ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet119h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506952.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0072H09.24 mRNA Length = 1710 Score = 153 bits (77), Expect = 6e-34 Identities = 151/175 (86%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 232 ggtctcctccccgcagggctgaggagatctctcgggacctcgggactggggcg---tgta 288 |||||||||||||| |||||||||||||||||||||| ||||| ||||||| || | Sbjct: 222 ggtctcctccccgcgcggctgaggagatctctcgggacatcggggttggggcggcgtgca 281 Query: 289 tgatggggatttcgcttatgccgatgaagacgcccacgaggcttctttggagcaccagct 348 |||||||| | ||||| | ||||||||||| ||||||||||||| ||||||||||||| Sbjct: 282 tgatggggttctcgctcacgccgatgaagatctccacgaggcttctgtggagcaccagct 341 Query: 349 tcttccgccataagctcgccgccatgatcgcctcctcgtcctgcttcttataaga 403 |||||||||| ||| ||||||||| ||||| ||||| |||| |||||||||||| Sbjct: 342 tcttccgccacaagatcgccgccaccatcgcgtcctcctcctccttcttataaga 396
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 153 bits (77), Expect = 6e-34 Identities = 151/175 (86%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 232 ggtctcctccccgcagggctgaggagatctctcgggacctcgggactggggcg---tgta 288 |||||||||||||| |||||||||||||||||||||| ||||| ||||||| || | Sbjct: 30400017 ggtctcctccccgcgcggctgaggagatctctcgggacatcggggttggggcggcgtgca 30400076 Query: 289 tgatggggatttcgcttatgccgatgaagacgcccacgaggcttctttggagcaccagct 348 |||||||| | ||||| | ||||||||||| ||||||||||||| ||||||||||||| Sbjct: 30400077 tgatggggttctcgctcacgccgatgaagatctccacgaggcttctgtggagcaccagct 30400136 Query: 349 tcttccgccataagctcgccgccatgatcgcctcctcgtcctgcttcttataaga 403 |||||||||| ||| ||||||||| ||||| ||||| |||| |||||||||||| Sbjct: 30400137 tcttccgccacaagatcgccgccaccatcgcgtcctcctcctccttcttataaga 30400191 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 35299104 gagaggagaggagaggagtag 35299084 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 29346881 gagaggagaggagaggagtag 29346901 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 11183501 gcgagaggagaggagaggag 11183520
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 153 bits (77), Expect = 6e-34 Identities = 151/175 (86%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 232 ggtctcctccccgcagggctgaggagatctctcgggacctcgggactggggcg---tgta 288 |||||||||||||| |||||||||||||||||||||| ||||| ||||||| || | Sbjct: 80877 ggtctcctccccgcgcggctgaggagatctctcgggacatcggggttggggcggcgtgca 80936 Query: 289 tgatggggatttcgcttatgccgatgaagacgcccacgaggcttctttggagcaccagct 348 |||||||| | ||||| | ||||||||||| ||||||||||||| ||||||||||||| Sbjct: 80937 tgatggggttctcgctcacgccgatgaagatctccacgaggcttctgtggagcaccagct 80996 Query: 349 tcttccgccataagctcgccgccatgatcgcctcctcgtcctgcttcttataaga 403 |||||||||| ||| ||||||||| ||||| ||||| |||| |||||||||||| Sbjct: 80997 tcttccgccacaagatcgccgccaccatcgcgtcctcctcctccttcttataaga 81051
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 153 bits (77), Expect = 6e-34 Identities = 151/175 (86%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 232 ggtctcctccccgcagggctgaggagatctctcgggacctcgggactggggcg---tgta 288 |||||||||||||| |||||||||||||||||||||| ||||| ||||||| || | Sbjct: 6065 ggtctcctccccgcgcggctgaggagatctctcgggacatcggggttggggcggcgtgca 6124 Query: 289 tgatggggatttcgcttatgccgatgaagacgcccacgaggcttctttggagcaccagct 348 |||||||| | ||||| | ||||||||||| ||||||||||||| ||||||||||||| Sbjct: 6125 tgatggggttctcgctcacgccgatgaagatctccacgaggcttctgtggagcaccagct 6184 Query: 349 tcttccgccataagctcgccgccatgatcgcctcctcgtcctgcttcttataaga 403 |||||||||| ||| ||||||||| ||||| ||||| |||| |||||||||||| Sbjct: 6185 tcttccgccacaagatcgccgccaccatcgcgtcctcctcctccttcttataaga 6239
>dbj|AK119592.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D05, full insert sequence Length = 1710 Score = 153 bits (77), Expect = 6e-34 Identities = 151/175 (86%), Gaps = 3/175 (1%) Strand = Plus / Plus Query: 232 ggtctcctccccgcagggctgaggagatctctcgggacctcgggactggggcg---tgta 288 |||||||||||||| |||||||||||||||||||||| ||||| ||||||| || | Sbjct: 222 ggtctcctccccgcgcggctgaggagatctctcgggacatcggggttggggcggcgtgca 281 Query: 289 tgatggggatttcgcttatgccgatgaagacgcccacgaggcttctttggagcaccagct 348 |||||||| | ||||| | ||||||||||| ||||||||||||| ||||||||||||| Sbjct: 282 tgatggggttctcgctcacgccgatgaagatctccacgaggcttctgtggagcaccagct 341 Query: 349 tcttccgccataagctcgccgccatgatcgcctcctcgtcctgcttcttataaga 403 |||||||||| ||| ||||||||| ||||| ||||| |||| |||||||||||| Sbjct: 342 tcttccgccacaagatcgccgccaccatcgcgtcctcctcctccttcttataaga 396
