Clone Information

BLAST Search Result

Clone Name	baet119h09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_192099.1\| Oryza sativa (japonica cultivar-group), predic...	40	0.41
2	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	0.41
3	dbj\|AP003452.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	0.41
4	dbj\|AP003455.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	0.41
5	dbj\|AK121587.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	0.41
6	dbj\|AK098893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	0.41
7	dbj\|AK098877.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	0.41
8	dbj\|AK060428.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	0.41
9	dbj\|D38231.1\|RICGPBSLP Oryza sativa (japonica cultivar-group) RW...	40	0.41
10	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	0.41
11	gb\|AC128597.3\| Rattus norvegicus BAC CH230-62C6 (Children's Hos...	38	1.6
12	gb\|AE017283.1\| Propionibacterium acnes KPA171202, complete genome	38	1.6
13	emb\|AL592430.8\| Human DNA sequence from clone RP11-388P9 on chro...	38	1.6
14	emb\|AL354919.16\| Human DNA sequence from clone RP11-84A19 on chr...	38	1.6
15	gb\|AC112406.5\| Rattus norvegicus 11 BAC CH230-329D3 (Children's ...	38	1.6
16	dbj\|AB197699.1\| Felis catus EDN2 mRNA for preproendothelin-2, co...	38	1.6
17	ref\|NM_001009387.1\| Felis catus endothelin 2 (EDN2), mRNA	38	1.6
18	gb\|AC092235.1\|AC092235 Drosophila melanogaster, chromosome 2L, r...	38	1.6
19	gb\|AC018994.7\|AC018994 Homo sapiens chromosome 18, clone RP11-61...	38	1.6
20	gb\|AE003588.3\| Drosophila melanogaster chromosome 2L, section 3 ...	38	1.6
21	gb\|AC140839.9\| Mus musculus chromosome 3, clone RP24-316D12, com...	38	1.6
22	gb\|AC004420.1\|AC004420 Drosophila melanogaster DNA sequence (P1 ...	38	1.6
23	gb\|AC022002.5\| Homo sapiens chromosome 3 clone RP11-198P17 map 3...	38	1.6
24	ref\|XM_525666.1\| PREDICTED: Pan troglodytes similar to Hypotheti...	36	6.4
25	gb\|BT018922.1\| Zea mays clone Contig31.F mRNA sequence	36	6.4
26	gb\|AC161799.5\| Mus musculus chromosome 15, clone RP23-304B13, co...	36	6.4
27	gb\|AE017341.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	36	6.4
28	gb\|AC104514.2\| Drosophila melanogaster clone BACR22L21, complete...	36	6.4
29	gb\|AC092189.3\| Drosophila melanogaster clone BACR34M11, complete...	36	6.4
30	gb\|AC009909.6\| Drosophila melanogaster clone BACR30P05, complete...	36	6.4
31	ref\|XM_675569.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	36	6.4
32	gb\|AC113470.14\| Mus musculus chromosome 9, clone RP23-262N17, co...	36	6.4
33	ref\|XM_566673.1\| Cryptococcus neoformans var. neoformans JEC21 h...	36	6.4
34	gb\|AF480884.1\| Chimpanzee cytomegalovirus, complete genome	36	6.4
35	gb\|AC004885.2\| Homo sapiens PAC clone RP4-781A18 from 7, complet...	36	6.4
36	gb\|AC092496.3\| Bos taurus clone RP42-394P20, complete sequence	36	6.4
37	emb\|AL160269.14\| Human DNA sequence from clone RP11-240L7 on chr...	36	6.4
38	emb\|AL139331.19\| Human DNA sequence from clone RP11-328M4 on chr...	36	6.4
39	gb\|AY341031.1\| Homo sapiens hydroxysteroid (17-beta) dehydrogena...	36	6.4
40	emb\|AL031010.1\|HS422F24 Human DNA sequence from clone RP3-422F24...	36	6.4
41	gb\|AC095904.7\| Rattus norvegicus 9 BAC CH230-10L20 (Children's H...	36	6.4
42	emb\|AL646097.25\| Mouse DNA sequence from clone RP23-338M9 on chr...	36	6.4
43	gb\|AC016397.6\| Homo sapiens chromosome 10 clone RP11-541M12, com...	36	6.4
44	ref\|NM_137439.1\| Drosophila melanogaster CG5767-RA (CG5767), mRNA	36	6.4
45	gb\|AC016399.9\| Homo sapiens chromosome 10 clone RP11-70E21, comp...	36	6.4
46	gb\|AC099039.1\| Drosophila melanogaster, chromosome 2R, region 55...	36	6.4
47	gb\|AC159504.5\| Mus musculus 10 BAC RP23-302J6 (Roswell Park Canc...	36	6.4
48	gb\|AC155636.3\| Mus musculus BAC clone RP23-345F5 from chromosome...	36	6.4
49	gb\|AC024022.6\| Homo sapiens BAC clone RP11-63A11 from 4, complet...	36	6.4
50	gb\|AC116609.6\| Homo sapiens BAC clone RP13-539J13 from 2, comple...	36	6.4
51	gb\|AF263283.1\|AF263283 Filobasidiella neoformans var. neoformans...	36	6.4
52	dbj\|BA000043.1\| Geobacillus kaustophilus HTA426 DNA, complete ge...	36	6.4
53	gb\|AC068564.1\|AC068564 Filobasidiella neoformans, complete sequence	36	6.4
54	gb\|AC002073.1\|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q2...	36	6.4
55	gb\|DQ339483.1\| Pseudomonas chlororaphis strain PCL1391 putative ...	36	6.4
56	gb\|AE003801.4\| Drosophila melanogaster chromosome 2R, section 49...	36	6.4
57	gb\|AE003582.4\| Drosophila melanogaster chromosome 2L, section 9 ...	36	6.4
58	gb\|AC137896.5\| Homo sapiens chromosome 17, clone RP11-765O14, co...	36	6.4
59	gb\|AC004293.1\|AC004293 Drosophila melanogaster DNA sequence (P1 ...	36	6.4
60	gb\|AC003055.1\|AC003055 Drosophila melanogaster (P1 DS06332 (D91)...	36	6.4

