ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet119g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_785669.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.097
2emb|AL669990.1|NCB8J24 Neurospora crassa DNA linkage group II BA... 42 1.5
3gb|AC069216.13| Homo sapiens 3 BAC RP11-621D6 (Roswell Park Canc... 42 1.5
4gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.5
5emb|BX000444.11| Zebrafish DNA sequence from clone RP71-31C2 in ... 42 1.5
6gb|AY394939.1| Danio rerio clone RK046A1C09 WD repeat domain 1 m... 40 6.0
7gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, co... 40 6.0
8gb|BC045455.1| Danio rerio WD repeat domain 1, mRNA (cDNA clone ... 40 6.0
9gb|AE012984.1| Thermoanaerobacter tengcongensis MB4, section 11 ... 40 6.0
10gb|AC133550.2| Homo sapiens chromosome 16 clone RP11-22P6, compl... 40 6.0
11gb|AC123810.4| Mus musculus BAC clone RP24-178B17 from chromosom... 40 6.0
12gb|AC105339.9| Homo sapiens chromosome 15, clone RP11-752G15, co... 40 6.0
13gb|AC157986.4| Mus musculus chromosome 19, clone RP23-160F18, co... 40 6.0
14gb|AC114543.10| Mus musculus, clone RP24-107C11, complete sequence 40 6.0
15gb|AC145203.1| Homo sapiens chromosome 19 clone XXfos-800752H11,... 40 6.0
16emb|Y18876.1|DSU18876 Drosophila subobscura RpII215 gene 40 6.0
17emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chr... 40 6.0
18gb|BC066764.1| Danio rerio WD repeat domain 1, mRNA (cDNA clone ... 40 6.0
19emb|BX663533.7| Zebrafish DNA sequence from clone DKEY-85A11 in ... 40 6.0
20gb|AC092756.2| Homo sapiens chromosome 15 clone RP11-429D19 map ... 40 6.0
21gb|AC022272.6| Homo sapiens BAC clone RP11-563E2 from 4, complet... 40 6.0
22gb|AC044907.16| Homo sapiens chromosome 15, clone RP11-127F21, c... 40 6.0
23gb|AC092315.2| Homo sapiens chromosome 19 clone LLNLR-306A10, co... 40 6.0
24gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15... 40 6.0
25gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, r... 40 6.0
26gb|AC135783.2| Homo sapiens chromosome 16 clone CTD-2555L18, com... 40 6.0
27dbj|AB092409.1| Trichomonas vaginalis gene for cytosolic-type hs... 40 6.0
28gb|AY190935.1| Drosophila erecta clone DERF01_47_N08 (D1472) gen... 40 6.0
29gb|AF272653.1|AF272653 Drosophila subobscura strain pp10 RNA pol... 40 6.0
30gb|AF272652.1|AF272652 Drosophila subobscura strain pp3 RNA poly... 40 6.0
31gb|AF272645.1|AF272645 Drosophila subobscura strain pp6 RNA poly... 40 6.0
32gb|AF272644.1|AF272644 Drosophila subobscura strain pp31 RNA pol... 40 6.0
33gb|AF272643.1|AF272643 Drosophila subobscura strain pp1 RNA poly... 40 6.0
34gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Can... 40 6.0
35gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cance... 40 6.0
36gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, co... 40 6.0
37gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26... 40 6.0
38gb|AC106833.10| Mus musculus chromosome 19, clone RP24-503K22, c... 40 6.0
39gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, comple... 40 6.0
40gb|AC145973.3| Gallus gallus BAC clone CH261-2E2 from chromosome... 40 6.0
41ref|NM_201039.1| Danio rerio WD repeat domain 1 (wdr1), mRNA 40 6.0 
>ref|XM_785669.1| PREDICTED: Strongylocentrotus purpuratus similar to Neuronal
           acetylcholine receptor protein, alpha-6 subunit
           precursor (LOC585863), mRNA
          Length = 867

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 51  aacacgattctgtgatctcattt 73
           |||||||||||||||||||||||
Sbjct: 601 aacacgattctgtgatctcattt 579
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>emb|AL669990.1|NCB8J24 Neurospora crassa DNA linkage group II BAC clone B8J24
          Length = 77612

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   actcctccctccccaccgcca 245
             |||||||||||||||||||||
Sbjct: 44228 actcctccctccccaccgcca 44208
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>gb|AC069216.13| Homo sapiens 3 BAC RP11-621D6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 150145

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 278    cctttattaagcagagagaga 298
              |||||||||||||||||||||
Sbjct: 116114 cctttattaagcagagagaga 116134
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 142     tgtagaagaaggtgggcagccccca 166
               ||||| |||||||||||||||||||
Sbjct: 1624264 tgtagtagaaggtgggcagccccca 1624240
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>emb|BX000444.11| Zebrafish DNA sequence from clone RP71-31C2 in linkage group 9,
             complete sequence
          Length = 128377

