>MURC_DEIRA (Q9RWN9) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 482

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 25/96 (26%), Positives = 37/96 (38%)
 Frame = +3

Query: 66  SSPLASTAKSSPRTPHRQQTMAACNGLFVYHILGLASLVAVFYFSLLGEVDLRFPGAGMG 245
           S+PL + A SSP  P  Q ++        YH+LG+  +    +  LL     R  G    
Sbjct: 9   SAPLPTPAPSSPAQPSAQPSLH-------YHLLGIGGIGMSAFARLLATRGHRVSGCDQN 61

Query: 246 LTVCRTWAFNDGAYNALQLSPGHFDERVFRALDMVV 353
           L          G   A   +  H  E  F  +D++V
Sbjct: 62  LGAQTAGLEAQGIPVAAGHAAAHVTEEPFGKIDVLV 97

>MLTC_YERPS (Q666M2) Membrane-bound lytic murein transglycosylase C precursor|
           (EC 3.2.1.-) (Murein hydrolase C)
          Length = 358

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 258 RTWAFNDGAYNALQLSPGHFDERVFRALDMVVVEARRHGVRLVLSLA 398
           RT   +  ++  +QL P H D+R  + L +V   A R+GV   L LA
Sbjct: 165 RTSGLHVISFVTIQLVPNHLDKRAHKYLPLVRKSAARYGVEESLILA 211

>MLTC_YERPE (Q8ZHE6) Membrane-bound lytic murein transglycosylase C precursor|
           (EC 3.2.1.-) (Murein hydrolase C)
          Length = 358

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 258 RTWAFNDGAYNALQLSPGHFDERVFRALDMVVVEARRHGVRLVLSLA 398
           RT   +  ++  +QL P H D+R  + L +V   A R+GV   L LA
Sbjct: 165 RTSGLHVISFVTIQLVPNHLDKRAHKYLPLVRKSAARYGVEESLILA 211

>DBH2_STRLI (P0A3H8) DNA-binding protein HU 2|
          Length = 218

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 367 RRASTTTMSSARKTRSSKCPGESWSAL*APSLKAQVRHT 251
           + A+ TT ++A+KT + K P +  +A  AP+ K+  R T
Sbjct: 170 KSAAKTTTAAAKKTAAKKAPAKKATAKKAPAKKSTARKT 208

>DBH2_STRCO (P0A3H7) DNA-binding protein HU 2|
          Length = 218

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 367 RRASTTTMSSARKTRSSKCPGESWSAL*APSLKAQVRHT 251
           + A+ TT ++A+KT + K P +  +A  AP+ K+  R T
Sbjct: 170 KSAAKTTTAAAKKTAAKKAPAKKATAKKAPAKKSTARKT 208

>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 283 APSLKAQVRHTVRPIPAPGKRRSTSPRR 200
           AP+ K+   H  RP  +  +RRS SPRR
Sbjct: 258 APARKSATTHETRPSASRSRRRSPSPRR 285

>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16|
          Length = 326

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 389 EDEPHAVPPGLHDDHVQRPEDALVEVPRGELER 291
           E+ P ++P G  DD V+  +   V+ P+ +LER
Sbjct: 197 ENRPESLPEGFFDDPVRDAQVRQVDTPKDQLER 229

>EBAG_STRPL (P04067) Endo-beta-N-acetylglucosaminidase H precursor (EC|
           3.2.1.96) (Mannosyl-glycoprotein
           endo-beta-N-acetyl-glucosaminidase H)
           (DI-N-acetylchitobiosyl beta-N-acetylglucosaminidase H)
           (Endoglycosidase H) (Endo H)
          Length = 313

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 231 GAGMGLTVCRTWAFNDGAYNALQLSPGHFDERVFRALDMVVVEAR---RHGVRLVLSLAN 401
           G G    V   +A N       + +  HF+E V R LD  V + R   + G++++LS+  
Sbjct: 75  GGGNAFDVAVIFAANINYDTGTKTAYLHFNENVQRVLDNAVTQIRPLQQQGIKVLLSVLG 134

Query: 402 NLEAYG 419
           N +  G
Sbjct: 135 NHQGAG 140

>DBP9_CRYNE (Q5K7L2) ATP-dependent RNA helicase DBP9 (EC 3.6.1.-)|
          Length = 627

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 283 APSLKAQVRHTVRPIPAPGKRRSTSPRREK*NTATREARP 164
           A   + + +   +P P P KRR+TSP   K N   R A P
Sbjct: 366 AEDKEKEAKEEAKPAPGPSKRRATSP-PSKPNKRARRADP 404

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
 Frame = -2

Query: 367 RRASTTTMSSARKTRSSKCPGESWSAL*APSLKAQVRHT--------------VRPIPAP 230
           RR STT+ S++  + S+   G  W++          R T                P P  
Sbjct: 158 RRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPRATPPTWQRSTSMPPSRASPWPRY 217

Query: 229 GKRRSTSPRREK*NTATREARPRMWYTNSPLHAA 128
           G+R  T+    +  T TR    R W T S + AA
Sbjct: 218 GRRWRTAGTASR--TTTRTRTGRSWSTGSIVSAA 249

>T1S_SALPO (P07990) Type I restriction enzyme StySPI specificity protein (S|
           protein) (S.StySPI)
          Length = 463

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 128 HCLLPVRCSWGAFCGA 81
           H  LP  CS+GAFCGA
Sbjct: 95  HQRLPFECSFGAFCGA 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,871,089
Number of Sequences: 219361
Number of extensions: 938245
Number of successful extensions: 3210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3208
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)