ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet11d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184519.2| Oryza sativa (japonica cultivar-group), mRNA Length = 983 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 177 tctccaggctgctcaccagggacagctccgccgcggcgccgtccttccgggtctactacg 236 |||||| |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||| Sbjct: 157 tctccaagctgctgtccagggagagcgccgccgcggcgccgtcgttcagggtgtactacg 216 Query: 237 gcgtgtcctccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||| ||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 217 gcgtcgcctccgcgggctccgtgcccttcctgtgggagtcgcagccgggcacgcccaaga 276 Query: 297 acgccgcctccgacaccgccatgccgccgctcacgcccccgccgtcctactactccgccg 356 ||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||| Sbjct: 277 acgccatgtccgacgccgtgctgccgccgctcacgccgccgccgtcctactacaccgccg 336
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 177 tctccaggctgctcaccagggacagctccgccgcggcgccgtccttccgggtctactacg 236 |||||| |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||| Sbjct: 3414788 tctccaagctgctgtccagggagagcgccgccgcggcgccgtcgttcagggtgtactacg 3414729 Query: 237 gcgtgtcctccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||| ||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 3414728 gcgtcgcctccgcgggctccgtgcccttcctgtgggagtcgcagccgggcacgcccaaga 3414669 Query: 297 acgccgcctccgacaccgccatgccgccgctcacgcccccgccgtcctactactccgccg 356 ||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||| Sbjct: 3414668 acgccatgtccgacgccgtgctgccgccgctcacgccgccgccgtcctactacaccgccg 3414609 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 249 ccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||| ||||||||||| | ||||||||||||||||||||||||||| Sbjct: 35241420 ccggctcggtgccgttcgtctgggagtcgcagcctggcacgcccaag 35241466 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 95 tccatggcggccaccgtcggcaac 118 |||||||||||||||||||||||| Sbjct: 22701998 tccatggcggccaccgtcggcaac 22701975
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 177 tctccaggctgctcaccagggacagctccgccgcggcgccgtccttccgggtctactacg 236 |||||| |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||| Sbjct: 93158 tctccaagctgctgtccagggagagcgccgccgcggcgccgtcgttcagggtgtactacg 93099 Query: 237 gcgtgtcctccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||| ||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 93098 gcgtcgcctccgcgggctccgtgcccttcctgtgggagtcgcagccgggcacgcccaaga 93039 Query: 297 acgccgcctccgacaccgccatgccgccgctcacgcccccgccgtcctactactccgccg 356 ||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||| Sbjct: 93038 acgccatgtccgacgccgtgctgccgccgctcacgccgccgccgtcctactacaccgccg 92979
>dbj|AK122083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A19, full insert sequence Length = 1079 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 177 tctccaggctgctcaccagggacagctccgccgcggcgccgtccttccgggtctactacg 236 |||||| |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||| Sbjct: 157 tctccaagctgctgtccagggagagcgccgccgcggcgccgtcgttcagggtgtactacg 216 Query: 237 gcgtgtcctccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||| ||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 217 gcgtcgcctccgcgggctccgtgcccttcctgtgggagtcgcagccgggcacgcccaaga 276 Query: 297 acgccgcctccgacaccgccatgccgccgctcacgcccccgccgtcctactactccgccg 356 ||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||| Sbjct: 277 acgccatgtccgacgccgtgctgccgccgctcacgccgccgccgtcctactacaccgccg 336
>dbj|AK101697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060C18, full insert sequence Length = 984 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 177 tctccaggctgctcaccagggacagctccgccgcggcgccgtccttccgggtctactacg 236 |||||| |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||| Sbjct: 157 tctccaagctgctgtccagggagagcgccgccgcggcgccgtcgttcagggtgtactacg 216 Query: 237 gcgtgtcctccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||| ||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 217 gcgtcgcctccgcgggctccgtgcccttcctgtgggagtcgcagccgggcacgcccaaga 276 Query: 297 acgccgcctccgacaccgccatgccgccgctcacgcccccgccgtcctactactccgccg 356 ||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||| Sbjct: 277 acgccatgtccgacgccgtgctgccgccgctcacgccgccgccgtcctactacaccgccg 336
