>FAAA_RAT (P25093) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate|
           hydrolase) (Beta-diketonase) (FAA)
          Length = 419

 Score =  100 bits (249), Expect = 2e-21
 Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
 Frame = +3

Query: 120 SFVEVPRDSHFPIQNLPFGVFRRRGQPEDPPRPATAIGDFALDLAAVSAAGLFDGPLLSA 299
           SF+ V  DS FPIQNLP+GVF  +  P+  PR   AIGD  LDL+ +    LF GP+LS 
Sbjct: 2   SFIPVAEDSDFPIQNLPYGVFSTQSNPK--PRIGVAIGDQILDLSVIKH--LFTGPVLSK 57

Query: 300 SP-CFRQETLNMFLGLGRPAWKEARATLQKILSADEPVLRDNEALRK 437
               F + TLN F+GLG+ AWKEARA+LQ +LSA +  LRD++ LR+
Sbjct: 58  HQHVFDETTLNSFMGLGQAAWKEARASLQNLLSASQAQLRDDKELRQ 104

>FAAA_HUMAN (P16930) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate|
           hydrolase) (Beta-diketonase) (FAA)
          Length = 419

 Score =  100 bits (248), Expect = 2e-21
 Identities = 57/107 (53%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = +3

Query: 120 SFVEVPRDSHFPIQNLPFGVFRRRGQPEDPPRPATAIGDFALDLAAVSAAGLFDGPLLSA 299
           SF+ V  DS FPI NLP+GVF  RG P   PR   AIGD  LDL+ +    LF GP+LS 
Sbjct: 2   SFIPVAEDSDFPIHNLPYGVFSTRGDPR--PRIGVAIGDQILDLSIIKH--LFTGPVLSK 57

Query: 300 -SPCFRQETLNMFLGLGRPAWKEARATLQKILSADEPVLRDNEALRK 437
               F Q TLN F+GLG+ AWKEAR  LQ +LS  +  LRD+  LRK
Sbjct: 58  HQDVFNQPTLNSFMGLGQAAWKEARVFLQNLLSVSQARLRDDTELRK 104

>FAAA_MOUSE (P35505) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate|
           hydrolase) (Beta-diketonase) (FAA)
          Length = 419

 Score = 99.0 bits (245), Expect = 6e-21
 Identities = 56/107 (52%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
 Frame = +3

Query: 120 SFVEVPRDSHFPIQNLPFGVFRRRGQPEDPPRPATAIGDFALDLAAVSAAGLFDGPLLSA 299
           SF+ V  DS FPIQNLP+GVF  +  P+  PR   AIGD  LDL+ +    LF GP LS 
Sbjct: 2   SFIPVAEDSDFPIQNLPYGVFSTQSNPK--PRIGVAIGDQILDLSVIKH--LFTGPALSK 57

Query: 300 SP-CFRQETLNMFLGLGRPAWKEARATLQKILSADEPVLRDNEALRK 437
               F + TLN F+GLG+ AWKEARA+LQ +LSA +  LRD++ LR+
Sbjct: 58  HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQ 104

>FAAA_EMENI (Q00770) Fumarylacetoacetase (EC 3.7.1.2) (Fumarylacetoacetate|
           hydrolase) (Beta-diketonase) (FAA)
          Length = 431

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
 Frame = +3

Query: 114 LRSFVEVPRDSHFPIQNLPFGVFRRRGQPEDPPRPATAIGDFALDLAAVSAAGLFDG-PL 290
           + S++++P++S F + N+PFG+            PA AIGD+ALDL+  +++G F   P+
Sbjct: 1   MASWLQIPKNSPFSLANIPFGIIS--SSKLSSRVPAIAIGDYALDLSKFASSGGFSQLPV 58

Query: 291 LSAS-PCFRQETLNMFLGLGRPAWKEARATLQKILSADEP---VLRDNEALRKNCLVP 452
           +      F++ TLN F  LGRP  ++ R  +QK+ S + P   +LRDN AL+K  L+P
Sbjct: 59  IQPHLNVFKESTLNAFAALGRPVHRQVREYIQKVFSTETPFPQILRDNAALQKEALLP 116

>KUP_AZOSE (Q5P3E3) Probable potassium transport system protein kup|
          Length = 640

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = +3

Query: 132 VPRDSHFPIQNLPFGVFRRR---GQPEDPPRPATAI--GDFALDLAAVSAAGLFDGPLLS 296
           VP      ++ L +G +R R   G  +DP  PA  +   DF L  A           ++ 
Sbjct: 536 VPDSERVAVEELDYGFYRVRVNYGFKDDPDLPAALVRCADFGLKFA-----------MME 584

Query: 297 ASPCFRQETLNMFLGLGRPAWKE 365
            S    +ETL   +G G P W+E
Sbjct: 585 TSFFLGRETLVSRVGSGMPRWRE 607

>FOXL1_HUMAN (Q12952) Forkhead box protein L1 (Forkhead-related protein FKHL11)|
           (Forkhead-related transcription factor 7) (FREAC-7)
          Length = 345

