccgttcatcggcagcctggagacgccg 1069 Query: 280 gtcacctccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcgccgcc 339 |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||| Sbjct: 1070 gtcacctccagcccgctcgtggcgtggtacctctccaacctcccggcctaccgcaccgcc 1129 Query: 340 gtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcgtcggc 399 || |||||||| || || ||| |||||||||||||||| || |||||||||||||| || Sbjct: 1130 gtgagcccgctgctgcggggcgtcgaggtcggcctcgcgcacggctacctcctcgtgggg 1189 Query: 400 cccttcgcgctcactggcccgctccgca-cacgcccgtgcacggacaggccggcacactc 458 |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| | ||| Sbjct: 1190 cccttcgcgctcacgggcccgctccgcagcacgcccgtgcacggccaggccggcgcgctc 1249 Query: 459 ggcgtcatcggactcgtc-tcatcctcagcgtctgcct 495 |||| | ||| |||||| |||||||||||||||||| Sbjct: 1250 ggcgccgccggcctcgtcgccatcctcagcgtctgcct 1287 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 98 ctcccatggcgagccaggtgatgaagagc 126 ||||||||||||||||||||||||||||| Sbjct: 879 ctcccatggcgagccaggtgatgaagagc 907
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 315 bits (159), Expect = 8e-83 Identities = 254/283 (89%), Gaps = 2/283 (0%) Strand = Plus / Plus Query: 215 agccgacgtaccaattggtccagcccatcaacggcgacccgttcatcggcagcctggaga 274 |||| |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 13160888 agccaacgtaccaggtggtgcagcccatcaatggcgaccccttcatcggcagcctggaga 13160947 Query: 275 cgccggtcacctccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcg 334 ||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||| Sbjct: 13160948 cgccggtgacctccagcccgctggtcgcctggtacctctccaacctcccggcgtaccgca 13161007 Query: 335 ccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcg 394 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 13161008 ccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcg 13161067 Query: 395 tcggccccttcgcgctcactggcccgctccgc-acacgcccgtgcacggacaggccggca 453 |||| |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| Sbjct: 13161068 tcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcg 13161127 Query: 454 cactcggcgtcatcggactcgtc-tcatcctcagcgtctgcct 495 | ||||||| | || |||||| |||||||||||||||||| Sbjct: 13161128 ccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcct 13161170 Score = 103 bits (52), Expect = 5e-19 Identities = 99/114 (86%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 13159779 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 13159835 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttc 189 |||||||||||| |||| |||| || |||||||| || |||||||||||||| Sbjct: 13159836 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttc 13159889
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 315 bits (159), Expect = 8e-83 Identities = 254/283 (89%), Gaps = 2/283 (0%) Strand = Plus / Plus Query: 215 agccgacgtaccaattggtccagcccatcaacggcgacccgttcatcggcagcctggaga 274 |||| |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 13115163 agccaacgtaccaggtggtgcagcccatcaatggcgaccccttcatcggcagcctggaga 13115222 Query: 275 cgccggtcacctccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcg 334 ||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||| Sbjct: 13115223 cgccggtgacctccagcccgctggtcgcctggtacctctccaacctcccggcgtaccgca 13115282 Query: 335 ccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcg 394 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 13115283 ccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcg 13115342 Query: 395 tcggccccttcgcgctcactggcccgctccgc-acacgcccgtgcacggacaggccggca 453 |||| |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| Sbjct: 13115343 tcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcg 13115402 Query: 454 cactcggcgtcatcggactcgtc-tcatcctcagcgtctgcct 495 | ||||||| | || |||||| |||||||||||||||||| Sbjct: 13115403 ccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcct 13115445 Score = 103 bits (52), Expect = 5e-19 Identities = 99/114 (86%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 13114054 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 13114110 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttc 189 |||||||||||| |||| |||| || |||||||| || |||||||||||||| Sbjct: 13114111 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttc 13114164
