ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet122b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (M... 64 3e-10
2MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503 61 2e-09
3MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3) 59 5e-09
4MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3) 55 8e-08
5MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1) 52 7e-07
6MT3_PICGL (Q40854) Metallothionein-like protein EMB30 47 4e-05
7ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor 30 2.7
8LAB_DROME (P10105) Homeotic protein labial (F24) (F90-2) 30 3.5
9DDL_RHIME (Q92NM4) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-a... 29 7.7
10GATA4_ARATH (O49743) GATA transcription factor 4 (AtGATA-4) 29 7.7

>MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (MWMT3)|
          Length = 65

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 27/39 (69%), Positives = 30/39 (76%)
 Frame = +2

Query: 89  CGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVAAGEE 205
           CGNCDC DKSQCVKKG SYG+ IVE EKS+ +EV    E
Sbjct: 4   CGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAE 42



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>MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503|
          Length = 63

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = +2

Query: 77  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVAAG 199
           MSDKCGNCDCAD SQCVKKG S  + IVE +KS+ E+V  G
Sbjct: 1   MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIEDVVMG 39



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>MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3)|
          Length = 65

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 77  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKS 175
           MSD CGNCDCADK+QCVKKG+SY   I+E EKS
Sbjct: 1   MSDTCGNCDCADKTQCVKKGSSYTADIIETEKS 33



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>MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3)|
          Length = 66

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 24/38 (63%), Positives = 27/38 (71%)
 Frame = +2

Query: 77  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV 190
           MS KC NCDCAD +QCVKKG SY +VIVE E    + V
Sbjct: 1   MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTV 38



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>MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1)|
          Length = 64

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +2

Query: 77  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV 190
           MS KC NCDC+D SQC KKG S+ +VIVE E    + V
Sbjct: 1   MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTV 38



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>MT3_PICGL (Q40854) Metallothionein-like protein EMB30|
          Length = 60

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 77  MSDKCGNCDCADKSQCVKKGTSY-GVVIVEAEKSHFEEVA 193
           MS  CGNCDCADKSQC KKG    G+V    E  H  +V+
Sbjct: 1   MSSDCGNCDCADKSQCTKKGFQIDGIVETSYEMGHGGDVS 40



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>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor|
          Length = 1470

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 258  PHLQSV--QEQLVPHLQPPFSSPAATSSKWLFSASTMTTP 145
            PH Q V  +E LVP+ +P F SP   SS    S+   T P
Sbjct: 1398 PHKQGVGSEESLVPYSKPSFPSPGGHSSSGTSSSKGSTGP 1437



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>LAB_DROME (P10105) Homeotic protein labial (F24) (F90-2)|
          Length = 635

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 375 FSNNQHTHKPHSYGWFLLWTN*GR*LAGGECSVAS*LHLPHLQSVQEQLVPHLQPP 208
           + N+ H H PH+  +    T      A      A   H PHLQ  Q+Q   HLQ P
Sbjct: 8   YGNHPHHHHPHANAYDGYSTTTAS-AANASSYFAPQQHQPHLQLQQQQQHQHLQQP 62



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>DDL_RHIME (Q92NM4) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 308

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +2

Query: 125 VKKGTSYGVVIVEAEKSHFEEVAAGEE 205
           V++G+S+GVVIV+ ++SH  +V    E
Sbjct: 138 VREGSSFGVVIVKEDQSHPPQVITSSE 164



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>GATA4_ARATH (O49743) GATA transcription factor 4 (AtGATA-4)|
          Length = 240

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 204 SSPAATSSKWLFSASTMTTP*LVPFFTHWLLSAQSQLPH---LSDMVEDLIS 58
           SS A++ + + F +ST T+P L+  FTH L        H   LS  V+D  S
Sbjct: 38  SSAASSENPFSFPSSTYTSPTLLTDFTHDLCVPSDDAAHLEWLSRFVDDSFS 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,569,416
Number of Sequences: 219361
Number of extensions: 877128
Number of successful extensions: 2277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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