ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet11f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197543.1| Oryza sativa (japonica cultivar-group) hypothet... 105 9e-20
2dbj|AK066849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 9e-20
3dbj|AK103995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
4gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno... 58 2e-05
5gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 58 2e-05
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
8ref|XM_846773.1| PREDICTED: Canis familiaris similar to alanine ... 46 0.071
9gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.1
10emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 4.4
11emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 4.4
12emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 4.4
13gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequ... 40 4.4
14gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.4
15gb|AC091865.3| Homo sapiens chromosome 5 clone CTD-2354N18, comp... 40 4.4
16gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 4.4
17gb|AC026722.4|AC026722 Homo sapiens chromosome 5 clone CTD-2203N... 40 4.4
18gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 4.4 
>ref|NM_197543.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0060I05.14), mRNA
          Length = 519

 Score =  105 bits (53), Expect = 9e-20
 Identities = 168/205 (81%), Gaps = 6/205 (2%)
 Strand = Plus / Plus

                                                                       
Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
           |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||||
Sbjct: 81  gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 140

                                                                       
Query: 185 cggccaaccccgcgttgcctccttctgcaaaaggctcgcgaggaacgtggtgtcaatggc 244
           |||||| ||||| || || ||||||||||| ||||| ||||||||||||||| | |||||
Sbjct: 141 cggccagccccgtgtcgcgtccttctgcaagaggctggcgaggaacgtggtggccatggc 200

                                                                       
Query: 245 cgccagtga---gccggcggcgccgctggccgaaaacgccgagcttaccgagttgtttaa 301
            ||  | ||   ||||||||||||||| ||||  ||||| ||| | ||||||||  | ||
Sbjct: 201 ggcgggggaggcgccggcggcgccgctcgccgccaacgcggagatcaccgagttcatcaa 260

                                    
Query: 302 ctccttgaaacaagagtgggacagg 326
           | || | ||||||||||||||||||
Sbjct: 261 cgccctcaaacaagagtgggacagg 285
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>dbj|AK066849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075C23, full
           insert sequence
          Length = 779

 Score =  105 bits (53), Expect = 9e-20
 Identities = 168/205 (81%), Gaps = 6/205 (2%)
 Strand = Plus / Plus

                                                                       
Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
           |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||||
Sbjct: 159 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 218

                                                                       
Query: 185 cggccaaccccgcgttgcctccttctgcaaaaggctcgcgaggaacgtggtgtcaatggc 244
           |||||| ||||| || || ||||||||||| ||||| ||||||||||||||| | |||||
Sbjct: 219 cggccagccccgtgtcgcgtccttctgcaagaggctggcgaggaacgtggtggccatggc 278

                                                                       
Query: 245 cgccagtga---gccggcggcgccgctggccgaaaacgccgagcttaccgagttgtttaa 301
            ||  | ||   ||||||||||||||| ||||  ||||| ||| | ||||||||  | ||
Sbjct: 279 ggcgggggaggcgccggcggcgccgctcgccgccaacgcggagatcaccgagttcatcaa 338

                                    
Query: 302 ctccttgaaacaagagtgggacagg 326
           | || | ||||||||||||||||||
Sbjct: 339 cgccctcaaacaagagtgggacagg 363
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>dbj|AK103995.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F12, full
           insert sequence
          Length = 758

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 167/205 (81%), Gaps = 6/205 (2%)
 Strand = Plus / Plus

                                                                       
Query: 128 gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
           |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||| 
Sbjct: 155 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctcccg 214

                                                                       
Query: 185 cggccaaccccgcgttgcctccttctgcaaaaggctcgcgaggaacgtggtgtcaatggc 244
           |||||| ||||| || || ||||||||||| ||||| ||||||||||||||| | |||||
Sbjct: 215 cggccagccccgtgtcgcgtccttctgcaagaggctggcgaggaacgtggtggccatggc 274

                                                                       
Query: 245 cgccagtga---gccggcggcgccgctggccgaaaacgccgagcttaccgagttgtttaa 301
            ||  | ||   ||||||||||||||| ||||  ||||| ||| | ||||||||  | ||
Sbjct: 275 ggcgggggaggcgccggcggcgccgctcgccgccaacgcggagatcaccgagttcatcaa 334