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Minus Query: 177 tctccaggctgctcaccagggacagctccgccgcggcgccgtccttccgggtctactacg 236 |||||| |||||| ||||||| ||| |||||||||||||||| ||| |||| ||||||| Sbjct: 1548 tctccaagctgctgtccagggagagcgccgccgcggcgccgtcgttcagggtgtactacg 1489 Query: 237 gcgtgtcctccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||| ||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct: 1488 gcgtcgcctccgcgggctccgtgcccttcctgtgggagtcgcagccgggcacgcccaaga 1429 Query: 297 acgccgcctccgacaccgccatgccgccgctcacgcccccgccgtcctactactccgccg 356 ||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||| Sbjct: 1428 acgccatgtccgacgccgtgctgccgccgctcacgccgccgccgtcctactacaccgccg 1369
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 121 bits (61), Expect = 2e-24 Identities = 117/135 (86%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 218 tccttccgggtctactacggcgtgtcctccgccggcgcggtgccgttcctgtgggagtcg 277 |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| Sbjct: 15560559 tccttccgcgtctactacggcgtcgcctccgccggctcggtgccgttcctctgggagtcg 15560618 Query: 278 cagcctggcacgcccaagaacgccgcc---tccgacaccgccatgccgccgctcacgccc 334 ||| || ||||||||||||| |||| | || | ||||| |||||||||||||||| Sbjct: 15560619 gcgccggggacgcccaagaacgacgccatcttcgccgccgccctgccgccgctcacgccg 15560678 Query: 335 ccgccgtcctactac 349 ||||||||||||||| Sbjct: 15560679 ccgccgtcctactac 15560693 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 260 ccgttcctgtgggagtcgcagcctggcacgcccaagaacgccgcctccgacaccgccatg 319 ||||||||||||||||||||||| ||||||||||||| | | ||||| | ||| | Sbjct: 3798456 ccgttcctgtgggagtcgcagcccggcacgcccaagagctcgccctccaccgccgtgctc 3798397 Query: 320 ccgccgctcacgcccccgccgtcctactactccgccgccgccaagaa 366 |||||||||||||| ||||| || |||||| || |||||| |||||| Sbjct: 3798396 ccgccgctcacgccgccgccctcgtactacgcctccgccggcaagaa 3798350
>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0049D13, complete sequence Length = 136942 Score = 121 bits (61), Expect = 2e-24 Identities = 117/135 (86%), Gaps = 3/135 (2%) Strand = Plus / Plus Query: 218 tccttccgggtctactacggcgtgtcctccgccggcgcggtgccgttcctgtgggagtcg 277 |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||| Sbjct: 90049 tccttccgcgtctactacggcgtcgcctccgccggctcggtgccgttcctctgggagtcg 90108 Query: 278 cagcctggcacgcccaagaacgccgcc---tccgacaccgccatgccgccgctcacgccc 334 ||| || ||||||||||||| |||| | || | ||||| |||||||||||||||| Sbjct: 90109 gcgccggggacgcccaagaacgacgccatcttcgccgccgccctgccgccgctcacgccg 90168 Query: 335 ccgccgtcctactac 349 ||||||||||||||| Sbjct: 90169 ccgccgtcctactac 90183
>gb|DQ429258.1| Sorghum propinquum locus pSB0739 genomic sequence Length = 796 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 749 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 793
>gb|DQ429257.1| Sorghum bicolor voucher PI585454 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429256.1| Sorghum bicolor voucher PI267539 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429255.1| Sorghum bicolor voucher PI267408 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429254.1| Sorghum bicolor voucher PI221607 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429253.1| Sorghum bicolor voucher PI152702 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429252.1| Sorghum bicolor voucher NSL92371 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429251.1| Sorghum bicolor voucher NSL87902b locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429250.1| Sorghum bicolor voucher NSL87902a locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429249.1| Sorghum bicolor voucher NSL87666 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429248.1| Sorghum bicolor voucher NSL77217 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429247.1| Sorghum bicolor voucher NSL77034 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429246.1| Sorghum bicolor voucher NSL56174 