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 315 bits (159), Expect = 8e-83 Identities = 254/283 (89%), Gaps = 2/283 (0%) Strand = Plus / Minus Query: 215 agccgacgtaccaattggtccagcccatcaacggcgacccgttcatcggcagcctggaga 274 |||| |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 169854 agccaacgtaccaggtggtgcagcccatcaatggcgaccccttcatcggcagcctggaga 169795 Query: 275 cgccggtcacctccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcg 334 ||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||| Sbjct: 169794 cgccggtgacctccagcccgctggtcgcctggtacctctccaacctcccggcgtaccgca 169735 Query: 335 ccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcg 394 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 169734 ccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcg 169675 Query: 395 tcggccccttcgcgctcactggcccgctccgc-acacgcccgtgcacggacaggccggca 453 |||| |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| Sbjct: 169674 tcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcg 169615 Query: 454 cactcggcgtcatcggactcgtc-tcatcctcagcgtctgcct 495 | ||||||| | || |||||| |||||||||||||||||| Sbjct: 169614 ccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcct 169572 Score = 103 bits (52), Expect = 5e-19 Identities = 99/114 (86%), Gaps = 3/114 (2%) Strand = Plus / Minus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 170963 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 170907 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttc 189 |||||||||||| |||| |||| || |||||||| || |||||||||||||| Sbjct: 170906 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttc 170853
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 315 bits (159), Expect = 8e-83 Identities = 254/283 (89%), Gaps = 2/283 (0%) Strand = Plus / Plus Query: 215 agccgacgtaccaattggtccagcccatcaacggcgacccgttcatcggcagcctggaga 274 |||| |||||||| |||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct: 150091 agccaacgtaccaggtggtgcagcccatcaatggcgaccccttcatcggcagcctggaga 150150 Query: 275 cgccggtcacctccagccccctcgtcgcgtggtacctctccaacctccccgcctaccgcg 334 ||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||| Sbjct: 150151 cgccggtgacctccagcccgctggtcgcctggtacctctccaacctcccggcgtaccgca 150210 Query: 335 ccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctacctcctcg 394 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 150211 ccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctacctcctcg 150270 Query: 395 tcggccccttcgcgctcactggcccgctccgc-acacgcccgtgcacggacaggccggca 453 |||| |||||||||||||| |||||||||||| ||||||| |||||||| ||||||||| Sbjct: 150271 tcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccaggccggcg 150330 Query: 454 cactcggcgtcatcggactcgtc-tcatcctcagcgtctgcct 495 | ||||||| | || |||||| |||||||||||||||||| Sbjct: 150331 ccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcct 150373 Score = 103 bits (52), Expect = 5e-19 Identities = 99/114 (86%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 148982 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 149038 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttc 189 |||||||||||| |||| |||| || |||||||| || |||||||||||||| Sbjct: 149039 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttc 149092
>dbj|AK063111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D07, full insert sequence Length = 470 Score = 103 bits (52), Expect = 5e-19 Identities = 99/114 (86%), Gaps = 3/114 (2%) Strand = Plus / Plus Query: 76 gagatggccactgcatatgctcctcccatggcgagccaggtgatgaagagcggcttggcg 135 |||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||| | Sbjct: 90 gagatggccactgcttatgctcc---catggcgagccagctgatgaagagcagcttggtg 146 Query: 136 tgctccaagccgcggggcatgtccggcgcttcgctcacccggaggccccgcttc 189 |||||||||||| |||| |||| || |||||||| || |||||||||||||| Sbjct: 147 tgctccaagccgagggggctgtctggtgcttcgctgacaaggaggccccgcttc 200
>ref|NM_117349.2| Arabidopsis thaliana unknown protein AT4G12800 mRNA, complete cds Length = 984 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 398 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 457 Query: 359 g 359 | Sbjct: 458 g 458
>emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35 Length = 199280 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 3105 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 3164 Query: 359 g 359 | Sbjct: 3165 g 3165
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 194212 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 194271 Query: 359 g 359 | Sbjct: 194272 g 194272
>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project) Length = 79375 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 52600 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 52659 Query: 359 g 359 | Sbjct: 52660 g 52660
>emb|AJ245867.1|ATH245867 Arabidopsis thaliana mRNA for photosystem I subunit XI precursor Length = 928 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 366 tcgcgtggtacctttccaacctccctggttaccgtaccgccgtcaaccctctcctccgcg 425 Query: 359 g 359 | Sbjct: 426 g 426
>gb|AY097427.1| Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 660 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 251 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 310 Query: 359 g 359 | Sbjct: 311 g 311
>gb|AF446350.1|AF446350 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 821 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 287 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 346 Query: 359 g 359 | Sbjct: 347 g 347
>gb|AY059949.1| Arabidopsis thaliana probable photosystem I chain XI precursor (At4g12800; T20K18.150) mRNA, complete cds Length = 853 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 293 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 352 Query: 359 g 359 | Sbjct: 353 g 353
>gb|AF428447.1|AF428447 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 842 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 287 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 346 Query: 359 g 359 | Sbjct: 347 g 347
>emb|BX826431.1|CNS0A4G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB26ZA06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 823 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 273 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 332 Query: 359 g 359 | Sbjct: 333 g 333
>emb|BX826834.1|CNS0A38Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 762 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 274 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 333 Query: 359 g 359 | Sbjct: 334 g 334
>emb|BX826723.1|CNS0A3CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZH08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 816 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 268 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 327 Query: 359 g 359 | Sbjct: 328 g 328
>emb|BX826537.1|CNS0A35T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 797 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 249 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctctcctccgcg 308 Query: 359 g 359 | Sbjct: 309 g 309
>gb|AY087339.1| Arabidopsis thaliana clone 34400 mRNA, complete sequence Length = 944 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| |||||||||| Sbjct: 399 tcgcgtggtacctttccaacctccctggttaccgtaccgccgtcaaccctctcctccgcg 458 Query: 359 g 359 | Sbjct: 459 g 459
>emb|BX841515.1|CNS09YGY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 837 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 299 tcgcgtggtacctctccaacctccccgcctaccgcgccgccgtcagcccgctcctccgcg 358 ||||||||||||| ||||||||||| | ||||| ||||||||| ||| || ||||||| Sbjct: 289 tcgcgtggtacctttccaacctccctggataccgtaccgccgtcaaccctcttctccgcg 348 Query: 359 g 359 | Sbjct: 349 g 349
>ref|XM_363340.1| Magnaporthe grisea 70-15 hypothetical protein (MG01266.4) partial mRNA Length = 1611 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 tcatcggcagcctggagacgcc 278 |||||||||||||||||||||| Sbjct: 1028 tcatcggcagcctggagacgcc 1007
>emb|BX255925.17| Human DNA sequence from clone RP13-122B23 on chromosome 9, complete sequence Length = 100719 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 29 ctgcaggcagagcagagttgag 50 |||||||||||||||||||||| Sbjct: 22900 ctgcaggcagagcagagttgag 22879
>dbj|AK128153.1| Homo sapiens cDNA FLJ46276 fis, clone TESTI4029676 Length = 2907 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 ctgcaggcagagcagagttgag 50 |||||||||||||||||||||| Sbjct: 294 ctgcaggcagagcagagttgag 315
