ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet119e12 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 86.3 bits (212), Expect = 3e-17 Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 1/106 (0%) Frame = +3 Query: 93 LVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRA 272 +++LA + +C F AI++FGDS SDTG G A PPYGETFF R+ Sbjct: 20 MLSLAYASETC-------DFPAIFNFGDSNSDTG-----GKAAAFYPLNPPYGETFFHRS 67 Query: 273 TCRCSDGRLVVDFLAEKFGLPLLKPSKQG-GADFKKGANMAIIGAT 407 T R SDGRL++DF+AE F LP L P G++FK GA+ A G+T Sbjct: 68 TGRYSDGRLIIDFIAESFNLPYLSPYLSSLGSNFKHGADFATAGST 113
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 72.4 bits (176), Expect = 5e-13 Identities = 41/86 (47%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Frame = +3 Query: 150 FNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFG 329 F AI++FGDS SDTG L AG PP+G +FFG R DGRLV+DF+AE G Sbjct: 28 FPAIFNFGDSNSDTGGLSAAFGQAG-----PPHGSSFFGSPAGRYCDGRLVIDFIAESLG 82 Query: 330 LPLLKPSKQG-GADFKKGANMAIIGA 404 LP L G++F GAN A G+ Sbjct: 83 LPYLSAFLDSVGSNFSHGANFATAGS 108
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 42.4 bits (98), Expect = 6e-04 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 1/117 (0%) Frame = +3 Query: 3 PPNLPSVERSLLPLPVLRASQPATMASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSM 182 PP P+ + P P + S P A SP A S + A++ FGDS+ Sbjct: 75 PPPSPAPKPVPPPSPSPKPSPPKPPAPSPKPSPPKPPAPSP-PKPQNKTIPAVFFFGDSI 133 Query: 183 SDTGNLCVNGPPAGLTLTQPPYGETF-FGRATCRCSDGRLVVDFLAEKFGLPLLKPS 350 DTGN N L PYG F G AT R S+GR+ D++++ G+ + P+ Sbjct: 134 FDTGN--NNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGVKEIVPA 188
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 38.9 bits (89), Expect = 0.006 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = +3 Query: 156 AIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETF-FGRATCRCSDGRLVVDFLAEKFGL 332 A++ FGDS+ DTGN N + PYG F F AT R S+G + D+LA+ G+ Sbjct: 204 AVFFFGDSVFDTGN--NNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261 Query: 333 PLLKPS 350 + P+ Sbjct: 262 KEIVPA 267
>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 645 Score = 38.1 bits (87), Expect = 0.010 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Frame = +3 Query: 93 LVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRA 272 + A M+A S + +N +Y FGDS+SD GN GR Sbjct: 6 IFAPGMLALSISAISNAHAYNNLYVFGDSLSDGGN---------------------NGRY 44 Query: 273 T---CRCSDGRLVVDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLG 440 T ++ +L DF+A++ G+ L+ SK+GG ++ G A+ ++ Q +G Sbjct: 45 TVDGINGTESKLYNDFIAQQLGIELVN-SKKGGTNYAAGGATAVADLNNKHNTQDQVMG 102
>GCAT_AERHY (P10480) Phosphatidylcholine-sterol acyltransferase precursor (EC| 2.3.1.43) (Glycerophospholipid-cholesterol acyltransferase) (GCAT) Length = 335 Score = 33.1 bits (74), Expect = 0.33 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%) Frame = +3 Query: 102 LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCR 281 L +VA + A S F+ I FGDS+SDTG + G + PPY E R Sbjct: 9 LGLVALTVQAADSRPAFSRIVMFGDSLSDTGKM--YSKMRGYLPSSPPYYEG-------R 59 Query: 282 CSDGRLVVDFLAEKF-GLPLLKPSKQG 359 S+G + ++ L +F GL + ++ G Sbjct: 60 FSNGPVWLEQLTNEFPGLTIANEAEGG 86
>ESTA_PSEPU (Q6B6R8) Esterase estA precursor (EC 3.1.1.1)| Length = 646 Score = 31.6 bits (70), Expect = 0.97 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3 Query: 75 MASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLT 230 MA PL+ A + + S + ++ + FGDS+SD G PAG T Sbjct: 4 MALKPLVAACLLASLSTAPQAAPSPYSTLVVFGDSLSDAGQFPDPAGPAGST 55
>ESTA_PSEAE (O33407) Esterase estA precursor (EC 3.1.1.1)| Length = 646 Score = 31.6 bits (70), Expect = 0.97 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3 Query: 75 MASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLT 230 MA PL+ A + + S + ++ + FGDS+SD G PAG T Sbjct: 4 MALKPLVAACLLASLSTAPQAAPSPYSTLVVFGDSLSDAGQFPDPAGPAGST 55
>NU159_YEAST (P40477) Nucleoporin NUP159 (Nuclear pore protein NUP159)| Length = 1460 Score = 31.6 bits (70), Expect = 0.97 Identities = 24/88 (27%), Positives = 31/88 (35%) Frame = +3 Query: 165 SFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLK 344 SFG +GN V P +G +P +G FG FG P Sbjct: 554 SFGTPSFGSGNSSVEPPASGSAFGKPSFGTPSFGSGNSSAEP-----PASGSAFGKPSFG 608 Query: 345 PSKQGGADFKKGANMAIIGATTMGSSFF 428 S G A + + +I G GSS F Sbjct: 609 TSAFGTASSNETNSGSIFGKAAFGSSSF 636
