ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet11e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187760.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
3gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.5
6gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.5
7emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.5
8emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
9emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.5
10gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.5
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
12gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.5
13gb|BC039301.1| Homo sapiens cache domain containing 1, mRNA (cDN... 40 6.1
14ref|XM_524728.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 40 6.1
15gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA inc... 40 6.1
16ref|XM_605440.2| PREDICTED: Bos taurus similar to neuronal PAS d... 40 6.1
17emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.1
18gb|AC115302.4| Mus musculus BAC clone RP24-107D24 from chromosom... 40 6.1
19emb|AL590405.19| Human DNA sequence from clone RP11-124M24 on ch... 40 6.1
20emb|AL833000.1|HSM804311 Homo sapiens mRNA; cDNA DKFZp666B124 (f... 40 6.1
21gb|AE011984.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.1
22dbj|AK024256.1| Homo sapiens cDNA FLJ14194 fis, clone NT2RP3001282 40 6.1
23dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
25gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Ca... 40 6.1
26dbj|AB062936.1| Macaca fascicularis brain cDNA clone:QflA-11493,... 40 6.1
27gb|AY166713.1| Pantoea stewartii zeaxanthin-diglucoside biosynth... 40 6.1
28gb|AF247362.1|AF247362 Petromyzon marinus Spi transcription fact... 40 6.1
29dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.1
30dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
31gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the ... 40 6.1
32emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.1
33gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, co... 40 6.1
34gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.1
35emb|BX537603.1|HSM806319 Homo sapiens mRNA; cDNA DKFZp686L04115 ... 40 6.1
36gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.1
37gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
38emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F... 40 6.1
39ref|NM_020925.1| Homo sapiens cache domain containing 1 (CACHD1)... 40 6.1
40dbj|AB046793.1| Homo sapiens mRNA for KIAA1573 protein, partial cds 40 6.1 
>ref|NM_187760.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1575

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 87/105 (82%), Gaps = 3/105 (2%)
 Strand = Plus / Plus

                                                                       
Query: 209 tgttcaggacggtgaagcaggggacgcggaaccaggctaggctgctgtaccaccggctgg 268
           |||| |||||||||| ||||| | |||||||||| ||| ||  |||||||||||| || |
Sbjct: 17  tgttgaggacggtgacgcaggcggcgcggaaccacgctcggacgctgtaccaccgcctcg 76

                                                        
Query: 269 tgtgccgcc---tgccgcacctcctcgccgtcacgctgctcctcg 310
           |  ||||||   |||||| | ||||||||||||||||||| ||||
Sbjct: 77  tcggccgccacctgccgcgcatcctcgccgtcacgctgctgctcg 121



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 404 gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcc 449
           |||||| ||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 209 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggcc 254
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 87/105 (82%), Gaps = 3/105 (2%)
 Strand = Plus / Plus

                                                                           
Query: 209     tgttcaggacggtgaagcaggggacgcggaaccaggctaggctgctgtaccaccggctgg 268
               |||| |||||||||| ||||| | |||||||||| ||| ||  |||||||||||| || |
Sbjct: 3384431 tgttgaggacggtgacgcaggcggcgcggaaccacgctcggacgctgtaccaccgcctcg 3384490

                                                            
Query: 269     tgtgccgcc---tgccgcacctcctcgccgtcacgctgctcctcg 310
               |  ||||||   |||||| | ||||||||||||||||||| ||||
Sbjct: 3384491 tcggccgccacctgccgcgcatcctcgccgtcacgctgctgctcg 3384535



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                             
Query: 404     gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcc 449
               |||||| ||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 3384623 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggcc 3384668
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>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12,
             complete sequence
          Length = 177327

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 87/105 (82%), Gaps = 3/105 (2%)
 Strand = Plus / Minus

                                                                         
Query: 209   tgttcaggacggtgaagcaggggacgcggaaccaggctaggctgctgtaccaccggctgg 268
             |||| |||||||||| ||||| | |||||||||| ||| ||  |||||||||||| || |
Sbjct: 44783 tgttgaggacggtgacgcaggcggcgcggaaccacgctcggacgctgtaccaccgcctcg 44724

                                                          
Query: 269   tgtgccg---cctgccgcacctcctcgccgtcacgctgctcctcg 310
             |  ||||   |||||||| | ||||||||||||||||||| ||||
Sbjct: 44723 tcggccgccacctgccgcgcatcctcgccgtcacgctgctgctcg 44679



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 404   gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcc 449
             |||||| ||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 44591 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggcc 44546
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 87/105 (82%), Gaps = 3/105 (2%)
 Strand = Plus / Plus

                                                                           
Query: 209     tgttcaggacggtgaagcaggggacgcggaaccaggctaggctgctgtaccaccggctgg 268
               |||| |||||||||| ||||| | |||||||||| ||| ||  |||||||||||| || |
Sbjct: 3384542 tgttgaggacggtgacgcaggcggcgcggaaccacgctcggacgctgtaccaccgcctcg 3384601

