Clone Information

BLAST Search Result

Clone Name	baet11f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HA11_RAT (P15978) Class I histocompatibility antigen, Non-RT1.A ...	34	0.097
2	TAR1_KLULA (Q6CQE5) Protein TAR1	33	0.17
3	TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to riboso...	33	0.17
4	HA12_RAT (P16391) RT1 class I histocompatibility antigen, AA alp...	32	0.28
5	HA1A_BOVIN (P13752) BOLA class I histocompatibility antigen, alp...	32	0.48
6	HA18_MOUSE (P14430) H-2 class I histocompatibility antigen, Q8 a...	31	0.63
7	HA1Z_MOUSE (P01896) H-2 class I histocompatibility antigen, alph...	31	0.82
8	HA1L_MOUSE (P01897) H-2 class I histocompatibility antigen, L-D ...	31	0.82
9	HA11_MOUSE (P01899) H-2 class I histocompatibility antigen, D-B ...	31	0.82
10	HA10_MOUSE (P01898) H-2 class I histocompatibility antigen, Q10 ...	31	0.82
11	HA15_MOUSE (P06339) H-2 class I histocompatibility antigen, D-37...	30	1.1
12	HA1D_MOUSE (P01902) H-2 class I histocompatibility antigen, K-D ...	30	1.1
13	HA19_CANFA (P18466) DLA class I histocompatibility antigen, A9/A...	30	1.1
14	HA14_MOUSE (P14427) H-2 class I histocompatibility antigen, D-P ...	30	1.4
15	ZP2_MOUSE (P20239) Zona pellucida sperm-binding protein 2 precur...	29	2.4
16	AMPL_MOUSE (Q9CPY7) Cytosol aminopeptidase (EC 3.4.11.1) (Leucin...	29	2.4
17	HA1K_MOUSE (P04223) H-2 class I histocompatibility antigen, K-K ...	29	3.1
18	HA1B_BOVIN (P13753) BOLA class I histocompatibility antigen, alp...	29	3.1
19	AMPL_HUMAN (P28838) Cytosol aminopeptidase (EC 3.4.11.1) (Leucin...	29	3.1
20	AMPL_BOVIN (P00727) Cytosol aminopeptidase (EC 3.4.11.1) (Leucin...	29	3.1
21	HA1Y_MOUSE (P01895) H-2 class I histocompatibility antigen, alph...	29	3.1
22	HA12_MOUSE (P01900) H-2 class I histocompatibility antigen, D-D ...	29	3.1
23	1C17_HUMAN (Q95604) HLA class I histocompatibility antigen, Cw-1...	29	3.1
24	HA13_MOUSE (P14426) H-2 class I histocompatibility antigen, D-K ...	29	3.1
25	HA17_MOUSE (P14429) H-2 class I histocompatibility antigen, Q7 a...	29	3.1
26	HA1B_MOUSE (P01901) H-2 class I histocompatibility antigen, K-B ...	28	4.1
27	1C07_HUMAN (P10321) HLA class I histocompatibility antigen, Cw-7...	28	4.1
28	MQO_HAEDU (Q7VPC3) Probable malate:quinone oxidoreductase (EC 1....	28	5.3
29	HLAE_HUMAN (P13747) HLA class I histocompatibility antigen, alph...	28	5.3
30	THIC_HELHP (Q7VFU4) Thiamine biosynthesis protein thiC	28	5.3
31	1B73_HUMAN (Q31612) HLA class I histocompatibility antigen, B-73...	28	5.3
32	Y1454_MYCBO (P64850) Hypothetical protein Mb1454	28	6.9
33	Y1419_MYCTU (P64849) Hypothetical protein Rv1419/MT1462	28	6.9
34	HLAE_PANTR (Q95IT3) HLA class I histocompatibility antigen, alph...	28	6.9
35	KPCG_RABIT (P10829) Protein kinase C gamma type (EC 2.7.11.13) (...	28	6.9
36	YOJL_BACSU (O31852) Hypothetical protein yojL precursor	27	9.1
37	HA1Q_MOUSE (P14428) H-2 class I histocompatibility antigen, K-Q ...	27	9.1
38	HLAF_MACMU (P33617) HLA class I histocompatibility antigen, alph...	27	9.1
39	HA1W_MOUSE (P03991) H-2 class I histocompatibility antigen, K-W2...	27	9.1

>HA11_RAT (P15978) Class I histocompatibility antigen, Non-RT1.A alpha-1|
           chain precursor
          Length = 319

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E  ++
Sbjct: 237 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPEPLSQ 296

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 297 RWEPSPS 303

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>TAR1_KLULA (Q6CQE5) Protein TAR1|
          Length = 109

