>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 65  gcaatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctcg 124
           |||||||||||||| ||| |||||||||||||||| || |||||||||| ||||||||||
Sbjct: 33  gcaatggagtccaccaagctctccgcgctgctggtgctcgccatgctcgcgctctcctcg 92

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                          
Query: 66       caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
                ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 32828010 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 32827953

>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 66  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 66  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 59  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 116

>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 66  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 55  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 112

>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 66  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 63  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 120

>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 66  caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
           ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 61  caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 118

>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 66    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 23245 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 23188

>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 66    caatggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
             ||||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 90297 caatggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 90240

>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 68  atggagtccacgaaggtctccgcgctgctggttctggccatgctcgtgctctcctc 123
           ||||||||||| |||||||| ||| ||||  | || |||||||||| |||||||||
Sbjct: 1   atggagtccaccaaggtctcggcgatgctcctgctcgccatgctcgcgctctcctc 56

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 169     tggcacgccgtcgagcggcacgccctcgg 197
               ||||| ||||||||||||| |||||||||
Sbjct: 1763519 tggcaggccgtcgagcggcgcgccctcgg 1763491

>emb|CR522871.1| Desulfotalea psychrophila LSv54, large plasmid
          Length = 121587

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 93     tgctggttctggccatgctcg 113
              |||||||||||||||||||||
Sbjct: 104132 tgctggttctggccatgctcg 104112

>gb|DQ397621.1| Cenarchaeum symbiosum clone C21E11, complete sequence
          Length = 41700

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    gtggttgctgcaatggagtcc 76
             |||||||||||||||||||||
Sbjct: 13074 gtggttgctgcaatggagtcc 13094

>gb|U31090.1|RSU31090 Rhodobacter sphaeroides FliH (fliH) gene, partial cds, FliI (fliI)
           and FliJ (fliJ) genes, complete cds
          Length = 2190

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 169 tggcacgccgtcgagcggcacgccctcgg 197
           ||||| ||||||||||||| |||||||||
Sbjct: 806 tggcaggccgtcgagcggcgcgccctcgg 778

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     gccgtcgagcggcacgccct 194
               ||||||||||||||||||||
Sbjct: 2793585 gccgtcgagcggcacgccct 2793604

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     cctcgggcggcggcatcagc 211
               ||||||||||||||||||||
Sbjct: 1928034 cctcgggcggcggcatcagc 1928015

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    cccggtcatcggcgtcgtcg 236
              ||||||||||||||||||||
Sbjct: 625982 cccggtcatcggcgtcgtcg 626001

>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     gccgtcgagcggcacgccct 194
               ||||||||||||||||||||
Sbjct: 4021080 gccgtcgagcggcacgccct 4021099

>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    ctccggtcatcggcgtcgtc 268
              ||||||||||||||||||||
Sbjct: 101127 ctccggtcatcggcgtcgtc 101108

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 251     ccggtcatcggcgtcgtcgg 270
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     ccggtcatcggcgtcgtcgg 237
               ||||||||||||||||||||
Sbjct: 3541023 ccggtcatcggcgtcgtcgg 3541042

>emb|X97201.1|RSFLIIGEN R.sphaeroides fliI gene
          Length = 1341

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 170 ggcacgccgtcgagcggcacgccctcgg 197
           |||| ||||||||||||| |||||||||
Sbjct: 365 ggcaggccgtcgagcggcgcgccctcgg 338

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     gccgtcgagcggcacgccct 194
               ||||||||||||||||||||
Sbjct: 3727689 gccgtcgagcggcacgccct 3727708

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 249      ctccggtcatcggcgtcgtc 268
                ||||||||||||||||||||
Sbjct: 22841410 ctccggtcatcggcgtcgtc 22841391

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     cacgccctcgggcggcggca 206
               ||||||||||||||||||||
Sbjct: 7955812 cacgccctcgggcggcggca 7955831

>dbj|AK062389.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-C07, full
           insert sequence
          Length = 745

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 226 cggcgtcgtcggtggcaccgtcactccg 253
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 259 cggcgtcgtcggtggcaccgtcactccg 286
           |||||||| ||| |||||||||||||||
Sbjct: 427 cggcgtcgacggcggcaccgtcactccg 400

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     gccgtcgagcggcacgccct 194
               ||||||||||||||||||||
Sbjct: 3420385 gccgtcgagcggcacgccct 3420404

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 249      ctccggtcatcggcgtcgtc 268
                ||||||||||||||||||||
Sbjct: 23151320 ctccggtcatcggcgtcgtc 23151301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,781,101
Number of Sequences: 3902068
Number of extensions: 1781101
Number of successful extensions: 45278
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44336
Number of HSP's gapped (non-prelim): 942
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)