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   tcgtccgtccgtccgtcttgt 340
             |||||||||||||||||||||
Sbjct: 19224 tcgtccgtccgtccgtcttgt 19244
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>gb|AY394939.1| Danio rerio clone RK046A1C09 WD repeat domain 1 mRNA, complete cds
          Length = 2376

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  tgctcgtccgtccgtccgtcttgt 340
            |||||||||||||||||| |||||
Sbjct: 1130 tgctcgtccgtccgtccgccttgt 1107
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>gb|AC161342.10| Mus musculus chromosome 1, clone RP23-313K17, complete sequence
          Length = 181572

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     tcattttttgggcgccattc 87
              ||||||||||||||||||||
Sbjct: 131908 tcattttttgggcgccattc 131889
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>gb|BC045455.1| Danio rerio WD repeat domain 1, mRNA (cDNA clone MGC:55793
            IMAGE:3817406), complete cds
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  tgctcgtccgtccgtccgtcttgt 340
            |||||||||||||||||| |||||
Sbjct: 1131 tgctcgtccgtccgtccgccttgt 1108
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>gb|AE012984.1| Thermoanaerobacter tengcongensis MB4, section 11 of 244 of the
            complete genome
          Length = 10180

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 367  aggacttgatgcttcttctcttgt 390
            ||||||||||||||||||| ||||
Sbjct: 2552 aggacttgatgcttcttcttttgt 2575
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>gb|AC133550.2| Homo sapiens chromosome 16 clone RP11-22P6, complete sequence
          Length = 58207

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   ttggttcttggcatttggct 364
             ||||||||||||||||||||
Sbjct: 54081 ttggttcttggcatttggct 54062
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>gb|AC123810.4| Mus musculus BAC clone RP24-178B17 from chromosome 8, complete sequence
          Length = 161521

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 342    gggttggttcttggcatttggctc 365
              |||||||||| |||||||||||||
Sbjct: 159543 gggttggttcctggcatttggctc 159520
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>gb|AC105339.9| Homo sapiens chromosome 15, clone RP11-752G15, complete sequence
          Length = 175786

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 370   acttgatgcttcttctcttgttgg 393
             |||||||| |||||||||||||||
Sbjct: 21816 acttgatggttcttctcttgttgg 21793
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>gb|AC157986.4| Mus musculus chromosome 19, clone RP23-160F18, complete sequence
          Length = 207504

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    accactcctccctccccacc 241
              ||||||||||||||||||||
Sbjct: 188452 accactcctccctccccacc 188433
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>gb|AC114543.10| Mus musculus, clone RP24-107C11, complete sequence
          Length = 191639

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    cgtccgtccgtccgtcttgt 340
              ||||||||||||||||||||
Sbjct: 132460 cgtccgtccgtccgtcttgt 132441
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>gb|AC145203.1| Homo sapiens chromosome 19 clone XXfos-800752H11, complete sequence
          Length = 41422

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ctccctccccaccgccacca 248
             ||||||||||||||||||||
Sbjct: 24694 ctccctccccaccgccacca 24713
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>emb|Y18876.1|DSU18876 Drosophila subobscura RpII215 gene
          Length = 7816

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 cgtccgtccgtccgtcttgt 340
           ||||||||||||||||||||
Sbjct: 796 cgtccgtccgtccgtcttgt 815
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>emb|AL592551.10| Mouse DNA sequence from clone RP23-12I13 on chromosome 11, complete
             sequence
          Length = 215657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gcccagcagcccaagtgaga 270
             ||||||||||||||||||||
Sbjct: 70821 gcccagcagcccaagtgaga 70840
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>gb|BC066764.1| Danio rerio WD repeat domain 1, mRNA (cDNA clone MGC:77547
            IMAGE:6959928), complete cds
          Length = 2366

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  tgctcgtccgtccgtccgtcttgt 340
            |||||||||||||||||| |||||
Sbjct: 1078 tgctcgtccgtccgtccgccttgt 1055
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>emb|BX663533.7| Zebrafish DNA sequence from clone DKEY-85A11 in linkage group 23,
             complete sequence
          Length = 33191

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   gttgaatccctgtagaagaa 151
             ||||||||||||||||||||
Sbjct: 11100 gttgaatccctgtagaagaa 11081
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>gb|AC092756.2| Homo sapiens chromosome 15 clone RP11-429D19 map 15q21.3, complete
             sequence
          Length = 189999

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tgcagggagagagaggtggt 417
             ||||||||||||||||||||
Sbjct: 37376 tgcagggagagagaggtggt 37395
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>gb|AC022272.6| Homo sapiens BAC clone RP11-563E2 from 4, complete sequence
          Length = 186535

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   agggagagagaggtggtaca 420
             ||||||||||||||||||||
Sbjct: 61623 agggagagagaggtggtaca 61642
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>gb|AC044907.16| Homo sapiens chromosome 15, clone RP11-127F21, complete sequence
          Length = 170793

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 370   acttgatgcttcttctcttgttgg 393
             |||||||| |||||||||||||||
Sbjct: 60049 acttgatggttcttctcttgttgg 60072
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>gb|AC092315.2| Homo sapiens chromosome 19 clone LLNLR-306A10, complete sequence
          Length = 44735