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -1

Query: 319 SWRKHGEAERRGP----SKRPAAETAARSSAKSPMAVAGRGGS 203
           ++R+     + GP    +KRP AET  RS+   P A +G GGS
Sbjct: 137 NYRRRKRKPKPGPGAPEAKRPRAETHQRSAEAQPEAGSGAGGS 179

>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
            homolog)
          Length = 1111

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 25/85 (29%), Positives = 34/85 (40%)
 Frame = -1

Query: 457  THGTRQFFLKASLSRNTGSSAERIFWSVARASFHAGRPNPKNMLSVSWRKHGEAERRGPS 278
            +H T Q  LKA L  N   S + + W         G PN +          G    + P+
Sbjct: 889  SHSTGQ--LKAQLVCNYVQSQQELLWEGRN---RGGLPNQELPYQSPKFLGGSQVSQSPA 943

Query: 277  KRPAAETAARSSAKSPMAVAGRGGS 203
            K PAA  AA  S  +P +   + GS
Sbjct: 944  KTPAAAAAAYGSGFAPASANHKSGS 968

>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2B)
          Length = 1086

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 403 SSAERIFWSVARASFHAGRPNPKNMLSVS--WRKHGEAERRGPSKRPAAETAARSS 242
           SS E   WS +R S  A     +  +  S  WRK  E  RR P++RP   +  R S
Sbjct: 351 SSPELSSWSASRTSIKAKLLRRQISVKESRPWRKAEEERRREPTRRPGPASHRRRS 406

>AF17_HUMAN (P55198) Protein AF-17|
          Length = 1093

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 271 PAAETAARSSAKSPMAVAGRGGSSGWPLRRKTPKGRFWMGKCESLGTSTND 119
           PAA  AA      P  +  + GSS      K+P G+  +G   SL TS+ D
Sbjct: 765 PAALPAANGPVPGPYGLPPQAGSSDSLSTSKSPPGKSSLGLDNSLSTSSED 815

>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin|
           cytoplasmic domain-associated protein 3) (SEMACAP3
           protein)
          Length = 1063

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -1

Query: 373 ARASFHAGRPNPKNMLSVSWRKHGEAERRGPSKRPAAETAARSSAKSPMAVAGRGGSSGW 194
           A A+  A RP+PKN+L+++     + E   PS  P+A+    S A   + +  R GS G 
Sbjct: 791 ATANIEAYRPSPKNLLAIT----EDPEVSTPSYNPSAKELDPSQA---LEIKERRGSDGS 843

Query: 193 PLRRKTPK 170
                +PK
Sbjct: 844 RSPTASPK 851

>H5_CAIMO (P06513) Histone H5|
          Length = 193

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -1

Query: 373 ARASFHAGRPNPKNMLSVSWRKHGEAERRGPSKRPAAETA-ARSSAKSPMAVA--GRGGS 203
           A  S+   + +         +K  +A RR  S R AA    ARS AK P A A   R  S
Sbjct: 90  ASGSYRLAKGDKAKKSPAGRKKKKKAARRSTSPRKAARPRKARSPAKKPKAAARKARKKS 149

Query: 202 SGWPLRRKTPKGRFWMGKCESLGTS 128
              P + K PK      K +SL TS
Sbjct: 150 RASPKKAKKPK----TVKAKSLKTS 170

>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2|
          Length = 916

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -1

Query: 355 AGRPNPKNMLSVSWRKHGEAERRGPSKRPAAETAARSSAKSPMAVAGRGGSSGWPLRRKT 176
           +G P P+  +SV+ R+   A  +  S++ AAE  A S A      AG    +  P     
Sbjct: 91  SGAPKPQAPMSVAERQ--AAAEKAASEKAAAEKVAASEAADAKPAAGAPADTAKPSSPPR 148

Query: 175 PKG 167
           P G
Sbjct: 149 PSG 151

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 295 ERRGPSKRPAAETAARSSA--KSPMAVAGRGGSSGWPLR 185
           +RRG    PAA ++A SSA  +SP+A  G G     P R
Sbjct: 514 KRRGSDSGPAASSSASSSAAPRSPLAPQGVGAKRAAPRR 552

>VP19_HHV2H (P89461) Capsid assembly and DNA maturation protein (Capsid protein|
           VP19C)
          Length = 466

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 474 RSISTSLMAQGSSSSRPRCHATPAHQLRGFSGAWRAPPSTPAGPTPRTC 328
           R++   L    +SS  PRC A+     +     +R  P     PT RTC
Sbjct: 369 RNVDFPLAVPAASSQSPRCSASQVTNPQFVDRLYRWQPDLRGRPTARTC 417

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 189 RGQPEDPPRPATAIGDFALDLAAVSAAGLFDGPLLSA-SPCFRQETLNMFLGLGRPAWKE 365
           R +P+ PP+P TAI +   DL ++S       P+ SA    FR +TL     +G  A+  
Sbjct: 259 RKKPQQPPKPQTAIDE---DLRSISLTK--KPPVPSAQDQDFRPKTLKPTSVIGSHAFAP 313

