ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet120g09 |
|---|---|
| Clone Library Name | barley_pub |
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 26.2 bits (56), Expect(2) = 0.28 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = +3 Query: 42 PAFHHPHRHHPSIQSNSFQVQAKP 113 P HP + HP +S+S + A+P Sbjct: 2282 PVSTHPSKSHPFFRSSSLDISAQP 2305 Score = 25.8 bits (55), Expect(2) = 0.28 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +1 Query: 106 PSQPSYGMPSLPPLATAKLPSYPLISLSLAPSI 204 P P P LPP + K P+YP L+ A + Sbjct: 2317 PPPPPPPPPPLPPATSPKPPTYPKRKLAAAAPV 2349
>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) Length = 5085 Score = 25.8 bits (55), Expect(2) = 1.2 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +1 Query: 130 PSLPPLATAKLPSYPLISLSLAPSI 204 P LPP + K P+YP L++A ++ Sbjct: 2371 PPLPPATSPKPPTYPKKKLAVAATV 2395 Score = 23.9 bits (50), Expect(2) = 1.2 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +3 Query: 42 PAFHHPHRHHPSIQSNSFQVQAKPTKLRNALSPSTSHS 155 P HP + P +S+S + A+P PS S S Sbjct: 2328 PVSTHPSKSRPFFRSSSLDISAQPPPPPPPPPPSPSTS 2365
>BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,| chloroplast precursor (BCCP) Length = 280 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = +1 Query: 103 KPSQPSYGMPSLPPLATAKLPSYPLISLSLAPSI*ARPWRMALPPFSS 246 +P+QPSY PP A A P SL P P + +LP S Sbjct: 161 QPNQPSYAQQMAPPAAPAAAAPAPSTPASLPPPSPPTPAKSSLPTVKS 208
>SOS_DROME (P26675) Protein son of sevenless| Length = 1596 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/68 (32%), Positives = 31/68 (45%) Frame = +3 Query: 51 HHPHRHHPSIQSNSFQVQAKPTKLRNALSPSTSHSKAT*LPTDLSLSRSLYISPSMADGS 230 HHPH+HH SN Q ++ P + +TS LP SLS + Y +P Sbjct: 1536 HHPHQHH----SNPTQSRSSP---KEFFPIATSLEGTPKLPPKPSLSANFYNNPDKG--- 1585 Query: 231 PALFILPS 254 +F+ PS Sbjct: 1586 -TMFLYPS 1592
>ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor ATF-6 beta| (Activating transcription factor 6 beta) (ATF6-beta) (cAMP-responsive element-binding protein-like 1) (cAMP response element-binding protein-related protein) (Creb-rp) (Protein G13 Length = 703 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = +1 Query: 106 PSQPSYGM-PSLPPLATAKLPSYPLISLSLAPSI*ARPWRMALPPFSSSHHL--IIRVDR 276 PS+P + + P P L PS P S SL+ + R++ P S + + ++ V Sbjct: 71 PSEPPWELLPIFPDLQVKSEPSSPCSSSSLS----SESSRLSTEPSSEALGVGEVLHVKT 126 Query: 277 DSFCPPACLL 306 +S PP CLL Sbjct: 127 ESLAPPLCLL 136
>CAUP_DROME (P54269) Homeobox protein caupolican| Length = 693 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/72 (23%), Positives = 36/72 (50%) Frame = +3 Query: 51 HHPHRHHPSIQSNSFQVQAKPTKLRNALSPSTSHSKAT*LPTDLSLSRSLYISPSMADGS 230 HHPH HHP +S ++ P + ++ + + +S+ +PT + + +++ S + S Sbjct: 519 HHPHHHHP---HHSMEL-GSPLSMMSSYAGGSPYSR---IPTAYTEAMGMHLPSSSSSSS 571 Query: 231 PALFILPSFDHP 266 + P+ HP Sbjct: 572 STGKLPPTHIHP 583