>gb|AY105265.1| Zea mays PCO062717 mRNA sequence Length = 2229 Score = 111 bits (56), Expect = 2e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 277 ctggggcgtgtatgatggggatttcgcttatgccgatgaagacgcccacgaggcttcttt 336 |||||||||| |||||||| ||| | | || |||||| |||| || |||||||||| | Sbjct: 447 ctggggcgtgcatgatgggattttggttgattccgatggagactccggcgaggcttctgt 506 Query: 337 ggagcaccagcttcttccgccataagctcgccgccatgatcgcctcctcgtcctgcttct 396 ||||||| |||||||||||||| ||| ||||||||||| |||||||||| |||||||||| Sbjct: 507 ggagcacgagcttcttccgccacaagatcgccgccatgctcgcctcctcctcctgcttct 566 Query: 397 tata 400 |||| Sbjct: 567 tata 570
>gb|AY104388.1| Zea mays PCO136074 mRNA sequence Length = 1227 Score = 60.0 bits (30), Expect = 6e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 312 atgaagacgcccacgaggcttctttggagcaccagcttcttccgccataagctc 365 ||||||||| ||||| || | || |||||||| ||||||||||||||||||||| Sbjct: 528 atgaagacgtccacgcggttgctctggagcactagcttcttccgccataagctc 581
>ref|XM_482406.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1837 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 305 tggagcaccagcttcttccgccataaggtcgcc 337
>ref|XM_507232.1| PREDICTED Oryza sativa (japonica cultivar-group), P0433E10.14 mRNA Length = 1855 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 304 tggagcaccagcttcttccgccataaggtcgcc 336
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 19880812 tggagcaccagcttcttccgccataaggtcgcc 19880780
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 48990 tggagcaccagcttcttccgccataaggtcgcc 48958
>gb|AF145729.1|AF145729 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA, complete cds Length = 1538 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 21 tggagcaccagcttcttccgccataaggtcgcc 53
>dbj|AK101569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050G15, full insert sequence Length = 1836 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 304 tggagcaccagcttcttccgccataaggtcgcc 336
>dbj|AK100634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110A12, full insert sequence Length = 1854 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 336 tggagcaccagcttcttccgccataagctcgcc 368 ||||||||||||||||||||||||||| ||||| Sbjct: 304 tggagcaccagcttcttccgccataaggtcgcc 336
>gb|AY104731.1| Zea mays PCO103407 mRNA sequence Length = 1011 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 179 ccggcgagaggagaggagaggagt 202 |||||||||||||||||||||||| Sbjct: 32 ccggcgagaggagaggagaggagt 9
>ref|XM_450784.1| Oryza sativa (japonica cultivar-group), mRNA Length = 204 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 336 tggagcaccagcttcttccgcca 358 ||||||||||||||||||||||| Sbjct: 56 tggagcaccagcttcttccgcca 34
>gb|AC092658.2| Homo sapiens BAC clone RP11-476C8 from 4, complete sequence Length = 130932 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtagct 206 ||||||||||||||||||||||| Sbjct: 103597 gagaggagaggagaggagtagct 103619
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 336 tggagcaccagcttcttccgcca 358 ||||||||||||||||||||||| Sbjct: 12729659 tggagcaccagcttcttccgcca 12729637
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 336 tggagcaccagcttcttccgcca 358 ||||||||||||||||||||||| Sbjct: 37436 tggagcaccagcttcttccgcca 37414
>gb|AC154095.1| Homo sapiens chromosome 12 clone fa0961, complete sequence Length = 38257 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 ctccacaaggaaaaaatatata 32 |||||||||||||||||||||| Sbjct: 7928 ctccacaaggaaaaaatatata 7949
>gb|AF443621.1| Craterostigma plantagineum homeodomain leucine zipper protein CPHB-5 (CPHB-5) mRNA, complete cds Length = 1401 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 343 ccagcttcttccgccataagct 364 |||||||||||||||||||||| Sbjct: 180 ccagcttcttccgccataagct 201
>gb|AC011611.26| Homo sapiens 12 BAC RP11-290L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179085 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 ctccacaaggaaaaaatatata 32 |||||||||||||||||||||| Sbjct: 170419 ctccacaaggaaaaaatatata 170440
>ref|XM_550342.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1834 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctccggcgagaggagaggag 196 ||||||||||||||||||||| Sbjct: 576 tctccggcgagaggagaggag 556
>gb|AC163277.4| Mus musculus BAC clone RP24-471O20 from chromosome 18, complete sequence Length = 173704 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 61623 gagaggagaggagaggagtag 61643