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429245.1| Sorghum bicolor voucher NSL56003 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429244.1| Sorghum bicolor voucher NSL55243 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429242.1| Sorghum bicolor voucher NSL51030 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429241.1| Sorghum bicolor voucher NSL50875 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>gb|DQ429240.1| Sorghum bicolor voucher BTx623 locus pSB0739 genomic sequence Length = 799 Score = 73.8 bits (37), Expect = 4e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 752 gctgttcaccagggagagctccgccgcggcgccgtccttccgggt 796
>ref|XM_475660.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 684 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 260 ccgttcctgtgggagtcgcagcctggcacgcccaagaacgccgcctccgacaccgccatg 319 ||||||||||||||||||||||| ||||||||||||| | | ||||| | ||| | Sbjct: 154 ccgttcctgtgggagtcgcagcccggcacgcccaagagctcgccctccaccgccgtgctc 213 Query: 320 ccgccgctcacgcccccgccgtcctactactccgccgccgccaagaa 366 |||||||||||||| ||||| || |||||| || |||||| |||||| Sbjct: 214 ccgccgctcacgccgccgccctcgtactacgcctccgccggcaagaa 260
>ref|NM_190396.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2040 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 249 ccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||| ||||||||||| | ||||||||||||||||||||||||||| Sbjct: 1532 ccggctcggtgccgttcgtctgggagtcgcagcctggcacgcccaag 1578
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 260 ccgttcctgtgggagtcgcagcctggcacgcccaagaacgccgcctccgacaccgccatg 319 ||||||||||||||||||||||| ||||||||||||| | | ||||| | ||| | Sbjct: 119386 ccgttcctgtgggagtcgcagcccggcacgcccaagagctcgccctccaccgccgtgctc 119327 Query: 320 ccgccgctcacgcccccgccgtcctactactccgccgccgccaagaa 366 |||||||||||||| ||||| || |||||| || |||||| |||||| Sbjct: 119326 ccgccgctcacgccgccgccctcgtactacgcctccgccggcaagaa 119280
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 249 ccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||| ||||||||||| | ||||||||||||||||||||||||||| Sbjct: 120504 ccggctcggtgccgttcgtctgggagtcgcagcctggcacgcccaag 120550
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E11 Length = 146083 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 249 ccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||| ||||||||||| | ||||||||||||||||||||||||||| Sbjct: 5281 ccggctcggtgccgttcgtctgggagtcgcagcctggcacgcccaag 5327
>dbj|AK109061.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F04, full insert sequence Length = 1088 Score = 69.9 bits (35), Expect = 7e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 260 ccgttcctgtgggagtcgcagcctggcacgcccaagaacgccgcctccgacaccgccatg 319 ||||||||||||||||||||||| ||||||||||||| | | ||||| | ||| | Sbjct: 407 ccgttcctgtgggagtcgcagcccggcacgcccaagagctcgccctccaccgccgtgctc 466 Query: 320 ccgccgctcacgcccccgccgtcctactactccgccgccgccaagaa 366 |||||||||||||| ||||| || |||||| || |||||| |||||| Sbjct: 467 ccgccgctcacgccgccgccctcgtactacgcctccgccggcaagaa 513
>dbj|AK061414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D05, full insert sequence Length = 1050 Score = 69.9 bits (35), Expect = 7e-09 Identities = 44/47 (93%) Strand = Plus / Plus Query: 249 ccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||| ||||||||||| | ||||||||||||||||||||||||||| Sbjct: 286 ccggctcggtgccgttcgtctgggagtcgcagcctggcacgcccaag 332
>gb|DQ429243.1| Sorghum bicolor voucher NSL51365 locus pSB0739 genomic sequence Length = 764 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 184 gctgctcaccagggacagctccgccgcggcgccgtccttccgggt 228 |||| |||||||||| |||||||| |||||||||||||||||||| Sbjct: 717 gctgttcaccagggagagctccgctgcggcgccgtccttccgggt 761
>ref|XM_470099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1965 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 247 cgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||||||| ||||||||||||||||||||| ||| || ||||||||| Sbjct: 338 cgccggcgccgtgccgttcctgtgggagtcgtcgccgggaacgcccaag 386