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -2

Query: 76 FFSPFPHGTCTLSVIEEYLGLEG 8
          FFS F H TC+LSV  +YL L+G
Sbjct: 22 FFSSFHHCTCSLSVSRQYLALDG 44

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>TAR1_YEAST (Q8TGM6) Protein TAR1 (Transcript antisense to ribosomal RNA|
           protein 1)
          Length = 124

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -2

Query: 76  FFSPFPHGTCTLSVIEEYLGLEG 8
           FFS F H TC+LSV  +YL L+G
Sbjct: 37  FFSSFHHCTCSLSVSRQYLALDG 59

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>HA12_RAT (P16391) RT1 class I histocompatibility antigen, AA alpha chain|
           precursor
          Length = 371

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + +  ++
Sbjct: 237 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQ 296

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 297 RWEPSPS 303

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>HA1A_BOVIN (P13752) BOLA class I histocompatibility antigen, alpha chain BL3-6|
           precursor
          Length = 360

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +2

Query: 176 HDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNRPWR-TE 334
           HDG  +  +  L   +P G G FQ+W   V+P   E   T R  HE ++E     W   +
Sbjct: 240 HDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGDEQRYTCRVQHEGLQEPLTLRWEPPQ 299

Query: 335 PTYV 346
           P+++
Sbjct: 300 PSFL 303

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>HA18_MOUSE (P14430) H-2 class I histocompatibility antigen, Q8 alpha chain|
           precursor
          Length = 326

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T   +HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 320 PWRTEPTYVA 349
            W   P+ V+
Sbjct: 294 RWEPPPSTVS 303

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>HA1Z_MOUSE (P01896) H-2 class I histocompatibility antigen, alpha chain (Clone|
           PH-2D-2) (Fragment)
          Length = 185

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E    
Sbjct: 47  ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 106

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 107 RWEPPPS 113

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>HA1L_MOUSE (P01897) H-2 class I histocompatibility antigen, L-D alpha chain|
           precursor
          Length = 362

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E    
Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 296

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 297 RWEPPPS 303

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>HA11_MOUSE (P01899) H-2 class I histocompatibility antigen, D-B alpha chain|
           precursor (H-2D(B))
          Length = 362

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T R  HE + E    
Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTL 296

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 297 RWEPPPS 303

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>HA10_MOUSE (P01898) H-2 class I histocompatibility antigen, Q10 alpha chain|
           precursor
          Length = 322

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTL 293

Query: 320 PWRTEP---TYVAKYGDDLWLGVK 382
            W   P   + ++   D LW  +K
Sbjct: 294 RWEPPPSTDSIMSHIADLLWPSLK 317

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>HA15_MOUSE (P06339) H-2 class I histocompatibility antigen, D-37 alpha chain|
           precursor
          Length = 357

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 233 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPLGKEQYYTCHVYHEGLPEPLTL 292

Query: 320 PWRTEPTYVA 349
            W   P+ V+
Sbjct: 293 RWEPPPSTVS 302

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>HA1D_MOUSE (P01902) H-2 class I histocompatibility antigen, K-D alpha chain|
           precursor (H-2K(D))
          Length = 368

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + E    
Sbjct: 234 ITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCHVHHKGLPEPLTL 293

Query: 320 PWRTEPTYVA 349
            W+  P+ V+
Sbjct: 294 RWKLPPSTVS 303

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>HA19_CANFA (P18466) DLA class I histocompatibility antigen, A9/A9 alpha chain|
           precursor
          Length = 362

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 212 KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNRPWRTEP 337
           +P G G FQ+W   V+P   E   T    HE + E   R W   P
Sbjct: 259 RPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPEPITRRWEPSP 303

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>HA14_MOUSE (P14427) H-2 class I histocompatibility antigen, D-P alpha chain|
           precursor (H-2D(P))
          Length = 368

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWAALVVPLGKEQNYTCHVEHEGLPEPLTL 293

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 294 RWEPPPS 300

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>ZP2_MOUSE (P20239) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 713

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 115 IGSQVLYCTPRLG---FFSPFPHGTCTLSVIEEY 23
           +GS++L CT  L    F   FP+ TCT+ V+  Y
Sbjct: 77  LGSEILNCTYALDLERFVLKFPYETCTIKVVGGY 110

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>AMPL_MOUSE (Q9CPY7) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline
           aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase)
          Length = 487

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 110 SDANNQSKERSAGALTLTAYLSHDGSARKW 199
           +D NN  K RSAGA T  A+L    +  KW
Sbjct: 416 ADVNNLGKYRSAGACTAAAFLREFVTHTKW 445

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>HA1K_MOUSE (P04223) H-2 class I histocompatibility antigen, K-K alpha chain|
           precursor (H-2K(K))
          Length = 369

