>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +2

Query: 212 PR*SLTPSPSPQPRRNAQRPAMRGRWSLPRTTRPLLQSQRSGSAEQSPGLTP 367
           P  S +PSPSP PR     P    R   P +  P     +S S  +SP L P
Sbjct: 167 PSPSPSPSPSPSPR---STPIPHPRKRSPASPSPSPSLSKSPSPSESPSLAP 215

>FLIE_SHIBO (P95713) Flagellar hook-basal body complex protein fliE|
          Length = 103

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 133 VSSTAEEQNPQPTVEQFLALHSSLTRATVITDTLTKSAAPPECSAASDAG 282
           +S+ A+E  PQPT+     LH++L R   I+DT T +    E    S+ G
Sbjct: 18  MSARAQESLPQPTISFAGQLHAALDR---ISDTQTAARTQAEKFTLSEPG 64

>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 233 SPSPQPRRNAQRPAMRGRWSLPRTTRPLLQSQRSGSAEQSPGLTPRSP 376
           SPS +PR  +     +   + PR+  P ++S+      +SP + P+SP
Sbjct: 487 SPSVRPRSKSPSVRPKSPSARPRSKSPSVRSKSPSVRPKSPSVRPKSP 534

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 230 PSPSPQPRRNAQRPAMRGRWSLPRTT---RP-LLQSQRSGSAEQSPGLTPRS 373
           P P+P PR  +      GR S  RT+   RP L++S  + S ++ P   P S
Sbjct: 95  PKPTPGPRPGSSSGPKPGRSSAARTSATPRPGLIKSSGASSQQEPPAAKPES 146

>ENL_HUMAN (Q03111) Protein ENL|
          Length = 559

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 230 PSPSPQPRRNAQRPAMRGRWSLPRTTRPLLQSQRSGSAEQSPGLTPRS 373
           P P P PR +++RPA       P+ +    +   S  +  +PG +PR+
Sbjct: 274 PPPPPPPRASSKRPATA---DSPKPSAKKQKKSSSKGSRSAPGTSPRT 318

>DPY7_CAEEL (P34688) Cuticle collagen dpy-7 precursor (Protein dumpy-7)|
          Length = 318

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 141 NGRGAKPAADC*AVPRPPQLAYPCHGDH*HPHQVRSPAG 257
           NGR  KP  D   VP  P+ A+PC      P   R P G
Sbjct: 118 NGRPGKPGLDGLDVPLDPEPAFPCVICPAGPPGTRGPQG 156

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 233 SPSPQPRRNAQRPAMRGRWSLPRTTRPLLQSQRSGS 340
           SP+P PRR    P  R R   PR   P +Q + S S
Sbjct: 591 SPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPS 626

>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich|
           protein) (Nasopharyngeal carcinoma-associated
           proline-rich protein 4)
          Length = 134

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 236 PSPQPRRNAQRPAMRG--RWSLPRTTRPLLQSQRSGSAEQSPGLTPR 370
           P P P +N QRP  RG  + SLPR     LQ   S      P   P+
Sbjct: 83  PPPPPFQNQQRPPQRGHRQLSLPRFPSVSLQEASSFFRRDRPARHPQ 129

>CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin|
           repeat and pleckstrin homology domain-containing protein
           3)
          Length = 1544

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = +2

Query: 221 SLTPSPSPQPRRNAQRPAMR-----GRWSLPRTT-RPLLQSQRSG-SAEQSPGLTPRSP 376
           ++ PSPSP P+    +P  +     G  S P TT RP L     G    +SP  +PR P
Sbjct: 78  AMEPSPSPAPQAQPPKPVPKPRTVFGGLSGPATTQRPGLSPALGGPGVSRSPEPSPRPP 136

>YPE1_RHORU (P23138) Hypothetical 28 kDa protein in petA 5'region|
          Length = 255

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 300 RGRDHRPRIAGR*AFRRGCGLGEGVSDHRGTGKRAVE 190
           R R  RP   G    R  CG+ +G+++H+G G   VE
Sbjct: 136 RYRSDRPSPGG--VLRPACGMAQGLAEHQGGGDGDVE 170


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.125    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,677,051
Number of Sequences: 219361
Number of extensions: 823199
Number of successful extensions: 2494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2490
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)