>ICAL_PIG (P12675) Calpastatin (Calpain inhibitor)|
          Length = 713

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 411 SLSLHQPTREEASSPRAKCQEPTLQDGRTDEQYSSNAS 298
           S S  QPT E+++ P+AK Q+PT  DG+      S AS
Sbjct: 85  SRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAAS 122

>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 406  LPAPANKRRSIKSSSQMPRTNPTRRTDG 323
            LP PA   RS++  S  PR  PTRR  G
Sbjct: 1249 LPPPAPTSRSLEDLSSCPRAAPTRRLTG 1276

>REV_CAEV (P31628) Trans-regulatory splicing-like protein (REV-like protein)|
          Length = 133

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -3

Query: 384 EEASSPRAKC--QEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCWAMVAVGREEWSRGG 211
           EE    R  C  ++  +QD +     + ++     ++ RR   G W         W RG 
Sbjct: 23  EEEKGKRKGCIERQQDIQDLKYPNLPAGHSHHGNKSRRRRRQSGFW--------RWLRGI 74

Query: 210 EEQREKLGEQKERGLGGC 157
             QR+K     E+GLG C
Sbjct: 75  RRQRDKPKGDSEKGLGSC 92

>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41|
          Length = 615

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
 Frame = -3

Query: 396 QPTREEASSPRAKCQEPTLQDGRTDEQYSSNASLSLLNKGRRSHLG-CWAMVAVGREEWS 220
           Q  R   ++    C     Q   T E  S N  LSL+     + LG   A++  G     
Sbjct: 223 QAERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALIKPGSPVML 282

Query: 219 RGGEE----QREKLGEQKERGLGGCPPSST 142
           +  ++    +RE +GE +   +G  PPS++
Sbjct: 283 QNTQDYMDVKRESIGEDEMTVIGLVPPSAS 312

>M3KL4_HUMAN (Q5TCX8) Mitogen-activated protein kinase kinase kinase (EC|
           2.7.11.25) (Mixed lineage kinase 4)
          Length = 1036

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 391 NKRRSIKSSSQMPRTNPTRRTDGRAIQL 308
           +KRRS+ SSS  P ++PT     RAIQL
Sbjct: 532 DKRRSLNSSSSSPPSSPTMMPRLRAIQL 559

>VP19_AMCV (P15960) RNA silencing suppressor (19 kDa symptom severity|
           modulator) (Core protein p19)
          Length = 172

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 219 RGGEEQREKLGEQKERGLGGCPPSSTGIQQPDDA*DW*EVRLLQEWRPKNEITES 55
           +G + + +  GE+ + G GG   +++G + PD++  W       EWR  N+ T+S
Sbjct: 6   QGNDAREQANGERWDGGSGG---TTSGFKLPDESPSW------TEWRIHNDETDS 51

>POL_SIVVT (P05895) Pol polyprotein [Contains: Protease (Retropepsin) (EC|
           3.4.23.-); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
          Length = 1061

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 420 CTTSLSLHQPTREEASSPRAKCQEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCW 253
           C +S   H P R    +P A C+E    +G  +E   S  + S L++G    L  W
Sbjct: 63  CASSTERHHPIRPSKEAPAAICRERETTEGAKEE---STGNESGLDRGIFFELPLW 115

>YCF2_PELHO (Q32836) Protein ycf2|
          Length = 2109

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
 Frame = -3

Query: 381 EASSPRAKCQEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCWAMV--------AVGREE 226
           E+  P A+    TL   RT  +Y+ N   S L K R+        +        A  R++
Sbjct: 444 ESGIPGAQIGNETLSH-RTLMKYTVNRHFSSLKKSRKKSFDPLLFIERSMNRDPAAYRDK 502

Query: 225 WSRGGEEQREKL----GEQKER 172
           WS+GG+  +E L     EQK R
Sbjct: 503 WSKGGKTFQEHLEHFVSEQKNR 524

>CAPS_DROME (Q9NHE5) Calcium-dependent secretion activator (dCAPS)|
          Length = 1436

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 434 SRSLAVP-PLSPCTSQQEKKHQVLEPNAKNQPYKTDGRTSNTARMQVSLCL 285
           SR+ ++P PLSP  S   +KH+  EP+ K++  + + +      + +S C+
Sbjct: 128 SRANSLPRPLSPSPSLTSEKHETAEPHGKHEREEEERKRRIQLYVFISRCI 178

>MCA1_CRIGR (O54873) Multisynthetase complex auxiliary component p43 [Contains:|
           Endothelial monocyte-activating polypeptide 2 (EMAP-II)
           (Small inducible cytokine subfamily E member 1)]
          Length = 359

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -3

Query: 354 QEPTLQDGRTDEQYSSNASLSLLNKGRRSHLGCWAMVAVGREEWSRGGEEQR------EK 193
           Q P      T  Q SS  S S++     S + C        +E S+GG E++      +K
Sbjct: 123 QIPVPVQSDTPVQASSAVSTSVIQSTSVSTISC------SIKEHSKGGGEEKKVKEKTDK 176

Query: 192 LGEQKERGLGGCPPSS 145
            GE+KE+ L    PS+
Sbjct: 177 KGEKKEKKLQSAAPSA 192

>MBRL_HUMAN (Q4ZIN3) Membralin|
          Length = 620

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = -1

Query: 443 EDVSRSLAVPPLSPCTSQQEKKHQVLEPNAKNQPYKTDGRTSNTARMQVSLCLIKGGDLT 264
           +D++ +   P  +P ++ Q      + P A   P       S+      S+    GGDL 
Sbjct: 480 DDMNNNSGAPATAPDSAGQPPALGPVSPGASGSPGPVAAAPSSLVAAAASVAAAAGGDLG 539

Query: 263 WAA 255
           W A
Sbjct: 540 WMA 542

>RE114_YEAST (P32841) Meiotic recombination protein REC114|
          Length = 428

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 428 SLAVPPLSPCTSQQEKKHQVLEPNAKNQPYKTDGRTSNTARMQVSLC 288
           SL V PL    SQ         PNA+N+  K D  +  T+R +++LC
Sbjct: 247 SLIVQPLE--VSQSPPNTTNCLPNAENKKKKVDTTSDFTSRKEIALC 291

>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 403  PAPANKRRSIKSSSQMPRTNPTRRTDG 323
            P PA   RS++  S  PR  PTRR  G
Sbjct: 1250 PPPAPTSRSLEDLSSCPRAAPTRRLTG 1276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,494,528
Number of Sequences: 219361
Number of extensions: 1094905
Number of successful extensions: 3262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3256
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)