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 247 cgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||||||| ||||||||||||||||||||| ||| || ||||||||| Sbjct: 33930913 cgccggcgccgtgccgttcctgtgggagtcgtcgccgggaacgcccaag 33930961
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 247 cgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||||||| ||||||||||||||||||||| ||| || ||||||||| Sbjct: 34021385 cgccggcgccgtgccgttcctgtgggagtcgtcgccgggaacgcccaag 34021433
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 247 cgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||||||| ||||||||||||||||||||| ||| || ||||||||| Sbjct: 126778 cgccggcgccgtgccgttcctgtgggagtcgtcgccgggaacgcccaag 126730
>dbj|AK099739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090P21, full insert sequence Length = 2730 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 247 cgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaag 295 ||||||||| ||||||||||||||||||||| ||| || ||||||||| Sbjct: 360 cgccggcgccgtgccgttcctgtgggagtcgtcgccgggaacgcccaag 408
>gb|AY271140.1| Homo sapiens clone SKG02-A02 putative promoter sequence Length = 348 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 159 ggcaggggggcaggctcctctccaggctgc 188 |||||| ||||||||||||||||||||||| Sbjct: 202 ggcaggagggcaggctcctctccaggctgc 231
>gb|AY271107.1| Homo sapiens clone SKG01-E12 putative promoter sequence Length = 348 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 159 ggcaggggggcaggctcctctccaggctgc 188 |||||| ||||||||||||||||||||||| Sbjct: 147 ggcaggagggcaggctcctctccaggctgc 118
>gb|AY270858.1| Homo sapiens clone SKT05-F4 putative promoter sequence Length = 348 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 159 ggcaggggggcaggctcctctccaggctgc 188 |||||| ||||||||||||||||||||||| Sbjct: 147 ggcaggagggcaggctcctctccaggctgc 118
>dbj|AP002518.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete sequence Length = 164795 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 159 ggcaggggggcaggctcctctccaggctgc 188 |||||| ||||||||||||||||||||||| Sbjct: 53403 ggcaggagggcaggctcctctccaggctgc 53432
>ref|NM_192519.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1650 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 95 tccatggcggccaccgtcggcaac 118 |||||||||||||||||||||||| Sbjct: 1226 tccatggcggccaccgtcggcaac 1249
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 95 tccatggcggccaccgtcggcaac 118 |||||||||||||||||||||||| Sbjct: 78710 tccatggcggccaccgtcggcaac 78687
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 95 tccatggcggccaccgtcggcaac 118 |||||||||||||||||||||||| Sbjct: 19387 tccatggcggccaccgtcggcaac 19364
>ref|XM_477180.1| Oryza sativa (japonica cultivar-group), mRNA Length = 507 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Plus Query: 246 ccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||||||| | ||||||||| | |||||||| |||| ||||||||||||| Sbjct: 80 ccgccggcaccgtgccgttcgtctgggagtccaagcccggcacgcccaaga 130
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 345 actactccgccgccgccaagaag 367 ||||||||||||||||||||||| Sbjct: 56847 actactccgccgccgccaagaag 56869
>ref|XM_572734.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI00200) partial mRNA Length = 243 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 345 actactccgccgccgccaagaag 367 ||||||||||||||||||||||| Sbjct: 214 actactccgccgccgccaagaag 236
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Plus Query: 246 ccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||||||| | ||||||||| | |||||||| |||| ||||||||||||| Sbjct: 7301121 ccgccggcaccgtgccgttcgtctgggagtccaagcccggcacgcccaaga 7301171 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tcctcctcctctccaagactg 27 ||||||||||||||||||||| Sbjct: 26017621 tcctcctcctctccaagactg 26017601
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Plus Query: 246 ccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||||||| | ||||||||| | |||||||| |||| ||||||||||||| Sbjct: 27802 ccgccggcaccgtgccgttcgtctgggagtccaagcccggcacgcccaaga 27852