                                                            
Query: 269     tgtgccgcc---tgccgcacctcctcgccgtcacgctgctcctcg 310
               |  ||||||   |||||| | ||||||||||||||||||| ||||
Sbjct: 3384602 tcggccgccacctgccgcgcatcctcgccgtcacgctgctgctcg 3384646



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                             
Query: 404     gctgcgtggccgcggcgtacgcctacgccgtgtcgcggccgcggcc 449
               |||||| ||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 3384734 gctgcgcggcggcggcgtacgcgtacgccatgtcgcggccgcggcc 3384779
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 374     acgcggccgtgctggtggccg 394
               |||||||||||||||||||||
Sbjct: 1849896 acgcggccgtgctggtggccg 1849916
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 427    tacgccgtgtcgcggccgcggcccg 451
              ||||| |||||||||||||||||||
Sbjct: 112979 tacgcggtgtcgcggccgcggcccg 112955



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 333     cacgctgtcgatcgccgcgc 352
               ||||||||||||||||||||
Sbjct: 1359257 cacgctgtcgatcgccgcgc 1359276
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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 374    acgcggccgtgctggtggccg 394
              |||||||||||||||||||||
Sbjct: 127732 acgcggccgtgctggtggccg 127752
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 427     tacgccgtgtcgcggccgcggcccg 451
               ||||| |||||||||||||||||||
Sbjct: 1508574 tacgcggtgtcgcggccgcggcccg 1508550



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 333     cacgctgtcgatcgccgcgc 352
               ||||||||||||||||||||
Sbjct: 2676674 cacgctgtcgatcgccgcgc 2676693
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>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14
          Length = 300050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 374    acgcggccgtgctggtggccg 394
              |||||||||||||||||||||
Sbjct: 230354 acgcggccgtgctggtggccg 230374
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 427     tacgccgtgtcgcggccgcggcccg 451
               ||||| |||||||||||||||||||
Sbjct: 1092486 tacgcggtgtcgcggccgcggcccg 1092462



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   cacgctgtcgatcgccgcgc 352
             ||||||||||||||||||||
Sbjct: 82295 cacgctgtcgatcgccgcgc 82276
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 286     ctcctcgccgtcacgctgctcctcg 310
               |||||||||||| ||||||||||||
Sbjct: 2452279 ctcctcgccgtcgcgctgctcctcg 2452255
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 427     tacgccgtgtcgcggccgcggcccg 451
               ||||| |||||||||||||||||||
Sbjct: 1528007 tacgcggtgtcgcggccgcggcccg 1528031



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    cacgctgtcgatcgccgcgc 352
              ||||||||||||||||||||
Sbjct: 469378 cacgctgtcgatcgccgcgc 469359
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>gb|BC039301.1| Homo sapiens cache domain containing 1, mRNA (cDNA clone MGC:39570
            IMAGE:4836806), complete cds
          Length = 5329

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gctgctgtaccaccggctgg 268
            ||||||||||||||||||||
Sbjct: 1816 gctgctgtaccaccggctgg 1835
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>ref|XM_524728.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA B430218L07 gene
            (LOC469343), mRNA
          Length = 5481

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gctgctgtaccaccggctgg 268
            ||||||||||||||||||||
Sbjct: 3534 gctgctgtaccaccggctgg 3553
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>gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA incP1beta region, partial sequence
             and transposon Tntsa, complete sequence
          Length = 38756

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   cgcggccgtgctggtggccg 394
             ||||||||||||||||||||
Sbjct: 31153 cgcggccgtgctggtggccg 31172



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   cgcggccgtgctggtggccg 394
             ||||||||||||||||||||
Sbjct: 23978 cgcggccgtgctggtggccg 23959
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>ref|XM_605440.2| PREDICTED: Bos taurus similar to neuronal PAS domain protein 3
            isoform 1 (LOC527053), mRNA
          Length = 3349

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  gcggccgtgctggtggccgc 395
            ||||||||||||||||||||
Sbjct: 1742 gcggccgtgctggtggccgc 1723
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 390     ggccgcgtgcgcgggctgcg 409
               ||||||||||||||||||||
Sbjct: 4003067 ggccgcgtgcgcgggctgcg 4003086
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>gb|AC115302.4| Mus musculus BAC clone RP24-107D24 from chromosome 18, complete sequence
          Length = 162927

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 170    gtccttgtggaggcggaggcggag 193
              |||||||||||| |||||||||||
Sbjct: 111045 gtccttgtggagacggaggcggag 111022
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>emb|AL590405.19| Human DNA sequence from clone RP11-124M24 on chromosome 1 Contains part
              of a novel gene (KIAA1573), complete sequence
          Length = 133791

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    gctgctgtaccaccggctgg 268
              ||||||||||||||||||||
Sbjct: 116726 gctgctgtaccaccggctgg 116745
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>emb|AL833000.1|HSM804311 Homo sapiens mRNA; cDNA DKFZp666B124 (from clone DKFZp666B124)
          Length = 3730