>APC_MOUSE (Q61315) Adenomatous polyposis coli protein (Protein APC) (mAPC)| Length = 2845 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +1 Query: 100 SKPSQPSYGMPSLPPLATAKLPSYPLISLSLAPSI*ARPWRMALPP 237 S+P P+ P L+ PS P +SLS PS+ A WR LPP Sbjct: 2469 SRPDSPTRSQAQTPVLS----PSLPDMSLSTHPSVQAGGWR-KLPP 2509
>APC_RAT (P70478) Adenomatous polyposis coli protein (Protein APC)| Length = 2842 Score = 30.0 bits (66), Expect = 3.0 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = +1 Query: 100 SKPSQPSYGMPSLPPLATAKLPSYPLISLSLAPSI*ARPWRMALPP 237 S+P P+ P L+ PS P +SLS PS+ A WR LPP Sbjct: 2469 SRPDSPTRSQAQTPVLS----PSLPDMSLSTHPSVQAGGWR-KLPP 2509
>PSBB_ADICA (Q85FJ7) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 508 Score = 29.6 bits (65), Expect = 3.9 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -3 Query: 144 WRERGHSVAWLAWLGLEKSWTGWMDDGD 61 WR+ + ++ +G+ KSW GW+ GD Sbjct: 56 WRQGMFVIPFMTRIGVSKSWGGWIITGD 83
>Y598_TREPA (O83607) Hypothetical protein TP0598| Length = 605 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +3 Query: 33 ACSPAFHHPHRHHPSIQSNSFQVQAKPTKLRNALSPSTSHSKAT*LPTDLSLSRSLYISP 212 A F P R +PS +S ++ ++ NA S SHS+ P + +R+ +SP Sbjct: 17 AAKDVFTEPARFYPSQKSTLESARSDTSESENASSSVPSHSQQELAPDSAAPARNSVLSP 76 Query: 213 S 215 + Sbjct: 77 A 77
>ONEC2_MOUSE (Q6XBJ3) One cut domain family member 2 (Transcription factor| ONECUT-2) (OC-2) Length = 486 Score = 26.2 bits (56), Expect(2) = 4.0 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = +3 Query: 27 VAACSPAFHHPHRHH 71 ++ S FHHPH HH Sbjct: 140 ISTVSDKFHHPHPHH 154 Score = 21.9 bits (45), Expect(2) = 4.0 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +3 Query: 51 HHPHRHHPSIQSNSFQVQAKPTKLRN 128 HH H HH Q S V T +R+ Sbjct: 157 HHHHHHHHHHQRLSGNVSGSFTLMRD 182
>TRY2_MOUSE (P07146) Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin| II) (Pretrypsinogen II) Length = 246 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Frame = -3 Query: 288 AEAIPIDTDDQMMGG*KGRESHPPWTGL------YRGSERERDQWV 169 A A P+D DD+++GG RES P+ + G DQWV Sbjct: 13 AVAFPVDDDDKIVGGYTCRESSVPYQVSLNAGYHFCGGSLINDQWV 58
>PSBB_MESVI (Q9MUV7) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 508 Score = 29.3 bits (64), Expect = 5.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 144 WRERGHSVAWLAWLGLEKSWTGWMDDGD 61 WR+ + ++ LG+ KSW GW +GD Sbjct: 56 WRQGMFVLPFMTRLGISKSWGGWDINGD 83
>DLGP1_RAT (P97836) Disks large-associated protein 1 (DAP-1) (Guanylate| kinase-associated protein) (rGKAP) (SAP90/PSD-95-associated protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1) Length = 992 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 21/69 (30%) Frame = +3 Query: 39 SPAFHHPHRHHPSIQSNSFQVQA---------------------KPTKLRNALSPSTSHS 155 SP HHP H Q NSFQ + + K +AL P T + Sbjct: 35 SPVDHHPADHPYYTQRNSFQAECVGPFSDPLASSTFPRRHYTSQQELKDESALVPRTLAT 94 Query: 156 KAT*LPTDL 182 KA LPT+L Sbjct: 95 KANRLPTNL 103