>ref|XM_468450.1| Oryza sativa (japonica cultivar-group), mRNA Length = 390 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 281 gagaggagaggagaggagtag 301
>ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474F11.28-1 mRNA Length = 2304 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 46 gagaggagaggagaggagtag 26
>ref|XM_468451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2049 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 79 gagaggagaggagaggagtag 59
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 9548 ggcgagaggagaggagaggag 9528
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 35531 ggcgagaggagaggagaggag 35511
>gb|AC141873.4| Mus musculus BAC clone RP24-332J21 from chromosome Y, complete sequence Length = 160015 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 149779 ggcgagaggagaggagaggag 149799
>gb|AC135809.4| Mus musculus BAC clone RP23-353F16 from chromosome 7, complete sequence Length = 195041 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 87401 gagaggagaggagaggagtag 87421
>gb|AC157024.7| Mus musculus 6 BAC RP24-549F4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 66210 gagaggagaggagaggagtag 66190
>gb|AC138084.4| Mus musculus BAC clone RP23-353F23 from chromosome 18, complete sequence Length = 186489 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 162946 gagaggagaggagaggagtag 162966
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 11432787 gagaggagaggagaggagtag 11432807
>gb|AC122468.3| Mus musculus BAC clone RP24-315E7 from chromosome 6, complete sequence Length = 162601 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 1639 gagaggagaggagaggagtag 1659
>gb|AC093126.2| Papio anubis clone RP41-231J21, complete sequence Length = 181792 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 172582 gagaggagaggagaggagtag 172562
>gb|AC112147.5| Mus musculus BAC clone RP23-175E16 from 9, complete sequence Length = 202928 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 124711 gagaggagaggagaggagtag 124691
>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence Length = 107710 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 60254 ggcgagaggagaggagaggag 60274
>gb|AC128353.6| Rattus norvegicus 13 BAC CH230-148A5 (Children's Hospital Oakland Research Institute) complete sequence Length = 207556 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 68555 gagaggagaggagaggagtag 68535
>gb|AC103419.6| Rattus norvegicus 9 BAC CH230-145A24 (Children's Hospital Oakland Research Institute) complete sequence Length = 217001 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 40855 gagaggagaggagaggagtag 40835
>gb|AC105487.6| Rattus norvegicus 1 BAC CH230-229J7 (Children's Hospital Oakland Research Institute) complete sequence Length = 221396 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 161676 gagaggagaggagaggagtag 161696
>emb|X90949.1|CPRNAHSP7 C.paradoxa mRNA for HSP70 protein Length = 1400 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 cgcctcctcgtcctgcttctt 397 ||||||||||||||||||||| Sbjct: 1052 cgcctcctcgtcctgcttctt 1032
>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07, complete sequence Length = 138383 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 91669 gagaggagaggagaggagtag 91649
>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162313 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 158367 gagaggagaggagaggagtag 158347
>emb|AL645757.13| Mouse DNA sequence from clone DN-340J1 on chromosome 3, complete sequence Length = 134040 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 53152 gagaggagaggagaggagtag 53172
>gb|AC119740.6| Homo sapiens 3 BAC RP11-657M13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104418 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 85816 gagaggagaggagaggagtag 85796
>gb|AC163691.4| Mus musculus BAC clone RP24-1D8 from chromosome y, complete sequence Length = 165543 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 52246 ggcgagaggagaggagaggag 52226
>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete sequence Length = 241886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 205408 gagaggagaggagaggagtag 205428
>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231946 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 145651 gagaggagaggagaggagtag 145671
