>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)|
          Length = 320

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = -3

Query: 317 DCSQPEQAQGGPAAVLSPWARRCLPDGR*SSLQEEHCPVRRSWRMGGSPAAISCASSLRP 138
           D S   Q  GGPA V+ PWA                 P+R      G+P  +S A  L P
Sbjct: 36  DASSQTQGAGGPAGVIGPWA---------------PAPLRLGEAAPGTPTPVSVAHLLSP 80

Query: 137 V 135
           V
Sbjct: 81  V 81

>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 568

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -3

Query: 335 RSNHQEDCSQPEQAQGGPAAVLSPW--ARRCLPDGR*SSLQ-----EEHCPVRRSWRMGG 177
           R N Q  C+  +  QGG  + L     ARR L   R SSL+     EE+ P+RR   + G
Sbjct: 215 RQNSQNYCALEQSGQGGSTSALEQLQRARRRLISQR-SSLETLEDIEENAPLRRCRTLSG 273

Query: 176 SP 171
           SP
Sbjct: 274 SP 275

>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the|
           cerebellum 5)
          Length = 639

 Score = 25.8 bits (55), Expect(2) = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 371 PPPPKPSFLAKFCPCLAGGGATS 439
           PPPP P  L+ +    +GGG +S
Sbjct: 143 PPPPPPPALSGYTTTNSGGGGSS 165



 Score = 23.9 bits (50), Expect(2) = 1.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 323 GDYFVGRPSNHEQNTTPPPPKP 388
           G Y  G  S+  Q + PPPP P
Sbjct: 110 GSYPCGGGSSGAQPSAPPPPAP 131

>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 224 LQEEHCPVRRSWRMGGSPAAISCASSLRPVP 132
           + E  CP  ++W  G   +A++CA+  RP P
Sbjct: 668 MDESTCPSHQTWLEGAEASALACAARGRPSP 698

>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 492

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 98  GRRLVSPERIGTGQG-GERKHS*SQPENRPSAMSDGQGNAPPG--GYFIGRPAN 250
           GR     +    GQG G+RKH    P N PS  SD   +A PG   Y   RPAN
Sbjct: 432 GRGAAGGQGQSQGQGQGQRKHPYGHPGNAPSFPSD---HANPGFSPYGAARPAN 482

>Y4QC_RHISN (P55624) Hypothetical 63.6 kDa protein y4qC|
          Length = 583

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 217 RSIALSVAHGGWAVLRLRSAVLPLSALS---RAYPLRRDETTTSPT 89
           R+  LSV  G  ++L  R A LP +  S   RA+P RRD+  + PT
Sbjct: 188 RAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPT 233

>CRLS1_RAT (Q5U2V5) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)|
           (CLS)
          Length = 302

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
 Frame = +1

Query: 205 GQCSSWRLLHRPSGKHRRAQGERTAAGPP*ACS-GCEQSSW*L------LRRPPVKPRAE 363
           G   S R+  RP G      G R A  PP AC  GC    W L      LR P   PR  
Sbjct: 9   GAWGSLRVAVRPPGARLGRGGSRRALLPPAACCLGCLAERWRLRPAAFALRLPGTSPRTH 68

Query: 364 HDAA 375
              A
Sbjct: 69  CSGA 72

>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 917

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 224 LQEEHCPVRRSWRMGGSPAAISCASSLRPVP 132
           + E  CP  ++W  G    A++C++  RP P
Sbjct: 667 MDESSCPSHQTWLEGAEATALACSARGRPSP 697

>P85B_RAT (Q63788) Phosphatidylinositol 3-kinase regulatory beta subunit|
           (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta)
          Length = 722

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 356 EQNTTPP--PPKPSFLAKFCPCLAGGGAT 436
           EQ+T PP  PPKPS +      LA GG+T
Sbjct: 288 EQDTAPPALPPKPSKVKPAPTALANGGST 316

>PCD15_HUMAN (Q96QU1) Protocadherin-15 precursor|
          Length = 1955

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 371  PPPPKPSFLAKFCPCLAGGGATS 439
            PPPP  SFL+  C C+ G   T+
Sbjct: 1828 PPPPSASFLSTECVCITGVKCTT 1850

>VP14_EBV (P03179) Probable membrane antigen P140 (Tegument protein)|
          Length = 1318

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 230 SSLQEEHCP-VRRSWRMGGSPAAISCASSLRPVPCLSSPAR 111
           S L    CP    SW       A+   S+L P PC+S  AR
Sbjct: 404 SGLTAPPCPYAESSWAQAAVQTALELFSALYPAPCISGYAR 444

>UL47_HHV11 (P10231) Virion protein UL47 (82/81 kDa tegument protein)|
           (VMW82/81) (VP13/14)
          Length = 693

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 148 EEAQLIAAGEPPIRHERRTGQCSSWRLLHRPSGKHRRAQGER 273
           E  + +A  EPP+R  R   +    R    P   HRRA  +R
Sbjct: 50  EALEEMAGDEPPVRRRREGPRARRRRASEAPPTSHRRASRQR 91

>UL47_HHV1F (P08313) Virion protein UL47 (82/81 kDa tegument protein)|
           (VMW82/81) (VP13/14)
          Length = 664

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 148 EEAQLIAAGEPPIRHERRTGQCSSWRLLHRPSGKHRRAQGER 273
           E  + +A  EPP+R  R   +    R    P   HRRA  +R
Sbjct: 50  EALEEMAGDEPPVRRRREGPRARRRRASEAPPTSHRRASRQR 91

>GBX2_CHICK (O42230) Homeobox protein GBX-2 (Gastrulation and brain-specific|
           homeobox protein 2)
          Length = 340

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 371 PPPPKPSFLAKFCPCLAGGGA 433
           PPPP P+    FCP LA G A
Sbjct: 75  PPPPLPALPGAFCPGLAQGMA 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,810,081
Number of Sequences: 219361
Number of extensions: 1374590
Number of successful extensions: 4255
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)