ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet119h07 |
|---|---|
| Clone Library Name | barley_pub |
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 33.5 bits (75), Expect = 0.24 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 6/77 (7%) Frame = -1 Query: 341 APKKPRGR------LHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSP 180 AP+ RGR +H P R SP RD G GG GK SP + Sbjct: 226 APRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEE--RGGGGKPPLGSPRATD 283 Query: 179 EKKQTGAGQFGRPNKRL 129 + GAG RP +R+ Sbjct: 284 GNRDPGAGVPARPGRRM 300
>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)| Length = 415 Score = 31.2 bits (69), Expect = 1.2 Identities = 25/87 (28%), Positives = 37/87 (42%) Frame = -1 Query: 368 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 189 G+ + +GAP P G+ ++ P P P P S AG P TG P Sbjct: 299 GQAPPKASGAP--PSGQ---QRQGPPQKPPGPAGPTRQASQAGPMPRTG---------PP 344 Query: 188 LSPEKKQTGAGQFGRPNKRLVVEGNSQ 108 + + + +G G GRP K + + SQ Sbjct: 345 TTQQPRPSGPGPAGRPAKPQLAQKPSQ 371
>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) (CP4) Length = 374 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/66 (30%), Positives = 27/66 (40%) Frame = -1 Query: 329 PRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQF 150 PRG + N P P+ R L+ P G ++G AGK P KQ G Sbjct: 79 PRGPVGPKGENGSAGEPGPKGERGLVGPPGSPGISGPAGKE-------GPSGKQGNIGPQ 131 Query: 149 GRPNKR 132 G+P + Sbjct: 132 GKPGPK 137
>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2164 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1 Query: 353 EEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGA 216 ++ G PK + R H H + HH P+P+ R A RP TG A Sbjct: 2101 QDRGRPKDRKHRPHHHHHHHHHHPPAPDRDR----YAQERPDTGRA 2142
>PCNT_MOUSE (P48725) Pericentrin| Length = 1920 Score = 30.8 bits (68), Expect = 1.6 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = -1 Query: 374 HGGELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRD--LLSPAGRRPLTGGAGKVSY 201 H G L+ EEA P++ R + SPEV R L P PLT G G VS Sbjct: 1831 HSGSLLPEEAAEPQQDPVRALDLS-----SWSSPEVVRKDPSLEPQHSLPLTPGVGTVSL 1885 Query: 200 SSPLLSPE 177 S +SP+ Sbjct: 1886 HSVDISPD 1893
>DPP6_BOVIN (P42659) Dipeptidyl aminopeptidase-like protein 6| (Dipeptidylpeptidase VI) (Dipeptidylpeptidase 6) (Dipeptidyl peptidase IV-like protein) (Dipeptidyl aminopeptidase-related protein) (DPPX) Length = 863 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Frame = -1 Query: 305 KRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKRLV 126 K N + P+P LL G G + +P +P ++ G G GRP + Sbjct: 11 KINTSRSFPAPPEASRLLGGQGPEEDGAGPKPLGAQAPAAAPRERGGGGGAGGRPRFQYQ 70 Query: 125 VEGNSQRKEK---KNLSRFSYRGTSIFVLVIVV 36 + +++ N + +++G +I +LVI+V Sbjct: 71 ARSDCDDEDELVGSNPPQRNWKGIAIALLVILV 103
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1 Query: 353 EEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGA 216 ++ G PK + R H H + HH P+P+ R A RP TG A Sbjct: 2149 QDRGRPKDRKHRPHHHHHHHHHHPPAPDRER----YAQERPDTGRA 2190