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 46.1 bits (23), Expect = 0.098 Identities = 44/51 (86%) Strand = Plus / Plus Query: 246 ccgccggcgcggtgccgttcctgtgggagtcgcagcctggcacgcccaaga 296 |||||||| | ||||||||| | |||||||| |||| ||||||||||||| Sbjct: 141605 ccgccggcaccgtgccgttcgtctgggagtccaagcccggcacgcccaaga 141655
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 197 gacagctccgccgcggcgccgt 218 |||||||||||||||||||||| Sbjct: 484491 gacagctccgccgcggcgccgt 484512
>ref|XM_482898.1| Oryza sativa (japonica cultivar-group), mRNA Length = 777 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 atccatggcggccaccgtcgg 114 ||||||||||||||||||||| Sbjct: 288 atccatggcggccaccgtcgg 308
>ref|XM_479779.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1425 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 cctactactccgccgccgcca 362 ||||||||||||||||||||| Sbjct: 1141 cctactactccgccgccgcca 1161
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 ctacggcgtgtcctccgccggcgcggtgc 260 |||||||||| || ||||||||||||||| Sbjct: 69299 ctacggcgtggccgccgccggcgcggtgc 69271
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 ctacggcgtgtcctccgccggcgcggtgc 260 |||||||||| || ||||||||||||||| Sbjct: 69288 ctacggcgtggccgccgccggcgcggtgc 69260
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 ctacggcgtgtcctccgccggcgcggtgc 260 |||||||||| || ||||||||||||||| Sbjct: 36969 ctacggcgtggccgccgccggcgcggtgc 36941
>emb|AJ720615.1| Gallus gallus mRNA for hypothetical protein, clone 21k5 Length = 1316 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 gctccgccgcggcgccgtcct 221 ||||||||||||||||||||| Sbjct: 148 gctccgccgcggcgccgtcct 128
>gb|AY929300.1| Pseudomonas putida MhaS (mhaS) and MhaR (mhaR) genes, complete cds Length = 4957 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 gcggtgccgttcctgtgggag 274 ||||||||||||||||||||| Sbjct: 76 gcggtgccgttcctgtgggag 96
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 gccatgccgccgctcacgccc 334 ||||||||||||||||||||| Sbjct: 810211 gccatgccgccgctcacgccc 810231
>emb|CR353363.1| Gallus gallus finished cDNA, clone ChEST279b21 Length = 599 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 gctccgccgcggcgccgtcct 221 ||||||||||||||||||||| Sbjct: 36 gctccgccgcggcgccgtcct 16
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 atccatggcggccaccgtcgg 114 ||||||||||||||||||||| Sbjct: 23224616 atccatggcggccaccgtcgg 23224596 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 cctactactccgccgccgcca 362 ||||||||||||||||||||| Sbjct: 851609 cctactactccgccgccgcca 851629
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 298 cgccgcctccgacaccgccatgccgccgc 326 ||||||| |||||||||||||| |||||| Sbjct: 6926620 cgccgccgccgacaccgccatggcgccgc 6926592
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 tccatccatccatggcggcca 107 ||||||||||||||||||||| Sbjct: 7062052 tccatccatccatggcggcca 7062072 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgacaccgccatgccgccgc 326 |||||||||||||||||||| Sbjct: 34443588 cgacaccgccatgccgccgc 34443607
>emb|BX934705.1| Gallus gallus finished cDNA, clone ChEST114n12 Length = 604 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 201 gctccgccgcggcgccgtcct 221 ||||||||||||||||||||| Sbjct: 41 gctccgccgcggcgccgtcct 21
>dbj|AP004693.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0461F06 Length = 147891 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 atccatggcggccaccgtcgg 114 ||||||||||||||||||||| Sbjct: 147715 atccatggcggccaccgtcgg 147695
>dbj|AP004306.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0506F02 Length = 151612 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tcctcctcctctccaagactg 27 ||||||||||||||||||||| Sbjct: 94633 tcctcctcctctccaagactg 94613
>dbj|AP004457.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0013B04 Length = 141319 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 atccatggcggccaccgtcgg 114 ||||||||||||||||||||| Sbjct: 23967 atccatggcggccaccgtcgg 23947
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 tcctcctcctctccaagactg 27 ||||||||||||||||||||| Sbjct: 51183 tcctcctcctctccaagactg 51163
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 tccatccatccatggcggcca 107 ||||||||||||||||||||| Sbjct: 65471 tccatccatccatggcggcca 65491
