ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet11e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY022447.1| Oryza sativa microsatellite MRG4772 containing (A... 38 4.6
2gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.6
3gb|AC156985.12| Mus musculus chromosome 7, clone RP23-417L14, co... 38 4.6
4gb|AC127226.3| Mus musculus BAC clone RP24-500I10 from chromosom... 38 4.6
5gb|AC144819.8| Mus musculus BAC clone RP23-162A11 from chromosom... 38 4.6
6gb|AC158168.2| Mus musculus BAC clone RP23-325B1 from chromosome... 38 4.6
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
9dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
10gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complet... 38 4.6
11emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 ... 38 4.6
12gb|AC162521.4| Mus musculus chromosome 7, clone RP23-356O13, com... 38 4.6
13gb|AC120846.16| Mus musculus chromosome 7, clone RP24-317L6, com... 38 4.6

>gb|AY022447.1| Oryza sativa microsatellite MRG4772 containing (AGA)X9, genomic
           sequence
          Length = 227

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 77  ccaacggagaagtagcagtacca 99
           ||||| |||||||||||||||||
Sbjct: 223 ccaaccgagaagtagcagtacca 201



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>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09,
              complete sequence
          Length = 177374

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 55     ctagttgcagtacaccacc 73
              |||||||||||||||||||
Sbjct: 128648 ctagttgcagtacaccacc 128666



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>gb|AC156985.12| Mus musculus chromosome 7, clone RP23-417L14, complete sequence
          Length = 179492

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     tttccgagctgctagtgct 24
             |||||||||||||||||||
Sbjct: 57500 tttccgagctgctagtgct 57482



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>gb|AC127226.3| Mus musculus BAC clone RP24-500I10 from chromosome 6, complete sequence
          Length = 166743

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 58     gttgcagtacaccaccaagccaa 80
              ||||||||| |||||||||||||
Sbjct: 153622 gttgcagtaaaccaccaagccaa 153644



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>gb|AC144819.8| Mus musculus BAC clone RP23-162A11 from chromosome 14, complete sequence
          Length = 198432

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     tccccatcaacagttcagg 47
              |||||||||||||||||||
Sbjct: 132289 tccccatcaacagttcagg 132271



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>gb|AC158168.2| Mus musculus BAC clone RP23-325B1 from chromosome 6, complete sequence
          Length = 184841

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 58     gttgcagtacaccaccaagccaa 80
              ||||||||| |||||||||||||
Sbjct: 148347 gttgcagtaaaccaccaagccaa 148325



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 55       ctagttgcagtacaccacc 73
                |||||||||||||||||||
Sbjct: 20872847 ctagttgcagtacaccacc 20872865



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 77       ccaacggagaagtagcagtacca 99
                ||||| |||||||||||||||||
Sbjct: 43164409 ccaaccgagaagtagcagtacca 43164431



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>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0020E09
          Length = 149195

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 77    ccaacggagaagtagcagtacca 99
             ||||| |||||||||||||||||
Sbjct: 51864 ccaaccgagaagtagcagtacca 51886



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>gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complete sequence
          Length = 158923

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    tacagtccccatcaacagt 42
             |||||||||||||||||||
Sbjct: 94969 tacagtccccatcaacagt 94951



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>emb|BX004992.13| Zebrafish DNA sequence from clone CH211-120E13 in linkage group 16,
              complete sequence
          Length = 195432

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     agttcaggcttacagctag 58
              |||||||||||||||||||
Sbjct: 113814 agttcaggcttacagctag 113832



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>gb|AC162521.4| Mus musculus chromosome 7, clone RP23-356O13, complete sequence
          Length = 207307

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     tttccgagctgctagtgct 24
             |||||||||||||||||||
Sbjct: 15999 tttccgagctgctagtgct 16017



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>gb|AC120846.16| Mus musculus chromosome 7, clone RP24-317L6, complete sequence
          Length = 192429

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      tttccgagctgctagtgct 24
              |||||||||||||||||||
Sbjct: 110921 tttccgagctgctagtgct 110903


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 536,704
Number of Sequences: 3902068
Number of extensions: 536704
Number of successful extensions: 36031
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35980
Number of HSP's gapped (non-prelim): 51
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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