>ref|NM_192099.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   tgggacctcaccaaccccatccag 26
           |||||||||||||||||| |||||
Sbjct: 136 tgggacctcaccaaccccgtccag 159

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 3        tgggacctcaccaaccccatccag 26
                |||||||||||||||||| |||||
Sbjct: 28324290 tgggacctcaccaaccccgtccag 28324313

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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0478H03
          Length = 167560

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 3      tgggacctcaccaaccccatccag 26
              |||||||||||||||||| |||||
Sbjct: 158797 tgggacctcaccaaccccgtccag 158820

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>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0519D04
          Length = 193068

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     tgggacctcaccaaccccatccag 26
             |||||||||||||||||| |||||
Sbjct: 39390 tgggacctcaccaaccccgtccag 39413

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>dbj|AK121587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037K24, full
           insert sequence
          Length = 1358

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   tgggacctcaccaaccccatccag 26
           |||||||||||||||||| |||||
Sbjct: 234 tgggacctcaccaaccccgtccag 257

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>dbj|AK098893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N15, full
           insert sequence
          Length = 1256

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   tgggacctcaccaaccccatccag 26
           |||||||||||||||||| |||||
Sbjct: 205 tgggacctcaccaaccccgtccag 228

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>dbj|AK098877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E12, full
           insert sequence
          Length = 1326

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   tgggacctcaccaaccccatccag 26
           |||||||||||||||||| |||||
Sbjct: 222 tgggacctcaccaaccccgtccag 245

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>dbj|AK060428.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A02, full
           insert sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   tgggacctcaccaaccccatccag 26
           |||||||||||||||||| |||||
Sbjct: 228 tgggacctcaccaaccccgtccag 251

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>dbj|D38231.1|RICGPBSLP Oryza sativa (japonica cultivar-group) RWD mRNA for q group of
           receptor for activated C-kinase, complete cds
          Length = 1285

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   tgggacctcaccaaccccatccag 26
           |||||||||||||||||| |||||
Sbjct: 162 tgggacctcaccaaccccgtccag 185

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      caggccacccaggacaccag 43
               ||||||||||||||||||||
Sbjct: 1735722 caggccacccaggacaccag 1735703

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>gb|AC128597.3| Rattus norvegicus  BAC CH230-62C6 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 198520

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     ccaggccacccaggacacc 41
              |||||||||||||||||||
Sbjct: 142168 ccaggccacccaggacacc 142150

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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 10      tcaccaaccccatccaggc 28
               |||||||||||||||||||
Sbjct: 1803926 tcaccaaccccatccaggc 1803944