                                    
Query: 302 ctccttgaaacaagagtgggacagg 326
           | || | ||||||||||||||||||
Sbjct: 335 cgccctcaaacaagagtgggacagg 359
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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/87 (83%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                         
Query: 128   gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
             |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||||
Sbjct: 90168 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 90227

                                        
Query: 185   cggccaaccccgcgttgcctccttctg 211
             |||||| ||||| || || ||||||||
Sbjct: 90228 cggccagccccgtgtcgcgtccttctg 90254
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/87 (83%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                         
Query: 128   gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
             |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||||
Sbjct: 14814 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 14873

                                        
Query: 185   cggccaaccccgcgttgcctccttctg 211
             |||||| ||||| || || ||||||||
Sbjct: 14874 cggccagccccgtgtcgcgtccttctg 14900
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/87 (83%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                            
Query: 128      gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
                |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||||
Sbjct: 20374666 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 20374725

                                           
Query: 185      cggccaaccccgcgttgcctccttctg 211
                |||||| ||||| || || ||||||||
Sbjct: 20374726 cggccagccccgtgtcgcgtccttctg 20374752
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 73/87 (83%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                            
Query: 128      gcgctccgccggccccgggctccccgcgcttccgtcgct---gcccggcctcgcgtccca 184
                |||||||| ||||| ||| ||||||||||||||| |  |   |||||||||||| |||||
Sbjct: 20385938 gcgctccgtcggcctcggcctccccgcgcttccgccattattgcccggcctcgcctccca 20385997

                                           
Query: 185      cggccaaccccgcgttgcctccttctg 211
                |||||| ||||| || || ||||||||
Sbjct: 20385998 cggccagccccgtgtcgcgtccttctg 20386024
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>ref|XM_846773.1| PREDICTED: Canis familiaris similar to alanine aminotransferase 2
            (LOC609510), mRNA
          Length = 1125

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 138  ggccccgggctccccgcgcttcc 160
            |||||||||||||||||||||||
Sbjct: 1065 ggccccgggctccccgcgcttcc 1087
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 242     ggccgccagtgagccggcggcgccg 266
               ||||||||||||||||| |||||||
Sbjct: 3376363 ggccgccagtgagccggtggcgccg 3376387
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    ggcgccgctggccgaaaacg 279
              ||||||||||||||||||||
Sbjct: 121673 ggcgccgctggccgaaaacg 121654
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   ggcgccgctggccgaaaacg 279
             ||||||||||||||||||||
Sbjct: 44733 ggcgccgctggccgaaaacg 44714
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    ggcgccgctggccgaaaacg 279
              ||||||||||||||||||||
Sbjct: 184708 ggcgccgctggccgaaaacg 184727
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>gb|CP000135.1| Rhizobium etli CFN 42 plasmid p42b, complete sequence
          Length = 184338

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cgaaggcatcgatctccatg 56
             ||||||||||||||||||||
Sbjct: 38540 cgaaggcatcgatctccatg 38559
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     agccggcggcgccgctggcc 272
               ||||||||||||||||||||
Sbjct: 5052673 agccggcggcgccgctggcc 5052692
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>gb|AC091865.3| Homo sapiens chromosome 5 clone CTD-2354N18, complete sequence
          Length = 87256

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagtggtggtggtggcgaga 25
             ||||||||||||||||||||
Sbjct: 36789 aagtggtggtggtggcgaga 36770
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
               complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     cggcctcgcgtcccacggcc 189
               ||||||||||||||||||||
Sbjct: 1071006 cggcctcgcgtcccacggcc 1071025
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>gb|AC026722.4|AC026722 Homo sapiens chromosome 5 clone CTD-2203N22, complete sequence
          Length = 150162

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagtggtggtggtggcgaga 25
             ||||||||||||||||||||
Sbjct: 75964 aagtggtggtggtggcgaga 75945
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 122     ggccgcgcgctccgccggccccgg 145
               ||||||||||||||||||| ||||
Sbjct: 1958156 ggccgcgcgctccgccggcaccgg 1958133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,269,997
Number of Sequences: 3902068
Number of extensions: 2269997
Number of successful extensions: 61061
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60804
Number of HSP's gapped (non-prelim): 257
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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