>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence Length = 1630 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cgaggtcggcctcgcccatgg 383 ||||||||||||||||||||| Sbjct: 997 cgaggtcggcctcgcccatgg 977
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cccgcctaccgcgccgccgtc 342 ||||||||||||||||||||| Sbjct: 124872 cccgcctaccgcgccgccgtc 124892
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 acgccggtcacctccagcccc 294 ||||||||||||||||||||| Sbjct: 970905 acgccggtcacctccagcccc 970925
>ref|XM_726405.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g00570) partial mRNA Length = 1050 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 297 cgtcgcgtggtacctctccaacctccccg 325 |||||||||||||| ||||||||||||| Sbjct: 414 cgtcgcgtggtaccgttccaacctccccg 442
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 cccgcctaccgcgccgccgtc 342 ||||||||||||||||||||| Sbjct: 90752 cccgcctaccgcgccgccgtc 90732
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cccgcctaccgcgccgccgtc 342 ||||||||||||||||||||| Sbjct: 6453478 cccgcctaccgcgccgccgtc 6453498 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ctcctcgtcggccccttcgc 407 |||||||||||||||||||| Sbjct: 18238032 ctcctcgtcggccccttcgc 18238013 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cgacgtaccaattggtccag 237 |||||||||||||||||||| Sbjct: 5328198 cgacgtaccaattggtccag 5328179
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 295 ctcgtcgcgtggtacctctccaacctccccgcc 327 |||| |||||||| |||||||||||||| |||| Sbjct: 16116504 ctcgacgcgtggttcctctccaacctccgcgcc 16116536
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 cgcgctcactggcccgctccg 425 ||||||||||||||||||||| Sbjct: 4178355 cgcgctcactggcccgctccg 4178375 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 catcgaggtcggcctcgccc 379 |||||||||||||||||||| Sbjct: 8946139 catcgaggtcggcctcgccc 8946158
>gb|AY943952.1| Streptomyces sp. F11 plasmid pFP11, complete sequence Length = 35159 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 tcggcagcctggagacgccgg 280 ||||||||||||||||||||| Sbjct: 1728 tcggcagcctggagacgccgg 1748
>dbj|AP005726.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0028A18 Length = 151080 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 295 ctcgtcgcgtggtacctctccaacctccccgcc 327 |||| |||||||| |||||||||||||| |||| Sbjct: 54584 ctcgacgcgtggttcctctccaacctccgcgcc 54616
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cccgcctaccgcgccgccgtc 342 ||||||||||||||||||||| Sbjct: 6519945 cccgcctaccgcgccgccgtc 6519965 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ctcctcgtcggccccttcgc 407 |||||||||||||||||||| Sbjct: 18396929 ctcctcgtcggccccttcgc 18396910 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cgacgtaccaattggtccag 237 |||||||||||||||||||| Sbjct: 5394675 cgacgtaccaattggtccag 5394656
>gb|BC083003.1| Xenopus laevis cDNA clone IMAGE:3397120 Length = 1320 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gacatcgagatggccactgc 89 |||||||||||||||||||| Sbjct: 5 gacatcgagatggccactgc 24
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ctcctcgtcggccccttcgc 407 |||||||||||||||||||| Sbjct: 96245 ctcctcgtcggccccttcgc 96226
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gatgaagagcggcttggcgtgctc 140 ||||| |||||||||||||||||| Sbjct: 394400 gatgatgagcggcttggcgtgctc 394377
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ccgcctaccgcgccgccgtc 342 |||||||||||||||||||| Sbjct: 2510926 ccgcctaccgcgccgccgtc 2510945
>gb|BC074210.1| Xenopus laevis MGC83376 protein, mRNA (cDNA clone MGC:83376 IMAGE:7007890), complete cds Length = 1363 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gacatcgagatggccactgc 89 |||||||||||||||||||| Sbjct: 7 gacatcgagatggccactgc 26
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ccgcggcatcgaggtcggcc 373 |||||||||||||||||||| Sbjct: 2408060 ccgcggcatcgaggtcggcc 2408079 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 gcatcgaggtcggcctcgcc 378 |||||||||||||||||||| Sbjct: 577051 gcatcgaggtcggcctcgcc 577032
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gatgaagagcggcttggcgtgctc 140 ||||| |||||||||||||||||| Sbjct: 1125109 gatgatgagcggcttggcgtgctc 1125086