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gctgctgtaccaccggctgg 268
           ||||||||||||||||||||
Sbjct: 279 gctgctgtaccaccggctgg 298
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>gb|AE011984.1| Xanthomonas axonopodis pv. citri str. 306,  section 362 of 469 of the
            complete genome
          Length = 13510

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 390  ggccgcgtgcgcgggctgcg 409
            ||||||||||||||||||||
Sbjct: 2955 ggccgcgtgcgcgggctgcg 2974
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>dbj|AK024256.1| Homo sapiens cDNA FLJ14194 fis, clone NT2RP3001282
          Length = 3693

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gctgctgtaccaccggctgg 268
           ||||||||||||||||||||
Sbjct: 255 gctgctgtaccaccggctgg 274
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 174      ttgtggaggcggaggcggag 193
                ||||||||||||||||||||
Sbjct: 16099950 ttgtggaggcggaggcggag 16099931
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 152      acgtgcgagcgagcgagcgt 171
                ||||||||||||||||||||
Sbjct: 18070882 acgtgcgagcgagcgagcgt 18070901
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>gb|AC079315.30| Homo sapiens 12 BAC RP11-380L11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 121450

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   gtggaggcggaggcggagcc 195
             ||||||||||||||||||||
Sbjct: 90663 gtggaggcggaggcggagcc 90644
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>dbj|AB062936.1| Macaca fascicularis brain cDNA clone:QflA-11493, similar to human
            KIAA1573 protein, mRNA, NM_020925
          Length = 4564

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gctgctgtaccaccggctgg 268
            ||||||||||||||||||||
Sbjct: 1098 gctgctgtaccaccggctgg 1117
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>gb|AY166713.1| Pantoea stewartii zeaxanthin-diglucoside biosynthetic operon,
            complete sequence
          Length = 6586

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  cggctggtgtgccgcctgcc 281
            ||||||||||||||||||||
Sbjct: 2308 cggctggtgtgccgcctgcc 2289
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>gb|AF247362.1|AF247362 Petromyzon marinus Spi transcription factor mRNA, complete cds
          Length = 1272

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 gtacgtgcgagcgagcgagc 169
           ||||||||||||||||||||
Sbjct: 66  gtacgtgcgagcgagcgagc 47
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     gcgaggcgcgcgccaacgcg 378
               ||||||||||||||||||||
Sbjct: 8377452 gcgaggcgcgcgccaacgcg 8377433
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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_F04
          Length = 139563

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    acgtgcgagcgagcgagcgt 171
              ||||||||||||||||||||
Sbjct: 132476 acgtgcgagcgagcgagcgt 132495
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>gb|AE005006.1| Halobacterium sp. NRC-1 section 37 of 170 of the complete genome
          Length = 13283

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  cgtgctggtggccgcgtgcgcggg 404
            |||||||||||||||| |||||||
Sbjct: 4931 cgtgctggtggccgcgggcgcggg 4908
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     cggccgtgctggtggccgcg 396
               ||||||||||||||||||||
Sbjct: 3609783 cggccgtgctggtggccgcg 3609764
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>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome
          Length = 161046

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    cgtgtcgcggccgcggcccg 451
              ||||||||||||||||||||
Sbjct: 152999 cgtgtcgcggccgcggcccg 153018
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 272     gccgcctgccgcacctcctcgccg 295
               |||||||| |||||||||||||||
Sbjct: 2486961 gccgcctggcgcacctcctcgccg 2486984
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>emb|BX537603.1|HSM806319 Homo sapiens mRNA; cDNA DKFZp686L04115 (from clone DKFZp686L04115)
          Length = 5565

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gctgctgtaccaccggctgg 268
            ||||||||||||||||||||
Sbjct: 2108 gctgctgtaccaccggctgg 2127
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     gctggtggccgcgtgcgcgg 403
               ||||||||||||||||||||
Sbjct: 2540061 gctggtggccgcgtgcgcgg 2540042
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 174      ttgtggaggcggaggcggag 193
                ||||||||||||||||||||
Sbjct: 16053183 ttgtggaggcggaggcggag 16053164
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>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar
              Nipponbare of ssp. japonica of Oryza sativa (rice),
              complete sequence
          Length = 165955

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ttgtggaggcggaggcggag 193
              ||||||||||||||||||||
Sbjct: 143393 ttgtggaggcggaggcggag 143412
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>ref|NM_020925.1| Homo sapiens cache domain containing 1 (CACHD1), mRNA
          Length = 5565

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gctgctgtaccaccggctgg 268
            ||||||||||||||||||||
Sbjct: 2108 gctgctgtaccaccggctgg 2127
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>dbj|AB046793.1| Homo sapiens mRNA for KIAA1573 protein, partial cds
          Length = 5050

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  gctgctgtaccaccggctgg 268
            ||||||||||||||||||||
Sbjct: 1612 gctgctgtaccaccggctgg 1631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,554,069
Number of Sequences: 3902068
Number of extensions: 2554069
Number of successful extensions: 63710
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61662
Number of HSP's gapped (non-prelim): 2044
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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