>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 201 SLSTIQRNHSQGNGLGGISGERRPC 275
           +L T+ R H  G G+G + GE + C
Sbjct: 293 TLETVTRQHPTGKGIGALQGEMKLC 317

>3MGH_CHLTE (Q8KBD5) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)|
          Length = 209

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 368 WREFISLAPVRAPTYPTPLKSFHKVGLESS 279
           WR+FI+ +P  + T P P     K GLESS
Sbjct: 180 WRKFIAGSPYISKTQPGPPPKKRKKGLESS 209

>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C|
           suppressor SKC1)
          Length = 1155

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 12/106 (11%)
 Frame = -3

Query: 344 PVRAPTYPTPLKSFHKVGLESS--------STGSSFPADSAKPVPLAVVSLDSRQGQWES 189
           P +  T PTP  + H + L SS        ST S F  +S K       +  +   Q+  
Sbjct: 172 PNQLSTPPTPKSAGHTMELHSSFNGKHSSSSTSSLFALESLKTQNRRSSNSSNHSSQYRR 231

Query: 188 R*SIHARH*LDDE----AFGYLKRVIVTPAVYPRLVEFLHFDIQST 63
             + H RH    +    +   +  +  TP VYP L+  +    + T
Sbjct: 232 HTNQHQRHHSRSKSSPVSLTEISMIKGTPLVYPALLSLIAIKFKQT 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,811,587
Number of Sequences: 219361
Number of extensions: 1049780
Number of successful extensions: 2465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)