ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet11a01 |
|---|---|
| Clone Library Name | barley_pub |
>LRC34_HUMAN (Q8IZ02) Leucine-rich repeat-containing protein 34| Length = 419 Score = 31.6 bits (70), Expect = 0.81 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +1 Query: 46 SNLVQSGGNMGDQSTLITGY-FAHAFLW--KTSELTCVLRHFIVVCNELLYGNTDVERFV 216 SN ++ G + ++ T F+H ++W K E TC+ ++ L NTDVE FV Sbjct: 315 SNNIEGEGLVALSQSMKTNLTFSHIYIWGNKFDEATCITYSDLIQMGCLKPDNTDVEPFV 374 Query: 217 LEVSLTLDWILN 252 ++ + L + N Sbjct: 375 VDGRVYLAEVSN 386
>CYB6_SKECO (O96801) Cytochrome b6| Length = 215 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +1 Query: 52 LVQSGGNMGDQSTLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYG 192 LV GG QSTL Y AH F+ + +L HF+++ + + G Sbjct: 167 LVLRGGESVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISG 213
>CYB6_ODOSI (P49488) Cytochrome b6| Length = 215 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +1 Query: 52 LVQSGGNMGDQSTLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYG 192 LV GG QSTL Y AH F+ + +L HF+++ + + G Sbjct: 167 LVLRGGESVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISG 213
>GSPL_KLEPN (P15751) General secretion pathway protein L (Pullulanase secretion| protein pulL) Length = 398 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = -2 Query: 415 TSARCLECWVHLCHLWFGLLF--VWLQQLHAHHCYLNPNA 302 ++ RC E W+ C W G+ VWL QL H L P A Sbjct: 154 SAVRCGEQWLFRCDTWGGMAVETVWLDQLLTHWQDLAPIA 193
>RAVA_SALTY (Q8ZKW2) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 231 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 142 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>RAVA_SALTI (Q8Z2R1) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 231 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 142 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>RAVA_SALPA (Q5PJX8) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 231 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 142 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>RAVA_SALCH (Q57HW4) ATPase ravA (EC 3.6.3.-) (Regulatory ATPase variant A)| Length = 498 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 231 EAHFKNKSFDISVPIQKLIAYDNEVSQYTS 142 E HF+N +F+ +P++ L+A NE+ + S Sbjct: 133 ERHFRNGAFEEKIPMRLLVAASNELPEADS 162
>GUNB_RUMAL (P23661) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGB) Length = 409 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 16 VIQRSSKDYSSNLVQSGGNMGDQSTLITGYFA 111 +I K + + SGGN GD+ +ITGY A Sbjct: 231 IINEYEKAFVETVRASGGNNGDRCLMITGYAA 262
>GUN1_RUMAL (P16216) Endoglucanase 1 precursor (EC 3.2.1.4) (Endoglucanase I)| (Endo-1,4-beta-glucanase) (Cellulase) (EG-I) Length = 406 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 16 VIQRSSKDYSSNLVQSGGNMGDQSTLITGYFA 111 +I K + + SGGN GD+ +ITGY A Sbjct: 229 IINEYEKAFVETVRASGGNNGDRCLMITGYAA 260
>TEKT1_MOUSE (Q9DAJ2) Tektin-1| Length = 418 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = -1 Query: 242 QSSVRLTSRTNLSTSVFPYRSSLHTTMKC---RSTQVSSDVFH 123 Q+ LT +T L S+ Y+ LH T KC R +V D+ H Sbjct: 87 QTDDLLTYKTRLERSLESYKEPLHITEKCLEYREKRVGIDLVH 129
>YR789_MIMIV (Q5UQ06) Putative ankyrin repeat protein R789| Length = 422 Score = 28.5 bits (62), Expect = 6.9 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 24/111 (21%) Frame = +1 Query: 7 VEGVIQRSSKDYSSNLVQS-------GGNMGDQSTLITGYFAHAF--------------- 120 V+ ++ S+K+Y SN++ + GG+M L+ +H F Sbjct: 166 VKNLLYTSTKNYFSNVIDASLVYAARGGSMDILMYLLELGASHNFAIICASIHGQLDVVK 225 Query: 121 --LWKTSELTCVLRHFIVVCNELLYGNTDVERFVLEVSLTLDWILNHCFSL 267 L K E T + + I++ + YG +V ++++E LD L++C + Sbjct: 226 YLLQKGQEYTTKIEYCIIMAAQ--YGQVNVVKYLIESGNELDHNLDYCLKV 274
>CYB6_PROMP (Q7V2X6) Cytochrome b6| Length = 218 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +1 Query: 37 DYSSNLVQSGGNMGDQSTLITGYFAHAFLWKTSELTCVLRHFIVVCNELLYG 192 D+ L++ G ++G QSTL Y H F+ S +L HF+++ + + G Sbjct: 166 DFMVELLRGGESVG-QSTLTRFYSLHTFVLPWSLAVFMLMHFLMIRKQGISG 216
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +1 Query: 289 ETIIKH-LDLDSSDGHEAVA-AKQIGVQTINGIDEPSTPNSVQMSLV 423 E ++KH ++L + EA A +I V+ ++ ++ TP S+ MSLV Sbjct: 88 ENVVKHFIELANKRVQEAQEKADKISVEYVDDLEATETPESIMMSLV 134
>RB3GP_BRARE (Q6NUV0) Rab3 GTPase-activating protein catalytic subunit| Length = 969 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -1 Query: 356 ICLAATASCPSLLSKSKCFMIVSLIS----DTSCSEKQWFSIQSSVR 228 + ++ A+C +++S+SKC +++S +S +T C + IQ R Sbjct: 128 VVISPGANCEAIISESKCSLLLSSVSIALANTGCQVPLFVQIQQKHR 174 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,025,635 Number of Sequences: 219361 Number of extensions: 1181702 Number of successful extensions: 3323 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3322 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