Query: 366 ARATLQKILSADEPV 410
             A ++ ++    PV
Sbjct: 314 VAAPIRPMIPVPPPV 328

>COTE1_HUMAN (P81408) COTE1 protein|
          Length = 669

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 185 AEDPEGEVLDGEVRVPRHLHERP--QELRLRHCCSVSLSLS 69
           A DP G    G  +VPR L  RP  + L LR C  +S S S
Sbjct: 599 APDPSGTGAHGHKQVPRSLWGRPGRESLHLRSCGDLSSSSS 639

>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 744

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = -1

Query: 319 SWRKHGEAERRGPSKRPAAETAARSSAKSPMAVAGRGGSSG---WPLRRKTPKGRFWMGK 149
           +WRKH      G S+RP    A      SP   A  G S+G   W      P    W+  
Sbjct: 125 TWRKHSRHPSGGNSERP---LAGPGPFWSPFGEAQSGSSAGDAVWSGHSPPPPQENWVSF 181

Query: 148 CESLGTST 125
            ++  TST
Sbjct: 182 ADTPPTST 189

>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)|
           (NFI-X) (NF-I/X) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 502

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 11  PYGFYCALRPNNHEAHDARKRERERRCSNGGGEAPAVVRGGAEG 142
           PY  +  +R ++H   D+ K   +  CS+G G+A     G  +G
Sbjct: 382 PYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQPNGSGQG 425

>NFIX_MOUSE (P70257) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)|
           (NFI-X) (NF-I/X) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 488

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 11  PYGFYCALRPNNHEAHDARKRERERRCSNGGGEAPAVVRGGAEG 142
           PY  +  +R ++H   D+ K   +  CS+G G+A     G  +G
Sbjct: 382 PYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQPNGSGQG 425

>VP19_HHV2G (P22486) Capsid assembly and DNA maturation protein (Capsid protein|
           VP19C)
          Length = 466

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 474 RSISTSLMAQGSSSSRPRCHATPAHQLRGFSGAWRAPPSTPAGPTPRTC 328
           R++   L    +SS  PRC A+     +     +R  P     PT RTC
Sbjct: 369 RNVDFPLAVLAASSQSPRCSASQVTNPQFVDRLYRWQPDLRGRPTARTC 417

>SIF2_DROME (P91620) Protein still life, isoforms C/SIF type 2|
          Length = 2061

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 471 SISTSLMAQGSSSSRPRCHATPAHQLRGFSGAWRAPPSTPAGPTPRT 331
           S+S+  +A+    ++ + HA PAH +          PST A P P T
Sbjct: 425 SVSSVNLARHQQLAQVQLHAVPAHLVGAMGSDVPTTPSTTATPPPPT 471

>H5_ANSAN (P02258) Histone H5|
          Length = 193

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -1

Query: 373 ARASFHAGRPNPKNMLSVSWRKHGEAERRGPSKRPAAETA-ARSSAKSPMAVA--GRGGS 203
           A  SF   + +         +K  +A R+  S + AA    ARS AK P A A   R  S
Sbjct: 90  ASGSFRLAKGDKAKRSPAGRKKKKKAARKSTSPKKAARPRKARSPAKKPKAAARKARKKS 149

Query: 202 SGWPLRRKTPKGRFWMGKCESLGTS 128
              P + K PK      K +SL TS
Sbjct: 150 RASPKKAKKPK----TVKAKSLKTS 170

>H1C8_TRYCR (P40270) Histone H1.C8/H1.M1|
          Length = 74

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -1

Query: 310 KHGEAERRGPSKRPAAETAARSSAKSPM----AVAGRGGSSGWPLRRKTPK 170
           K   A++  P K  A +TAA+ +AK P     A   R      P  +K PK
Sbjct: 14  KKAAAKKASPKKAAARKTAAKKTAKKPAVRKPAAKKRAAPKKKPAAKKAPK 64

>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5038

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 280  SKRPAAETAARSSAKSPMAVAGRGGSSGWPL 188
            S  P  E     SA   ++ AG GGSSGW L
Sbjct: 4584 SDSPPGEDDMEGSAAGDVSGAGSGGSSGWGL 4614

>CHEB1_VIBPA (Q87MK5) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 369

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 298 AERRGPSKRPAAETAARSSAKSPMAVAGRGGSSGWPLRRKTPKGRFWMGKCE--SLGTST 125
           A +R   +RP A  AA +S+  P+A      ++  P R  T K R    K +  ++GTST
Sbjct: 130 ASKRAFMRRPVARPAAATSSARPLASRTAAPAASAPARPATTKFRASGKKYQLTAIGTST 189

>HGFA_MOUSE (Q9R098) Hepatocyte growth factor activator precursor (EC 3.4.21.-)|
           (HGF activator) (HGFA) [Contains: Hepatocyte growth
           factor activator short chain; Hepatocyte growth factor
           activator long chain]
          Length = 653

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   IPYGFYCALRPNNHEAHDARKRERERRCS 94
           +PY  Y    PNNH+    R +++  RC+
Sbjct: 481 VPYTLYSVFNPNNHDLVLIRLKKKGERCA 509


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,251,555
Number of Sequences: 219361
Number of extensions: 996280
Number of successful extensions: 4770
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4756
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)