>emb|AL606744.30| Mouse DNA sequence from clone RP23-267O21 on chromosome 3, complete sequence Length = 185867 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 150726 gagaggagaggagaggagtag 150746
>gb|AC151977.4| Mus musculus BAC clone RP24-534C19 from chromosome 9, complete sequence Length = 167864 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 149782 gagaggagaggagaggagtag 149802
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence Length = 158050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 15750 gagaggagaggagaggagtag 15730
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 16841238 gagaggagaggagaggagtag 16841218 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 33037709 gagaggagaggagaggagta 33037690
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 17280831 ggcgagaggagaggagaggag 17280811
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 26188791 gagaggagaggagaggagtag 26188811 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 19761813 gagaggagaggagaggagtag 19761833 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctccggcgagaggagaggag 196 ||||||||||||||||||||| Sbjct: 3130788 tctccggcgagaggagaggag 3130768
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 11429550 gagaggagaggagaggagtag 11429570
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 141084 gagaggagaggagaggagtag 141104
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 49438 gagaggagaggagaggagtag 49418
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctccggcgagaggagaggag 196 ||||||||||||||||||||| Sbjct: 84973 tctccggcgagaggagaggag 84953
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 28858 gagaggagaggagaggagtag 28878
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 53331 gagaggagaggagaggagtag 53351
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 111154 gagaggagaggagaggagtag 111134
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16 Length = 164373 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 144226 gagaggagaggagaggagtag 144246
>dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B09, full insert sequence Length = 1834 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 tctccggcgagaggagaggag 196 ||||||||||||||||||||| Sbjct: 576 tctccggcgagaggagaggag 556
>dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H07, full insert sequence Length = 2304 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 46 gagaggagaggagaggagtag 26
>dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H02, full insert sequence Length = 2049 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 79 gagaggagaggagaggagtag 59
>gb|AC160967.4| Mus musculus BAC clone RP24-385N6 from chromosome y, complete sequence Length = 150231 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 36945 ggcgagaggagaggagaggag 36925
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 17374476 ggcgagaggagaggagaggag 17374456
>gb|AC154179.1| Mus musculus BAC clone RP23-468C22 from 16, complete sequence Length = 183622 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 136331 gagaggagaggagaggagtag 136351
>gb|AC140933.1| Gallus gallus BAC clone TAM31-60P10 from chromosome ul, complete sequence Length = 119242 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 ctccggcgagaggagaggagaggag 201 ||||| ||||||||||||||||||| Sbjct: 88010 ctccgccgagaggagaggagaggag 87986
>emb|CT025642.13| Mouse DNA sequence from clone RP23-471B6 on chromosome 13, complete sequence Length = 175367 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 127772 ggcgagaggagaggagaggag 127792
>emb|BX000432.7| Mouse DNA sequence from clone RP23-156G21 on chromosome 11, complete sequence Length = 68304 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 20557 ggcgagaggagaggagaggag 20577
>gb|U12235.1|MMU12235 Mus musculus 129/SvJ urokinase-type plasminogen activator receptor (uPAR) gene, complete cds Length = 16019 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 3512 ggcgagaggagaggagaggag 3492
>gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, complete sequence Length = 250028 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 ggcgagaggagaggagaggag 201 ||||||||||||||||||||| Sbjct: 206431 ggcgagaggagaggagaggag 206451
>emb|AL691501.15| Mouse DNA sequence from clone RP23-220M11 on chromosome 4, complete sequence Length = 176069 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagtag 204 ||||||||||||||||||||| Sbjct: 38829 gagaggagaggagaggagtag 38809