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ctccctccccaccgccacca 248
             ||||||||||||||||||||
Sbjct: 32791 ctccctccccaccgccacca 32810
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>gb|AC092757.2| Homo sapiens chromosome 15 clone RP11-59H7 map 15q21.3, complete sequence
          Length = 171114

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    tgcagggagagagaggtggt 417
              ||||||||||||||||||||
Sbjct: 151893 tgcagggagagagaggtggt 151912
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>gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR14L19, complete sequence
          Length = 192763

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   tgctcgtccgtccgtccgtc 336
             ||||||||||||||||||||
Sbjct: 71544 tgctcgtccgtccgtccgtc 71563
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>gb|AC135783.2| Homo sapiens chromosome 16 clone CTD-2555L18, complete sequence
          Length = 224150

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   ttggttcttggcatttggct 364
             ||||||||||||||||||||
Sbjct: 47509 ttggttcttggcatttggct 47490
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>dbj|AB092409.1| Trichomonas vaginalis gene for cytosolic-type hsp90, partial cds
          Length = 1059

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 58  ttctgtgatctcattttttgggcg 81
           |||||||||||||||| |||||||
Sbjct: 831 ttctgtgatctcatttgttgggcg 808
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>gb|AY190935.1| Drosophila erecta clone DERF01_47_N08 (D1472) genomic sequence
          Length = 43589

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   tgctcgtccgtccgtccgtc 336
             ||||||||||||||||||||
Sbjct: 19034 tgctcgtccgtccgtccgtc 19015
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>gb|AF272653.1|AF272653 Drosophila subobscura strain pp10 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7936

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  cgtccgtccgtccgtcttgt 340
            ||||||||||||||||||||
Sbjct: 1409 cgtccgtccgtccgtcttgt 1428
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>gb|AF272652.1|AF272652 Drosophila subobscura strain pp3 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7957

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  cgtccgtccgtccgtcttgt 340
            ||||||||||||||||||||
Sbjct: 1403 cgtccgtccgtccgtcttgt 1422
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>gb|AF272645.1|AF272645 Drosophila subobscura strain pp6 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7963

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  cgtccgtccgtccgtcttgt 340
            ||||||||||||||||||||
Sbjct: 1432 cgtccgtccgtccgtcttgt 1451
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>gb|AF272644.1|AF272644 Drosophila subobscura strain pp31 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7941

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  cgtccgtccgtccgtcttgt 340
            ||||||||||||||||||||
Sbjct: 1430 cgtccgtccgtccgtcttgt 1449
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>gb|AF272643.1|AF272643 Drosophila subobscura strain pp1 RNA polymerase II largest subunit
            (RpII215) gene, complete cds
          Length = 7919

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  cgtccgtccgtccgtcttgt 340
            ||||||||||||||||||||
Sbjct: 1404 cgtccgtccgtccgtcttgt 1423
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>gb|AC153884.1| Mus musculus  6 BAC RP23-476E22 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 195597

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   cgccaccattgcccagcagc 260
             ||||||||||||||||||||
Sbjct: 32519 cgccaccattgcccagcagc 32538
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>gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224075

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    cgccaccattgcccagcagc 260
              ||||||||||||||||||||
Sbjct: 143798 cgccaccattgcccagcagc 143817
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>gb|AC147513.16| Mus musculus chromosome 1, clone RP23-105K16, complete sequence
          Length = 209834

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     tcattttttgggcgccattc 87
              ||||||||||||||||||||
Sbjct: 171720 tcattttttgggcgccattc 171701
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>gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26 of 73 of the complete
              sequence
          Length = 268836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    tgctcgtccgtccgtccgtc 336
              ||||||||||||||||||||
Sbjct: 226888 tgctcgtccgtccgtccgtc 226907
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>gb|AC106833.10| Mus musculus chromosome 19, clone RP24-503K22, complete sequence
          Length = 180887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   accactcctccctccccacc 241
             ||||||||||||||||||||
Sbjct: 39450 accactcctccctccccacc 39431
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>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence
          Length = 184939

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 342    gggttggttcttggcatttggctc 365
              |||||||||| |||||||||||||
Sbjct: 122918 gggttggttcctggcatttggctc 122895
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>gb|AC145973.3| Gallus gallus BAC clone CH261-2E2 from chromosome unknown, complete
            sequence
          Length = 190804

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  cttgtagggttggttcttgg 355
            ||||||||||||||||||||
Sbjct: 9621 cttgtagggttggttcttgg 9640
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>ref|NM_201039.1| Danio rerio WD repeat domain 1 (wdr1), mRNA
          Length = 2400

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  tgctcgtccgtccgtccgtcttgt 340
            |||||||||||||||||| |||||
Sbjct: 1131 tgctcgtccgtccgtccgccttgt 1108


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,510,773
Number of Sequences: 3902068
Number of extensions: 4510773
Number of successful extensions: 103292
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103185
Number of HSP's gapped (non-prelim): 107
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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