>IDI2_THEVO (Q97CC2) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 347 Score = 30.4 bits (67), Expect = 2.2 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +3 Query: 303 VDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLGVG 446 VDFL + G P++ S GGA+ K N + T+ + ++GVG Sbjct: 47 VDFLGKHLGFPMVISSMTGGAEIAKKINYNL---ATVAEKYQLAMGVG 91
>TSP17_CAEEL (Q11098) Tetraspanin-17| Length = 243 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 37 SHSRCSELASQRQWRRP-RCSWRLRWWPRHASW 132 S++RC ++ + RQWR CS RL W W Sbjct: 174 SYARCQQIGANRQWRHAVGCSERLMSWFNEQIW 206
>NUOF_RICCN (Q92JB2) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 421 Score = 29.6 bits (65), Expect = 3.7 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Frame = +3 Query: 63 QPATMASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDT-------GNLCVNGPPA 221 +P + LL + A+ A++C++ + G+ +N + ++ + N C +G Sbjct: 100 EPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDC 159 Query: 222 GLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLKPSKQGG 362 + L + G C + +++ L K G+P LKP G Sbjct: 160 NIYLHR--------GAGAYICGEETALLESLEGKKGMPRLKPPFPAG 198
>PCDGB_PANTR (Q5DRC0) Protocadherin gamma A11 precursor (PCDH-gamma-A11)| Length = 935 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/69 (26%), Positives = 33/69 (47%) Frame = +3 Query: 102 LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCR 281 LA + +S F+ V G + +F + S +L + + L QP YG+T + +C Sbjct: 733 LAGMPTSHFVGVDG-----VQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCE 787 Query: 282 CSDGRLVVD 308 S+ L+ + Sbjct: 788 KSEPLLIAE 796
>PCDGB_HUMAN (Q9Y5H2) Protocadherin gamma A11 precursor (PCDH-gamma-A11)| Length = 935 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/69 (26%), Positives = 33/69 (47%) Frame = +3 Query: 102 LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAGLTLTQPPYGETFFGRATCR 281 LA + +S F+ V G + +F + S +L + + L QP YG+T + +C Sbjct: 733 LAGMPTSHFVGVDG-----VQAFLQTYSHEVSLIADSQKSHLIFPQPNYGDTLISQESCE 787 Query: 282 CSDGRLVVD 308 S+ L+ + Sbjct: 788 KSEPLLIAE 796
>NUOF_RICPR (Q9ZE33) NADH-quinone oxidoreductase chain F (EC 1.6.99.5) (NADH| dehydrogenase I, chain F) (NDH-1, chain F) Length = 421 Score = 29.3 bits (64), Expect = 4.8 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Frame = +3 Query: 63 QPATMASSPLLVALAMVASSCFLAVSGQKFNAIYSFGDSMSDT-------GNLCVNGPPA 221 +P + L+ + A+ A++C++ + G+ +N + ++ + N C +G Sbjct: 100 EPHKLIEGCLIASFAIGANTCYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDC 159 Query: 222 GLTLTQPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLKPSKQGG 362 + L + G C + +++ L K G+P LKP G Sbjct: 160 NIYLHR--------GAGAYICGEETALLESLEGKKGMPRLKPPFPAG 198
>VFUS_VACC6 (P26312) 14 kDa fusion protein| Length = 136 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -3 Query: 340 SSGSPNFSARKSTTRRPSEQRQVARPKKVSP*GGWV---RVRPAGGPLTQRL 194 +S S SA S +R+P+ ++ P+ S W R+RP PL QRL Sbjct: 26 TSRSSTGSANPSASRKPARYPRIHAPELQSGEARWPLWSRIRPLEDPLKQRL 77
>S28A1_RABIT (Q9MZT2) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside| cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) Length = 658 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Frame = +3 Query: 75 MASSPLLVA----------LAMVASSCFLAVSGQKFNAIYSFGDSMSDTGNLCVNGPPAG 224 M +PLL+ + V +S F +SG A SFG S + V G P Sbjct: 314 MTEAPLLIRPYLADLTLSEIHAVMTSGFATISGTVLGAFISFGIDASSLISASVMGAPCA 373 Query: 225 LTLTQPPYGE 254 L L++ Y E Sbjct: 374 LALSKLVYPE 383
>IDI2_THEAC (Q9HLX2) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 348 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +3 Query: 303 VDFLAEKFGLPLLKPSKQGGADFKKGANMAIIGATTMGSSFFQSLGVG 446 VDFL +K P++ S GGA+ K N + A F +GVG Sbjct: 47 VDFLGKKLKFPMIISSMTGGAEIAKNINRNLAVA---AERFGIGMGVG 91
>NQO1_PARDE (P29913) NADH-quinone oxidoreductase chain 1 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 1) (NDH-1, chain 1) Length = 431 Score = 28.5 bits (62), Expect = 8.2 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 3/103 (2%) Frame = +3 Query: 66 PATMASSPLLVALAMVASSCFLAVSGQ---KFNAIYSFGDSMSDTGNLCVNGPPAGLTLT 236 P T+ L+ + AM A + ++ + G+ + A+ + D D G L N +G Sbjct: 102 PHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFD 161 Query: 237 QPPYGETFFGRATCRCSDGRLVVDFLAEKFGLPLLKPSKQGGA 365 + G C + +++ L K G+P +KP GA Sbjct: 162 LYLH----HGAGAYICGEETALLESLEGKKGMPRMKPPFPAGA 200 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,544,275 Number of Sequences: 219361 Number of extensions: 815625 Number of successful extensions: 3395 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3391 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