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)| Length = 706 Score = 30.0 bits (66), Expect = 2.7 Identities = 24/87 (27%), Positives = 36/87 (41%) Frame = -1 Query: 368 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 189 G+ + +G P P G+ ++ P P P P S AG P TG P Sbjct: 571 GQAPPKASGVP--PGGQ---QRQGPPQKPPGPAGPTRQASQAGPMPRTG---------PP 616 Query: 188 LSPEKKQTGAGQFGRPNKRLVVEGNSQ 108 + + + +G G GRP K + + SQ Sbjct: 617 TTQQPRPSGPGPAGRPTKPQLAQKPSQ 643
>NEURL_MOUSE (Q923S6) Neuralized-like protein 1 (m-neuralized 1) (m-neu1)| Length = 574 Score = 30.0 bits (66), Expect = 2.7 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Frame = -1 Query: 368 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPE-----VPRDLLSPAGRRPLTGGAGKVS 204 G + E G P P +P T SP + LLS G PL G AG + Sbjct: 447 GSTIMTERGGPSLPC--------SPASTPTSPSALGIRLSDPLLSTCGSGPLGGSAGGTA 498 Query: 203 YSSPLLSPEKKQT-GAGQF 150 +SP+ PE T G GQ+ Sbjct: 499 PNSPVSLPESPVTPGLGQW 517
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 353 EEAGAPKKPRGRLHRHKRNPHHTRPSPEVPR 261 +E G PK + R H H + HH P P+ R Sbjct: 2198 QERGRPKDRKHRQHHHHHHHHHHPPPPDKDR 2228
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 7/60 (11%) Frame = -1 Query: 374 HGGELMAEEAGAPKKPRGRLHRHKRNPHHTR-------PSPEVPRDLLSPAGRRPLTGGA 216 H G G KP GR R NP + P P PR SP+ P GGA Sbjct: 155 HPGMPTGPHPGPAPKPGGRPPRVGNNPFSSAQSVARPIPRPPAPRPSASPSSMSPRPGGA 214
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 29.6 bits (65), Expect = 3.5 Identities = 25/87 (28%), Positives = 36/87 (41%) Frame = -1 Query: 368 GELMAEEAGAPKKPRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPL 189 G + +GAP P G+ ++ P P P P S AG P TG P Sbjct: 571 GPAPTKASGAP--PGGQ---QRQGPPQKPPGPAGPTRQASQAGPGPRTG---------PP 616 Query: 188 LSPEKKQTGAGQFGRPNKRLVVEGNSQ 108 + + + +G G GRP K + + SQ Sbjct: 617 TTQQPRPSGPGPAGRPAKPQLAQKPSQ 643
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from transposon gypsy| [Includes: Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1035 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = -1 Query: 203 YSSPLLSPEKKQTGAGQFGRPNKRLVVE 120 Y+SP +KK T A FG PNKRLV++ Sbjct: 217 YNSPTWVVDKKGTDA--FGNPNKRLVID 242
>DBF4_XENTR (Q28FY7) Protein DBF4 homolog| Length = 663 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 209 VSYSSPLLSPEKKQ-TGAGQFGRPNKRLVVEGNSQRKEKKNL 87 + Y + SPE Q TG N+RL EGNS +K +K+L Sbjct: 76 LKYVCSVPSPEPAQNTGESSTSPGNRRLPQEGNSSKKNEKSL 117
>CJ012_HUMAN (Q8N655) Protein C10orf12| Length = 1247 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = -1 Query: 338 PKKPRGRL---HRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQ 168 PKK G+ R ++ + RPS + + L+ ++ GAG+ S S P + +KQ Sbjct: 1150 PKKSAGKSCPPSRKEKENTNKRPSQSIASETLTKPAKQK---GAGESS-SRPQKATNRKQ 1205 Query: 167 TGAGQFGRPNKRLVVEGNSQRKEK 96 + RP+ + +QRK K Sbjct: 1206 SSGKTRARPSTKTPESSAAQRKRK 1229
>ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)| Length = 723 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Frame = -1 Query: 344 GAPKKP-RGRLHRHKRNPHHTRPSPEVPRDLLSPA 243 G P KP R RH+R+P H R + +VPR L+P+ Sbjct: 631 GTPGKPKRSESPRHQRSPRHQR-NLQVPRTPLTPS 664
>MAGH1_RAT (Q5PPP4) Melanoma-associated antigen H1 (MAGE-H1 antigen)| Length = 218 Score = 29.3 bits (64), Expect = 4.5 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Frame = -1 Query: 329 PRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSP--LLSPEKKQTGAG 156 PRGR R +RN + + S A + P+ A V+ S+P LS ++ T Sbjct: 2 PRGRKSRRRRNAKAAEENRNNRKIQASEASKTPM---AASVTPSTPEEYLSGPEEDTSTP 58 Query: 155 QFGRPNKRLVVEGNSQRKEKKNLSRFSYRGTSIFVLVIVVEYIF 24 + + E +S +K ++R +++GT +L+ ++ IF Sbjct: 59 E---KASSTLAEASSTALVQKPVTRSNFQGTKKSLLMSILALIF 99