>gb|AC139131.19| Mus musculus chromosome 7, clone RP23-301N20, complete sequence Length = 230772 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 cacaaggaaaaaatatatactcta 37 ||||| |||||||||||||||||| Sbjct: 68089 cacaaagaaaaaatatatactcta 68066
>gb|AC171406.3| Mus musculus BAC RP24-475O6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 192548 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 agctaaccttgcctgctcct 222 |||||||||||||||||||| Sbjct: 154228 agctaaccttgcctgctcct 154247
>gb|AC137855.14| Mus musculus chromosome 16, clone RP24-444E8, complete sequence Length = 196783 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ttggagcaccagcttcttcc 354 |||||||||||||||||||| Sbjct: 105041 ttggagcaccagcttcttcc 105022
>gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 212347 gagaggagaggagaggagta 212366
>gb|BT017465.1| Zea mays clone EL01N0407G03.c mRNA sequence Length = 964 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 56 gcgagaggagaggagaggag 37
>gb|U91929.1|MMU91929 Mus musculus L1 neural cell adhesion protein gene, 5' sequence and exon 1 Length = 12496 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 5271 gcgagaggagaggagaggag 5252
>gb|AC166989.4| Mus musculus BAC clone RP24-345J5 from chromosome 16, complete sequence Length = 232228 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 208082 gagaggagaggagaggagta 208101
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 138837 cggcgagaggagaggagagg 138818
>gb|AC146541.2| Gasterosteus aculeatus clone CH213-33P7, complete sequence Length = 209797 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 58650 cggcgagaggagaggagagg 58631
>ref|XM_882730.1| PREDICTED: Bos taurus similar to TBC1 domain family, member 16, transcript variant 4 (LOC512099), mRNA Length = 2772 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cgcctcctcgtcctgcttct 396 |||||||||||||||||||| Sbjct: 285 cgcctcctcgtcctgcttct 266
>ref|XM_882723.1| PREDICTED: Bos taurus similar to TBC1 domain family, member 16, transcript variant 3 (LOC512099), mRNA Length = 2781 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cgcctcctcgtcctgcttct 396 |||||||||||||||||||| Sbjct: 285 cgcctcctcgtcctgcttct 266
>ref|XM_589545.2| PREDICTED: Bos taurus similar to TBC1 domain family, member 16, transcript variant 1 (LOC512099), mRNA Length = 2820 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cgcctcctcgtcctgcttct 396 |||||||||||||||||||| Sbjct: 285 cgcctcctcgtcctgcttct 266
>ref|XM_869515.1| PREDICTED: Bos taurus similar to TBC1 domain family, member 16, transcript variant 2 (LOC512099), mRNA Length = 2865 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cgcctcctcgtcctgcttct 396 |||||||||||||||||||| Sbjct: 285 cgcctcctcgtcctgcttct 266
>gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's Hospital Oakland Research Institute) complete sequence Length = 176067 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agaggagaggagaggagtag 204 |||||||||||||||||||| Sbjct: 175072 agaggagaggagaggagtag 175091
>gb|AC157897.2| Mus musculus chromosome 15, clone RP23-442E13, complete sequence Length = 186421 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 140510 gagaggagaggagaggagta 140491
>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence Length = 183075 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgagaggagaggagaggagt 202 |||||||||||||||||||| Sbjct: 13783 cgagaggagaggagaggagt 13764
>gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosome 9, complete sequence Length = 179156 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccacaaggaaaaaatatata 32 |||||||||||||||||||| Sbjct: 132314 ccacaaggaaaaaatatata 132295
>gb|AC125201.4| Mus musculus BAC clone RP23-224O3 from 14, complete sequence Length = 189542 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 7422 gagaggagaggagaggagta 7403
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 cttctccggcgagaggagaggagaggag 201 |||| |||| |||||||||||||||||| Sbjct: 79781 cttcgccggggagaggagaggagaggag 79754
>emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chromosome 13 Contains parts of four novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccacaaggaaaaaatatata 32 |||||||||||||||||||| Sbjct: 134197 ccacaaggaaaaaatatata 134178
>emb|AL162379.14| Human DNA sequence from clone RP11-426K7 on chromosome 13 Contains part of a novel gene, complete sequence Length = 109757 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccacaaggaaaaaatatata 32 |||||||||||||||||||| Sbjct: 42885 ccacaaggaaaaaatatata 42866