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTL 293

Query: 320 PWRTEPTYVA 349
            W   P+ V+
Sbjct: 294 RWEPPPSTVS 303

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>HA1B_BOVIN (P13753) BOLA class I histocompatibility antigen, alpha chain BL3-7|
           precursor
          Length = 364

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = +2

Query: 212 KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNRPWRTEPT 340
           +P G G FQ+W   V+P   E   T R  HE ++E     W    T
Sbjct: 261 RPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQT 306

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>AMPL_HUMAN (P28838) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline
           aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase)
           (Peptidase S)
          Length = 487

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 110 SDANNQSKERSAGALTLTAYLSHDGSARKW 199
           +D NN  K RSAGA T  A+L    +  KW
Sbjct: 416 ADVNNIGKYRSAGACTAAAFLKEFVTHPKW 445

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>AMPL_BOVIN (P00727) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase) (Proline
           aminopeptidase) (EC 3.4.11.5) (Prolyl aminopeptidase)
          Length = 487

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 110 SDANNQSKERSAGALTLTAYLSHDGSARKW 199
           +D NN  K RSAGA T  A+L    +  KW
Sbjct: 416 ADVNNIGKYRSAGACTAAAFLKEFVTHPKW 445

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>HA1Y_MOUSE (P01895) H-2 class I histocompatibility antigen, alpha chain (Clone|
           PAG64) (Fragment)
          Length = 298

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   ++ E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 170 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTL 229

Query: 320 PWRTE 334
            W  E
Sbjct: 230 RWGKE 234

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>HA12_MOUSE (P01900) H-2 class I histocompatibility antigen, D-D alpha chain|
           precursor (H-2D(D))
          Length = 365

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   ++ E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 237 ITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPLGKEQKYTCHVEHEGLPEPLTL 296

Query: 320 PWRTE 334
            W  E
Sbjct: 297 RWGKE 301

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>1C17_HUMAN (Q95604) HLA class I histocompatibility antigen, Cw-17 alpha chain|
           precursor (MHC class I antigen Cw*17)
          Length = 372

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
 Frame = +2

Query: 158 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +T     DG  +  +  L   +P G G FQ+W   V+P   E   T    HE ++E    
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLQEPCTL 296

Query: 320 PWR--TEPT 340
            W+  ++PT
Sbjct: 297 RWKPSSQPT 305

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>HA13_MOUSE (P14426) H-2 class I histocompatibility antigen, D-K alpha chain|
           precursor (H-2D(K))
          Length = 362

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    HE + E    
Sbjct: 237 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVYHEGLPEPLTL 296

Query: 320 PWRTEPT 340
            W   P+
Sbjct: 297 RWEPPPS 303

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>HA17_MOUSE (P14429) H-2 class I histocompatibility antigen, Q7 alpha chain|
           precursor (QA-2 antigen)
          Length = 334

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T   +HE + E    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCHVNHEGLPEPLTL 293

Query: 320 PW-RTEP 337
            W R EP
Sbjct: 294 RWGRWEP 300

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>HA1B_MOUSE (P01901) H-2 class I histocompatibility antigen, K-B alpha chain|
           precursor (H-2K(B))
          Length = 369

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + E    
Sbjct: 234 ITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTL 293

Query: 320 PWRTEPTYVA 349
            W   P+ V+
Sbjct: 294 RWEPPPSTVS 303

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>1C07_HUMAN (P10321) HLA class I histocompatibility antigen, Cw-7 alpha chain|
           precursor (MHC class I antigen Cw*7)
          Length = 366

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
 Frame = +2

Query: 158 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +T     DG  +  +  L   +P G G FQ+W   V+P   E   T    HE ++E    
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTL 296

Query: 320 PWR--TEPT 340
            W   ++PT
Sbjct: 297 SWEPSSQPT 305

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>MQO_HAEDU (Q7VPC3) Probable malate:quinone oxidoreductase (EC 1.1.99.16)|
           (Malate dehydrogenase [acceptor]) (MQO)
          Length = 489

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 80  QSGSAIENLRSDANNQSKERSAGALT--LTAYLSHDGSARKWEQRLKPLGVGAFQRWKIY 253
           Q+ SA E L +       + + G+LT  L AYL+  G A K   R+K +   A   W++ 
Sbjct: 165 QNRSATEILAASYIENGTDVNFGSLTRKLCAYLTQQGKALKLMHRVKDIKQLANGDWQLT 224

Query: 254 VL 259
           VL
Sbjct: 225 VL 226

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>HLAE_HUMAN (P13747) HLA class I histocompatibility antigen, alpha chain E|
           precursor (MHC class I antigen E)
          Length = 358

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT     +G  +  E    +P G G FQ+W   V+P   E   T    HE + E    
Sbjct: 234 ITLTWQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTL 293