>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril| interface-located protein 5) (Elastin microfibril interfacer 5) Length = 766 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/59 (37%), Positives = 28/59 (47%) Frame = -1 Query: 281 PSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQFGRPNKRLVVEGNSQR 105 P P++P L P R P SYS SP ++ G G FG +RL EG+ QR Sbjct: 145 PEPQIPSGQLDPGPRPP--------SYSRAAPSPHGRK-GPGLFGERLERL--EGDVQR 192
>RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)| Length = 341 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 311 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGG 219 + R P +P VP+D++ PAG PL G Sbjct: 104 QQNRQPAPAKPGAVVPKDVVIPAGPTPLAPG 134
>RLA0_PYRHO (O74109) Acidic ribosomal protein P0 homolog (L10E)| Length = 342 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 311 RHKRNPHHTRPSPEVPRDLLSPAGRRPLTGG 219 + R P +P VP+D++ PAG PL G Sbjct: 104 QQNRQPAPAKPGAVVPKDVVVPAGPTPLAPG 134
>VCX1_YEAST (Q99385) Vacuolar calcium ion transporter (Vacuolar Ca(2+)/H(+)| exchanger) (High copy number undoes manganese protein 1) (Manganese resistance 1 protein) Length = 411 Score = 28.5 bits (62), Expect = 7.7 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -1 Query: 71 RGTSIFVLVIVVEYIFFPCGGH 6 RGTSI +L++ V +++F G H Sbjct: 201 RGTSIVILIVYVLFLYFQLGSH 222
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.5 bits (62), Expect = 7.7 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 20/80 (25%) Frame = -1 Query: 338 PKKPRGRLHRHK---RNPHHTRP---------------SPEVPRDLLSPAGRRPLTGGAG 213 P P G L RH P H P SPEVP DLL+ G RP G+ Sbjct: 690 PASPYGSLRRHPPPWAAPAHVPPAPQASGWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSR 749 Query: 212 K--VSYSSPLLSPEKKQTGA 159 + ++ P SP + A Sbjct: 750 RRGAAFGFPGASPRASRRRA 769
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%) Frame = -1 Query: 356 AEEAGAPKKP----RGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAG-----KVS 204 AE A P++P RG HRH R +PE P + P G +VS Sbjct: 416 AEPAAGPEEPSHFLRGAPHRHSMPELGLRSAPEPPTESPGHPAPHPDDNAFGRQSTPRVS 475 Query: 203 YSSPLLS 183 + PL+S Sbjct: 476 FRDPLVS 482
>MAGH1_MOUSE (Q9NWG9) Melanoma-associated antigen H1 (MAGE-H1 antigen)| Length = 218 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/102 (21%), Positives = 41/102 (40%) Frame = -1 Query: 329 PRGRLHRHKRNPHHTRPSPEVPRDLLSPAGRRPLTGGAGKVSYSSPLLSPEKKQTGAGQF 150 PRGR R +RN + + S A P+ + L PE+ + + Sbjct: 2 PRGRKSRRRRNAKAAEENRNNRKSQASEASETPMAASVAPSTPEEYLSGPEEDTSTLEKA 61 Query: 149 GRPNKRLVVEGNSQRKEKKNLSRFSYRGTSIFVLVIVVEYIF 24 E +S +K ++R +++GT +L+ ++ IF Sbjct: 62 SSTPS----EASSTALVQKPVTRSNFQGTKKSLLMSILALIF 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,603,224 Number of Sequences: 219361 Number of extensions: 1384480 Number of successful extensions: 4563 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4324 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4557 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