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 298 cgccgcctccgacaccgccatgccgccgc 326 ||||||| |||||||||||||| |||||| Sbjct: 116145 cgccgccgccgacaccgccatggcgccgc 116117
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 cctactactccgccgccgcca 362 ||||||||||||||||||||| Sbjct: 14347 cctactactccgccgccgcca 14367
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 cctactactccgccgccgcca 362 ||||||||||||||||||||| Sbjct: 150829 cctactactccgccgccgcca 150849
>dbj|AK109860.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-G11, full insert sequence Length = 1425 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 cctactactccgccgccgcca 362 ||||||||||||||||||||| Sbjct: 1141 cctactactccgccgccgcca 1161
>dbj|AK063118.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E04, full insert sequence Length = 586 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 298 cgccgcctccgacaccgccatgccgccgc 326 ||||||| |||||||||||||| |||||| Sbjct: 102 cgccgccgccgacaccgccatggcgccgc 74
>ref|XM_468296.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2787 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgacaccgccatgccgccgc 326 |||||||||||||||||||| Sbjct: 309 cgacaccgccatgccgccgc 290
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 caagggcaaggccgccgggg 398 |||||||||||||||||||| Sbjct: 2895188 caagggcaaggccgccgggg 2895207
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 352 cgccgccgccaagaagcacgcgccgcgc 379 ||||||||||||| | |||||||||||| Sbjct: 718416 cgccgccgccaagcaccacgcgccgcgc 718389
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 cgccgtccttccgggtctac 232 |||||||||||||||||||| Sbjct: 11188 cgccgtccttccgggtctac 11207
>ref|XM_849756.1| PREDICTED: Canis familiaris similar to phosphatase and actin regulator 3 isoform 1 (LOC612028), mRNA Length = 2724 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ggcaaggacagggaggaggc 138 |||||||||||||||||||| Sbjct: 1489 ggcaaggacagggaggaggc 1508
>gb|AF481793.1| Streptomyces sp. SMA5 3-hydroxy-3-methylglutaryl coenzyme A reductase gene, partial cds Length = 774 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 caccgtcggcaacggcaagg 125 |||||||||||||||||||| Sbjct: 664 caccgtcggcaacggcaagg 683
>gb|AF481792.1| Streptomyces sp. SMA64 3-hydroxy-3-methylglutaryl coenzyme A reductase gene, partial cds Length = 658 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 caccgtcggcaacggcaagg 125 |||||||||||||||||||| Sbjct: 548 caccgtcggcaacggcaagg 567
>emb|AL683834.9| Human DNA sequence from clone RP11-159F17 on chromosome 10 Contains part of the GRID1 gene for glutamate receptor (ionotropic) delta 1, complete sequence Length = 106580 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 cctcctcctctccaagactg 27 |||||||||||||||||||| Sbjct: 31446 cctcctcctctccaagactg 31427
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ccggcgcggtgccgttcctg 268 |||||||||||||||||||| Sbjct: 961855 ccggcgcggtgccgttcctg 961836
>gb|AC093323.3| Homo sapiens BAC clone RP11-539L10 from 4, complete sequence Length = 195576 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ggggcaggctcctctccagg 184 |||||||||||||||||||| Sbjct: 195233 ggggcaggctcctctccagg 195252
>gb|CP000268.1| Rhodoferax ferrireducens DSM 15236 plasmid1, complete sequence Length = 257447 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 tcctgggctccatcctcatggcga 446 ||||| |||||||||||||||||| Sbjct: 129433 tcctgtgctccatcctcatggcga 129456
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gcctccgacaccgccatgccgccg 325 |||||||||||| ||||||||||| Sbjct: 979129 gcctccgacacctccatgccgccg 979152
>gb|AC106732.2| Homo sapiens chromosome 5 clone CTD-2275D24, complete sequence Length = 119012 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 catcctgggctccatcctcatggc 444 |||||||||||| ||||||||||| Sbjct: 114637 catcctgggctctatcctcatggc 114660
>gb|AC091892.2| Homo sapiens chromosome 5 clone RP11-12G11, complete sequence Length = 19935 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 catcctgggctccatcctcatggc 444 |||||||||||| ||||||||||| Sbjct: 8659 catcctgggctctatcctcatggc 8682