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>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 10     tcaccaaccccatccaggccacc 32
              |||||| ||||||||||||||||
Sbjct: 111783 tcaccacccccatccaggccacc 111761

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>emb|AL354919.16| Human DNA sequence from clone RP11-84A19 on chromosome 1 Contains the
             5' end of the BAI2 gene for brain-specific angiogenesis
             inhibitor 2, the gene for a novel protein (FLJ33697,
             FLJ25348, FLJ39908, FLJ25348, FLJ38510, FLJ38873), a novel
             gene (FLJ46627) and three CpG islands, complete sequence
          Length = 124413

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    cacccaggacaccagctcc 47
             |||||||||||||||||||
Sbjct: 67980 cacccaggacaccagctcc 67962

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>gb|AC112406.5| Rattus norvegicus 11 BAC CH230-329D3 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 182245

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 23   ccaggccacccaggacacc 41
            |||||||||||||||||||
Sbjct: 2520 ccaggccacccaggacacc 2502

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>dbj|AB197699.1| Felis catus EDN2 mRNA for preproendothelin-2, complete cds
          Length = 1214

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   ggccacccaggacaccagc 44
            |||||||||||||||||||
Sbjct: 1000 ggccacccaggacaccagc 982

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>ref|NM_001009387.1| Felis catus endothelin 2 (EDN2), mRNA
          Length = 1214

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 26   ggccacccaggacaccagc 44
            |||||||||||||||||||
Sbjct: 1000 ggccacccaggacaccagc 982

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>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone
              BACR30G21, complete sequence
          Length = 168370

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 19     ccatccaggccacccaggacacc 41
              ||||||||||||||||| |||||
Sbjct: 120307 ccatccaggccacccagaacacc 120329

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>gb|AC018994.7|AC018994 Homo sapiens chromosome 18, clone RP11-619L19, complete sequence
          Length = 166451

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      gacctcaccaaccccatcc 24
              |||||||||||||||||||
Sbjct: 101546 gacctcaccaaccccatcc 101564

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>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete
              sequence
          Length = 308447

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 19     ccatccaggccacccaggacacc 41
              ||||||||||||||||| |||||
Sbjct: 157430 ccatccaggccacccagaacacc 157452

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>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence
          Length = 168722

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    ccacccaggacaccagctc 46
             |||||||||||||||||||
Sbjct: 96836 ccacccaggacaccagctc 96818

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>gb|AC004420.1|AC004420 Drosophila melanogaster DNA sequence (P1 DS02649 (D132)), complete
             sequence
          Length = 79987

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    ccatccaggccacccaggacacc 41
             ||||||||||||||||| |||||
Sbjct: 47044 ccatccaggccacccagaacacc 47022

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>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence
          Length = 189097

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      acctcaccaaccccatcca 25
              |||||||||||||||||||
Sbjct: 106440 acctcaccaaccccatcca 106458

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>ref|XM_525666.1| PREDICTED: Pan troglodytes similar to Hypothetical protein CBG10116
            (LOC470283), mRNA
          Length = 3234

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 28   ccacccaggacaccagct 45
            ||||||||||||||||||
Sbjct: 2052 ccacccaggacaccagct 2069

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>gb|BT018922.1| Zea mays clone Contig31.F mRNA sequence
          Length = 1367

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 6   gacctcaccaaccccatc 23
           ||||||||||||||||||
Sbjct: 902 gacctcaccaaccccatc 919

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>gb|AC161799.5| Mus musculus chromosome 15, clone RP23-304B13, complete sequence
          Length = 188284

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 28     ccacccaggacaccagct 45
              ||||||||||||||||||
Sbjct: 133458 ccacccaggacaccagct 133475

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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
              sequence
          Length = 2300533

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     caaccccatccaggccac 31
              ||||||||||||||||||
Sbjct: 709927 caaccccatccaggccac 709910

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>gb|AC104514.2| Drosophila melanogaster clone BACR22L21, complete sequence
          Length = 170718

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 20     catccaggccacccaggacacc 41
              ||||||||||| ||||||||||
Sbjct: 167373 catccaggccatccaggacacc 167352

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>gb|AC092189.3| Drosophila melanogaster clone BACR34M11, complete sequence
          Length = 168540

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 18     cccatccaggccacccag 35
              ||||||||||||||||||
Sbjct: 146011 cccatccaggccacccag 146028

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>gb|AC009909.6| Drosophila melanogaster clone BACR30P05, complete sequence
          Length = 171772