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ctcctcgtcggccccttcgc 407 |||||||||||||||||||| Sbjct: 5291 ctcctcgtcggccccttcgc 5272
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 347 cgctcctccgcggcatcgaggtcggcct 374 |||||||| ||||| ||||||||||||| Sbjct: 6590 cgctcctcagcggcgtcgaggtcggcct 6617
>gb|AC102609.7| Mus musculus, clone RP23-403I3, complete sequence Length = 208575 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gctgcaggcagagcagagttgagc 51 ||||| |||||||||||||||||| Sbjct: 202331 gctgccggcagagcagagttgagc 202308
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccgcggcatcgaggtcggcc 373 |||||||||||||||||||| Sbjct: 3193803 ccgcggcatcgaggtcggcc 3193784
>emb|AL391136.10| Human DNA sequence from clone RP11-304C14 on chromosome 10 Contains part of the TLL2 gene for tolloid-like 2, complete sequence Length = 66188 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gtggtacctctccaacctcc 322 |||||||||||||||||||| Sbjct: 62756 gtggtacctctccaacctcc 62775
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cgacgtaccaattggtccag 237 |||||||||||||||||||| Sbjct: 22017 cgacgtaccaattggtccag 22036
>gb|AE008817.1| Salmonella typhimurium LT2, section 121 of 220 of the complete genome Length = 20897 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ccccgcctaccgcgccgccg 340 |||||||||||||||||||| Sbjct: 7479 ccccgcctaccgcgccgccg 7498
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ccgcctaccgcgccgccgtc 342 |||||||||||||||||||| Sbjct: 88814 ccgcctaccgcgccgccgtc 88833
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 aggtcggcctcgcccatggc 384 |||||||||||||||||||| Sbjct: 217148 aggtcggcctcgcccatggc 217167
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 aggtcggcctcgcccatggc 384 |||||||||||||||||||| Sbjct: 215196 aggtcggcctcgcccatggc 215215
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccgcggcatcgaggtcggcc 373 |||||||||||||||||||| Sbjct: 173448 ccgcggcatcgaggtcggcc 173429
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 gatgaagagcggcttggcgtgctc 140 ||||| |||||||||||||||||| Sbjct: 1006069 gatgatgagcggcttggcgtgctc 1006046
>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14 Length = 306050 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ccgcctaccgcgccgccgtc 342 |||||||||||||||||||| Sbjct: 287801 ccgcctaccgcgccgccgtc 287820
>emb|AL627275.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 11/20 Length = 145050 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ccccgcctaccgcgccgccg 340 |||||||||||||||||||| Sbjct: 122470 ccccgcctaccgcgccgccg 122489
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 gcgccgccgtcagcccgctc 351 |||||||||||||||||||| Sbjct: 1686830 gcgccgccgtcagcccgctc 1686811
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 ccgcggcatcgaggtcggcc 373 |||||||||||||||||||| Sbjct: 2979654 ccgcggcatcgaggtcggcc 2979673
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tcgaggtcggcctcgcccat 381 |||||||||||||||||||| Sbjct: 4350722 tcgaggtcggcctcgcccat 4350703
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccgcggcatcgaggtcggcc 373 |||||||||||||||||||| Sbjct: 5407694 ccgcggcatcgaggtcggcc 5407675
>emb|AJ331687.1|HSA331687 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GA11C Length = 746 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 cctccccgcctaccgcgccgccgt 341 ||||||||||| |||||||||||| Sbjct: 85 cctccccgcctcccgcgccgccgt 108
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ccccgcctaccgcgccgccg 340 |||||||||||||||||||| Sbjct: 325379 ccccgcctaccgcgccgccg 325360
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ccccgcctaccgcgccgccg 340 |||||||||||||||||||| Sbjct: 2735845 ccccgcctaccgcgccgccg 2735864
>gb|AC104896.13| Mus musculus chromosome 1, clone RP23-299F18, complete sequence Length = 184316 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gctgcaggcagagcagagttgagc 51 ||||| |||||||||||||||||| Sbjct: 14532 gctgccggcagagcagagttgagc 14509 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,162,338 Number of Sequences: 3902068 Number of extensions: 3162338 Number of successful extensions: 60592 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59043 Number of HSP's gapped (non-prelim): 1524 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)