>emb|AL121910.26|HSDJ827L5 Human DNA sequence from clone RP5-827L5 on chromosome 20 Contains two putative novel genes, a CpG island, ESTs, STSs and GSSs, complete sequence Length = 141895 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaggaaaaaatatatact 34 |||||||||||||||||||| Sbjct: 140482 acaaggaaaaaatatatact 140501
>gb|AC166327.1| Mus musculus BAC clone RP23-175K2 from chromosome 16, complete sequence Length = 188081 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 87112 gagaggagaggagaggagta 87131
>emb|AL591492.11| Zebrafish DNA sequence from clone BUSM1-261O22 in linkage group 20 Contains a novel gene similar to FKBP3 (FK506 binding protein 3), a novel gene for a protein similar to pre-mRNA processing proteins, a novel retrotransposon and two CpG islands, complete sequence Length = 92083 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 actataaccaatacaaaaat 59 |||||||||||||||||||| Sbjct: 77614 actataaccaatacaaaaat 77633
>emb|AL929547.13| Mouse DNA sequence from clone RP23-180L23 on chromosome 11 Contains part of a novel gene and a CpG island, complete sequence Length = 218414 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aggaaaaaatatatactcta 37 |||||||||||||||||||| Sbjct: 181102 aggaaaaaatatatactcta 181121
>emb|AL669827.5| Mouse DNA sequence from clone RP23-350D17 on chromosome 11 Contains a PDZ domain containing guanine (Pdzgef1) pseudogene, a tubulin alpha 4 (Tuba4) pseudogene , an olfactory receptor pseudogene, a novel pseudogene and the 3' end of a novel gene, complete sequence Length = 108424 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 64741 gagaggagaggagaggagta 64722
>gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0009H09, complete sequence Length = 148740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 32468 cggcgagaggagaggagagg 32449
>gb|AE014176.1| Mus musculus piebald deletion region section 4 of 11 of the complete sequence Length = 395229 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 92585 gagaggagaggagaggagta 92566
>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence Length = 149173 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 acaaggaaaaaatatatact 34 |||||||||||||||||||| Sbjct: 133277 acaaggaaaaaatatatact 133296
>gb|AC109461.3| Homo sapiens chromosome 5 clone RP11-269G2, complete sequence Length = 89234 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgaggagatctctcgggacc 270 |||||||||||||||||||| Sbjct: 33351 tgaggagatctctcgggacc 33370
>gb|AF026205.2| Caenorhabditis elegans cosmid T23E7, complete sequence Length = 45635 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aaccaatacaaaaatactag 64 |||||||||||||||||||| Sbjct: 7100 aaccaatacaaaaatactag 7081
>dbj|AK143634.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430004G05 product:unclassifiable, full insert sequence Length = 1760 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agctaaccttgcctgctcct 222 |||||||||||||||||||| Sbjct: 1657 agctaaccttgcctgctcct 1638
>gb|AC016553.6| Homo sapiens chromosome 5 clone CTC-305H11, complete sequence Length = 125837 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgaggagatctctcgggacc 270 |||||||||||||||||||| Sbjct: 125627 tgaggagatctctcgggacc 125646
>gb|AC055878.5| Homo sapiens chromosome 11, clone RP11-34N19, complete sequence Length = 183763 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 aaaaatatatactctactac 41 |||||||||||||||||||| Sbjct: 124012 aaaaatatatactctactac 123993
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 25990852 cggcgagaggagaggagagg 25990871 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 549808 gcgagaggagaggagaggag 549789
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 cttctccggcgagaggagaggagaggag 201 |||| |||| |||||||||||||||||| Sbjct: 18576370 cttcgccggggagaggagaggagaggag 18576343
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 23207062 cggcgagaggagaggagagg 23207043
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 8987940 gcgagaggagaggagaggag 8987921
>gb|AC156283.6| Mus musculus 6 BAC RP24-327I4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172188 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 6745 gagaggagaggagaggagta 6764
>gb|AC134550.5| Mus musculus BAC clone RP24-272L6 from chromosome 3, complete sequence Length = 164204 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 66810 gagaggagaggagaggagta 66829