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 18   cccatccaggccacccag 35
            ||||||||||||||||||
Sbjct: 3281 cccatccaggccacccag 3298

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>ref|XM_675569.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7392.2), mRNA
          Length = 1488

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 18  cccatccaggccacccag 35
           ||||||||||||||||||
Sbjct: 726 cccatccaggccacccag 709

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>gb|AC113470.14| Mus musculus chromosome 9, clone RP23-262N17, complete sequence
          Length = 202838

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     acccaggacaccagctcc 47
              ||||||||||||||||||
Sbjct: 107790 acccaggacaccagctcc 107807

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>ref|XM_566673.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNA02730) partial mRNA
          Length = 4011

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   caaccccatccaggccac 31
            ||||||||||||||||||
Sbjct: 3524 caaccccatccaggccac 3541

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>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 20     catccaggccacccaggacaccagct 45
              ||||||||||| ||||| ||||||||
Sbjct: 217103 catccaggccatccaggccaccagct 217128

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>gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complete sequence
          Length = 190842

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 26     ggccacccaggacaccagctcc 47
              |||| |||||||||||||||||
Sbjct: 163641 ggcctcccaggacaccagctcc 163662

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>gb|AC092496.3| Bos taurus clone RP42-394P20, complete sequence
          Length = 216538

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 24   caggccacccaggacacc 41
            ||||||||||||||||||
Sbjct: 3997 caggccacccaggacacc 4014

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>emb|AL160269.14| Human DNA sequence from clone RP11-240L7 on chromosome 9 Contains the 3'
              end of a gene for a novel protein similar to a zinc finger
              protein, the gene for a nucleotide-sugar transporter
              (SQV7L) the HSD17B3 gene for hydroxysteroid (17-beta)
              dehydrogenase 3, 2 novel genes and two CpG islands,
              complete sequence
          Length = 169646

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     gccacccaggacaccagc 44
              ||||||||||||||||||
Sbjct: 148877 gccacccaggacaccagc 148860

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>emb|AL139331.19| Human DNA sequence from clone RP11-328M4 on chromosome 6 Contains a
             novel gene,  the FOXP4 gene for forkhead box P4 and five
             CpG islands, complete sequence
          Length = 180547

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 26    ggccacccaggacaccagctcc 47
             ||||||||||||| ||||||||
Sbjct: 94934 ggccacccaggaccccagctcc 94913

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>gb|AY341031.1| Homo sapiens hydroxysteroid (17-beta) dehydrogenase 3 (HSD17B3) gene,
             complete cds
          Length = 69749

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    gccacccaggacaccagc 44
             ||||||||||||||||||
Sbjct: 63957 gccacccaggacaccagc 63940

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>emb|AL031010.1|HS422F24 Human DNA sequence from clone RP3-422F24 on chromosome 6q24.1-25.2
              Contains the C6orf71 gene and a signal sequence receptor,
              alpha (translocon-associated protein alpha) (SSR1) (TRAPA)
              pseudogene, complete sequence
          Length = 107159

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 9      ctcaccaaccccatccag 26
              ||||||||||||||||||
Sbjct: 101845 ctcaccaaccccatccag 101828

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>gb|AC095904.7| Rattus norvegicus 9 BAC CH230-10L20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 212732

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 9     ctcaccaaccccatccag 26
             ||||||||||||||||||
Sbjct: 80388 ctcaccaaccccatccag 80371

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>emb|AL646097.25| Mouse DNA sequence from clone RP23-338M9 on chromosome 11 Contains the 3'
              end of the Gas7 gene for growth arrest specific 7, the
              Rcvrn gene for recoverin, the Glp2r gene for glucagon-like
              peptide 2 receptor, a novel gene and the gene for a novel
              protein (1110001P11Rik), complete sequence
          Length = 212636

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 32     ccaggacaccagctccga 49
              ||||||||||||||||||
Sbjct: 121645 ccaggacaccagctccga 121628

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>gb|AC016397.6| Homo sapiens chromosome 10 clone RP11-541M12, complete sequence
          Length = 206909

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     accccatccaggccaccc 33
              ||||||||||||||||||
Sbjct: 152193 accccatccaggccaccc 152176

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>ref|NM_137439.1| Drosophila melanogaster CG5767-RA (CG5767), mRNA
          Length = 782

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 20  catccaggccacccaggacacc 41
           ||||||||||| ||||||||||
Sbjct: 473 catccaggccatccaggacacc 494