>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome Length = 305107 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cttcctcctcctctccaaga 24 |||||||||||||||||||| Sbjct: 8933 cttcctcctcctctccaaga 8952
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgacaccgccatgccgccgc 326 |||||||||||||||||||| Sbjct: 61611 cgacaccgccatgccgccgc 61592
>gb|AC026697.6| Homo sapiens chromosome 5 clone CTC-419K13, complete sequence Length = 110965 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 catcctgggctccatcctcatggc 444 |||||||||||| ||||||||||| Sbjct: 5666 catcctgggctctatcctcatggc 5689
>gb|AC134920.3| Homo sapiens BAC clone RP13-544G15 from 4, complete sequence Length = 74312 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ggggcaggctcctctccagg 184 |||||||||||||||||||| Sbjct: 71975 ggggcaggctcctctccagg 71994
>gb|AF369029.2| White spot syndrome virus, complete genome Length = 292967 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cttcctcctcctctccaaga 24 |||||||||||||||||||| Sbjct: 57889 cttcctcctcctctccaaga 57908
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 gccgccgccaagaagcacgcgccg 376 |||||| ||||||||||||||||| Sbjct: 4974595 gccgcccccaagaagcacgcgccg 4974572
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 cgccggcgcggtgccgttcc 266 |||||||||||||||||||| Sbjct: 4417373 cgccggcgcggtgccgttcc 4417354 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gctccgccgcggcgccgtcc 220 |||||||||||||||||||| Sbjct: 217738 gctccgccgcggcgccgtcc 217719
>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_C07 Length = 115190 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgacaccgccatgccgccgc 326 |||||||||||||||||||| Sbjct: 59830 cgacaccgccatgccgccgc 59849
>dbj|AB113568.1| Actinoplanes sp. A40644 mevalonate pathway genes and BE-40644 biosynthetic genes, complete cds Length = 22478 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 caccgtcggcaacggcaagg 125 |||||||||||||||||||| Sbjct: 6537 caccgtcggcaacggcaagg 6556
>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome Length = 307287 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cttcctcctcctctccaaga 24 |||||||||||||||||||| Sbjct: 42521 cttcctcctcctctccaaga 42540
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ctccgacaccgccatgccgc 323 |||||||||||||||||||| Sbjct: 3654026 ctccgacaccgccatgccgc 3654007 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ccgccggcgcggtgccgttc 265 |||||||||||||||||||| Sbjct: 3397234 ccgccggcgcggtgccgttc 3397215
>emb|AJ968949.1| Lubomirskia baicalensis mRNA for cathepsin L2 (catl2a gene) Length = 1126 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 acgcgccgcgcaagggcaag 388 |||||||||||||||||||| Sbjct: 327 acgcgccgcgcaagggcaag 346
>dbj|AP003555.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-626H12, complete sequence Length = 121600 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caggggggcaggctcctctc 180 |||||||||||||||||||| Sbjct: 36600 caggggggcaggctcctctc 36581
>emb|AL713913.10| Mouse DNA sequence from clone RP23-125F10 on chromosome 2, complete sequence Length = 190485 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ccaggctgctcaccagggac 199 |||||||||||||||||||| Sbjct: 98874 ccaggctgctcaccagggac 98893
>emb|AJ272238.1|NCO272238 Nycticebus coucang partial cryaa gene for alphaA-crystallin, exon 2 Length = 444 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gggcaggctcctctccaggc 185 |||||||||||||||||||| Sbjct: 234 gggcaggctcctctccaggc 215
>dbj|AB003161.1| Corynebacterium ammoniagenes purD, purB, purC genes, complete cds Length = 4369 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ctactccgccgccgccaaga 365 |||||||||||||||||||| Sbjct: 3914 ctactccgccgccgccaaga 3933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,121,595 Number of Sequences: 3902068 Number of extensions: 5121595 Number of successful extensions: 130434 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127698 Number of HSP's gapped (non-prelim): 2730 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