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 95695 gcgagaggagaggagaggag 95676
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 16947 gcgagaggagaggagaggag 16928
>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_D08 Length = 119557 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 102680 gcgagaggagaggagaggag 102699
>dbj|AK103175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121H10, full insert sequence Length = 2376 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 cttctccggcgagaggagaggagaggag 201 |||| |||| |||||||||||||||||| Sbjct: 78 cttcgccggggagaggagaggagaggag 51
>emb|AL844885.4| Mouse DNA sequence from clone RP23-226E14 on chromosome 2, complete sequence Length = 129810 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 16729 gagaggagaggagaggagta 16710
>dbj|AK065163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C07, full insert sequence Length = 1312 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 37 cggcgagaggagaggagagg 18
>dbj|AK062518.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C10, full insert sequence Length = 801 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 30 gcgagaggagaggagaggag 11
>gb|AY107449.1| Zea mays PCO136884 mRNA sequence Length = 793 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tcgccgccatgatcgcctcc 383 |||||||||||||||||||| Sbjct: 580 tcgccgccatgatcgcctcc 561
>gb|AY105042.1| Zea mays PCO098401 mRNA sequence Length = 1154 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 116 gcgagaggagaggagaggag 97
>emb|AL732337.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0821G03, complete sequence Length = 75285 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 67590 gagaggagaggagaggagta 67571
>emb|AL355836.3|CNS05TCQ Human chromosome 14 DNA sequence BAC R-8L8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166894 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 92201 gagaggagaggagaggagta 92182
>gb|AC153484.4| Mus musculus 10 BAC RP23-388B8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 166648 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 agctaaccttgcctgctcct 222 |||||||||||||||||||| Sbjct: 91809 agctaaccttgcctgctcct 91828
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 cttctccggcgagaggagaggagaggag 201 |||| |||| |||||||||||||||||| Sbjct: 18586823 cttcgccggggagaggagaggagaggag 18586796
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 25919028 cggcgagaggagaggagagg 25919047 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 549808 gcgagaggagaggagaggag 549789
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cggcgagaggagaggagagg 199 |||||||||||||||||||| Sbjct: 120819 cggcgagaggagaggagagg 120800
>emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence Length = 140626 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 47290 gagaggagaggagaggagta 47271
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcgagaggagaggagaggag 201 |||||||||||||||||||| Sbjct: 99035 gcgagaggagaggagaggag 99054
>gb|CP000188.1| Drosophila melanogaster genomic scaffold 211000022279977 Length = 252652 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgagaggagaggagaggagt 202 |||||||||||||||||||| Sbjct: 252563 cgagaggagaggagaggagt 252544
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 tttggagcaccagcttcttc 353 |||||||||||||||||||| Sbjct: 1691397 tttggagcaccagcttcttc 1691378
>gb|AC140266.3| Mus musculus BAC clone RP24-300H3 from 7, complete sequence Length = 168787 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gagaggagaggagaggagta 203 |||||||||||||||||||| Sbjct: 49333 gagaggagaggagaggagta 49352
>gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complete sequence Length = 195883 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccacaaggaaaaaatatata 32 |||||||||||||||||||| Sbjct: 166857 ccacaaggaaaaaatatata 166876
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tgtcctccacaaggaaaaaa 26 |||||||||||||||||||| Sbjct: 2943952 tgtcctccacaaggaaaaaa 2943933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,743,579 Number of Sequences: 3902068 Number of extensions: 4743579 Number of successful extensions: 196031 Number of sequences better than 10.0: 137 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 193297 Number of HSP's gapped (non-prelim): 2725 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