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>gb|AC016399.9| Homo sapiens chromosome 10 clone RP11-70E21, complete sequence
          Length = 173239

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 16     accccatccaggccaccc 33
              ||||||||||||||||||
Sbjct: 136304 accccatccaggccaccc 136321

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>gb|AC099039.1| Drosophila melanogaster, chromosome 2R, region 55A-55B, BAC clone
              BACR33K09, complete sequence
          Length = 162492

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 20     catccaggccacccaggacacc 41
              ||||||||||| ||||||||||
Sbjct: 133850 catccaggccatccaggacacc 133871

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>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201259

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 22    tccaggccacccaggaca 39
             ||||||||||||||||||
Sbjct: 94375 tccaggccacccaggaca 94392

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>gb|AC155636.3| Mus musculus BAC clone RP23-345F5 from chromosome 17, complete sequence
          Length = 223528

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    cccatccaggccacccag 35
             ||||||||||||||||||
Sbjct: 91042 cccatccaggccacccag 91025

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>gb|AC024022.6| Homo sapiens BAC clone RP11-63A11 from 4, complete sequence
          Length = 186755

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     gacctcaccaaccccatc 23
             ||||||||||||||||||
Sbjct: 13058 gacctcaccaaccccatc 13041

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>gb|AC116609.6| Homo sapiens BAC clone RP13-539J13 from 2, complete sequence
          Length = 131423

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    ccacccaggacaccagct 45
             ||||||||||||||||||
Sbjct: 43658 ccacccaggacaccagct 43675

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>gb|AF263283.1|AF263283 Filobasidiella neoformans var. neoformans clone CRYP02, complete
             sequence
          Length = 93593

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    caaccccatccaggccac 31
             ||||||||||||||||||
Sbjct: 56439 caaccccatccaggccac 56422

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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 6       gacctcaccaaccccatc 23
               ||||||||||||||||||
Sbjct: 1884828 gacctcaccaaccccatc 1884845

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>gb|AC068564.1|AC068564 Filobasidiella neoformans, complete sequence
          Length = 93979

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    caaccccatccaggccac 31
             ||||||||||||||||||
Sbjct: 56610 caaccccatccaggccac 56593

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>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence
          Length = 128978

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     ggccacccaggacaccag 43
              ||||||||||||||||||
Sbjct: 121363 ggccacccaggacaccag 121346

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>gb|DQ339483.1| Pseudomonas chlororaphis strain PCL1391 putative DNA-binding heavy
            metal response regulator gene, partial cds; and
            copper-binding protein (cop), inducer of phenazine
            production (ippA), and hypothetical protein genes,
            complete cds
          Length = 2270

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   gccacccaggacaccagc 44
            ||||||||||||||||||
Sbjct: 2010 gccacccaggacaccagc 1993

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>gb|AE003801.4| Drosophila melanogaster chromosome 2R, section 49 of 73 of the complete
              sequence
          Length = 254899

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 20     catccaggccacccaggacacc 41
              ||||||||||| ||||||||||
Sbjct: 244495 catccaggccatccaggacacc 244474

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>gb|AE003582.4| Drosophila melanogaster chromosome 2L, section 9 of 83 of the complete
             sequence
          Length = 295132

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    cccatccaggccacccag 35
             ||||||||||||||||||
Sbjct: 26139 cccatccaggccacccag 26156

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>gb|AC137896.5| Homo sapiens chromosome 17, clone RP11-765O14, complete sequence
          Length = 107289

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 11    caccaaccccatccaggccacccagg 36
             |||||||||||||||| || ||||||
Sbjct: 48746 caccaaccccatccagtcctcccagg 48771

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>gb|AC004293.1|AC004293 Drosophila melanogaster DNA sequence (P1 DS08109 (D176)), complete
             sequence
          Length = 79559

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 20    catccaggccacccaggacacc 41
             ||||||||||| ||||||||||
Sbjct: 49953 catccaggccatccaggacacc 49932

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>gb|AC003055.1|AC003055 Drosophila melanogaster (P1 DS06332 (D91)) DNA sequence, complete
            sequence
          Length = 73076

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 18   cccatccaggccacccag 35
            ||||||||||||||||||
Sbjct: 9745 cccatccaggccacccag 9728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 442,187
Number of Sequences: 3902068
Number of extensions: 442187
Number of successful extensions: 110129
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109903
Number of HSP's gapped (non-prelim): 226
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result