Query: 320 PWR--TEPT 340
            W+  ++PT
Sbjct: 294 RWKPASQPT 302

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>THIC_HELHP (Q7VFU4) Thiamine biosynthesis protein thiC|
          Length = 457

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 71  KEPQSGSAIENLRSDANNQSKERSAGALTLTAYLSHDGSARKWEQRLKPLGVGAFQRWKI 250
           KE +  + IEN+ ++   Q  ER  G L + A ++H          LKP+G+G   R KI
Sbjct: 28  KEMEYVANIENISAELIRQEIER--GRLIIPANINHTN--------LKPMGIGIATRTKI 77

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>1B73_HUMAN (Q31612) HLA class I histocompatibility antigen, B-73 alpha chain|
           precursor (MHC class I antigen B*73)
          Length = 363

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +2

Query: 158 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +T     DG  +  +  L   +P G G FQ+W   V+P   E   T    HE ++E    
Sbjct: 237 ITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLQEPCTL 296

Query: 320 PWR 328
            W+
Sbjct: 297 RWK 299

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>Y1454_MYCBO (P64850) Hypothetical protein Mb1454|
          Length = 157

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 KPIDLAMSRLKRALTGLGGPNPRMWQNT 356
           +P  L  S L   LT LGGP+P  W +T
Sbjct: 114 QPDGLVKSDLDACLTVLGGPDPGTWVST 141

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>Y1419_MYCTU (P64849) Hypothetical protein Rv1419/MT1462|
          Length = 157

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 273 KPIDLAMSRLKRALTGLGGPNPRMWQNT 356
           +P  L  S L   LT LGGP+P  W +T
Sbjct: 114 QPDGLVKSDLDACLTVLGGPDPGTWVST 141

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>HLAE_PANTR (Q95IT3) HLA class I histocompatibility antigen, alpha chain E|
           precursor (MHC class I antigen E)
          Length = 350

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = +2

Query: 158 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +T     DG     +  L   +P G G FQ+W   V+P   E   T    HE + E    
Sbjct: 234 ITLTWQQDGEGHTQDTELVDTRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTL 293

Query: 320 PWR--TEPT 340
            W+  ++PT
Sbjct: 294 RWKPASQPT 302

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>KPCG_RABIT (P10829) Protein kinase C gamma type (EC 2.7.11.13) (PKC-gamma)|
           (PKC-delta)
          Length = 697

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 363 SSPYFATYVGSVLQGLLELSSTCSWLDRSVSGQIGRT 253
           SSP F  + GS+L GL+     CS  + +V  +  RT
Sbjct: 109 SSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRT 145

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>YOJL_BACSU (O31852) Hypothetical protein yojL precursor|
          Length = 414

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +2

Query: 185 SARKWEQRLKPLGVGAFQRWKIYVLPI*PETDRSSHEQVEESSNRPWRTEPTYVAKYGDD 364
           SA K E +LK   +   Q  K+      PE+ + S      SS        TY   YGD 
Sbjct: 49  SALKSENKLKSTVLYVGQSLKV------PESSKKSTTSPSNSSKTS-----TYTVAYGDS 97

Query: 365 LWLGVK 382
           LW+  K
Sbjct: 98  LWMIAK 103

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>HA1Q_MOUSE (P14428) H-2 class I histocompatibility antigen, K-Q alpha chain|
           (H-2K(Q)) (Fragment)
          Length = 328

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + +    
Sbjct: 194 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPKPLTL 253

Query: 320 PWRTEPTYVA 349
            W   P+ V+
Sbjct: 254 RWEPPPSAVS 263

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>HLAF_MACMU (P33617) HLA class I histocompatibility antigen, alpha chain F|
           precursor (HLA F antigen) (Leukocyte antigen F)
          Length = 348

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
 Frame = +2

Query: 158 LTAYLSHDGSARKWEQRL---KPLGVGAFQRWKIYVLPI*PETDRSSHEQVE-------- 304
           +T     DG  +  +  L   +P G G FQ+W   V+P   E   + H Q E        
Sbjct: 236 ITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLTL 295

Query: 305 --ESSNRP 322
             ESS++P
Sbjct: 296 RWESSSQP 303

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>HA1W_MOUSE (P03991) H-2 class I histocompatibility antigen, K-W28 alpha chain|
           precursor
          Length = 368

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 152 LTLTAYLSHDGSARKWEQ-RLKPLGVGAFQRWKIYVLPI*PE---TDRSSHEQVEESSNR 319
           +TLT  L+ +   +  E    +P G G FQ+W   V+P+  E   T    H+ + +    
Sbjct: 234 ITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPKPLTL 293

Query: 320 PWRTEPTYVA 349
            W   P+ V+
Sbjct: 294 RWEPPPSAVS 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,722,298
Number of Sequences: 219361
Number of extensions: 1257022
Number of successful extensions: 3163
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3158
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result