>DLGP1_MOUSE (Q9D415) Disks large-associated protein 1 (DAP-1) (Guanylate| kinase-associated protein) (SAP90/PSD-95-associated protein 1) (SAPAP1) (PSD-95/SAP90-binding protein 1) Length = 992 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 21/69 (30%) Frame = +3 Query: 39 SPAFHHPHRHHPSIQSNSFQVQA---------------------KPTKLRNALSPSTSHS 155 SP HHP H Q NSFQ + + K +AL P T + Sbjct: 35 SPVDHHPADHPYYTQRNSFQAECVGPFSDPLASSTFPRRHYTSQQELKDESALVPRTLAT 94 Query: 156 KAT*LPTDL 182 KA LPT+L Sbjct: 95 KANRLPTNL 103
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 28.9 bits (63), Expect = 6.7 Identities = 9/16 (56%), Positives = 10/16 (62%) Frame = +3 Query: 42 PAFHHPHRHHPSIQSN 89 P HHPH+HHP N Sbjct: 102 PGSHHPHQHHPHFGGN 117
>KRUH_DROME (P08155) Krueppel homologous protein 1| Length = 845 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +1 Query: 103 KPSQPSYGMPSLPPLATAKLP-SYPLISLSLAPSI*ARPWRMALPPFSSSHHLIIRVDRD 279 KP Q S AT +P S PL SL+ + MA PP +S+H+L ++++ D Sbjct: 517 KPRQARQPRVSKTVAATLSIPTSSPLSPSSLSSTYSPSASSMASPPPTSAHYLPVQMEAD 576 Query: 280 S 282 + Sbjct: 577 A 577
>NR4A3_HUMAN (Q92570) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor| NOR-1) (Neuron-derived orphan receptor 1) (Mitogen-induced nuclear orphan receptor) Length = 626 Score = 24.3 bits (51), Expect(2) = 8.3 Identities = 8/26 (30%), Positives = 14/26 (53%) Frame = +3 Query: 39 SPAFHHPHRHHPSIQSNSFQVQAKPT 116 +P++HH H HH + Q +P+ Sbjct: 91 APSYHHHHHHHHHHHHHHQQQHQQPS 116 Score = 22.7 bits (47), Expect(2) = 8.3 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = +1 Query: 112 QPSYGMPSLPPLATAKLPSYPLISLSLAPSI*ARPWRMALPP 237 Q + PS+PP ++ + P S+ S + P A PP Sbjct: 109 QQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPP 150
>TFR1_RAT (Q99376) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)| (Fragment) Length = 622 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 106 PSQPSYGMPSLPPLATAKLPSYPLISLSLAPS 201 P PS+ PP ++ LPS P+ ++S AP+ Sbjct: 173 PGFPSFNHTQFPPSQSSGLPSIPVQTISRAPA 204
>PRZ1_SCHPO (Q09838) Transcriptional regulator prz1 (Pbp1-responsive zinc| finger protein 1) Length = 681 Score = 28.5 bits (62), Expect = 8.7 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%) Frame = +3 Query: 39 SPAFHHPHRHHPSIQSNSFQV----QAKPTKLRNALSP-STSHSKAT*L--------PTD 179 SP+ H+ P + NS + A+ + +R+ SP S H+ A+ PT Sbjct: 334 SPSAEFSHQSSPYLVPNSGRTLNSENARESTIRSVNSPFSEDHADASLTTHVFDPISPTA 393 Query: 180 LSLSRSLYISPSMADGSPALFILPSFDHPCRSG*LLPAS 296 LS S Y S + + G+P + ++PS +SG LPA+ Sbjct: 394 LSNSVLNYDSNNFS-GTPQINVVPSSPSKSQSGPSLPAN 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,729,279 Number of Sequences: 219361 Number of extensions: 1193484 Number of successful extensions: 3618 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3329 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3599 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
