Clone Information

BLAST Search Result

Clone Name	baet119e01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467094.1\| Oryza sativa (japonica cultivar-group), mRNA	133	6e-28
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	133	6e-28
3	dbj\|AP002485.2\| Oryza sativa (japonica cultivar-group) genomic D...	133	6e-28
4	emb\|AJ307662.1\|OSA307662 Oryza sativa genomic DNA fragment, chro...	133	6e-28
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
6	dbj\|AP004375.3\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
7	dbj\|AP005726.2\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
8	ref\|XM_473395.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
9	emb\|AL607006.4\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	52	0.002
10	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
11	gb\|AY659078.1\| Synthetic construct Peudomonas aeruginosa clone F...	42	1.6
12	ref\|XM_597376.2\| PREDICTED: Bos taurus similar to Transcription ...	42	1.6
13	ref\|XM_542195.2\| PREDICTED: Canis familiaris similar to Kruppel-...	42	1.6
14	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	42	1.6
15	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
16	gb\|AE004699.1\| Pseudomonas aeruginosa PAO1, section 260 of 529 o...	42	1.6
17	gb\|AY204461.1\| Myxococcus xanthus clone C1078 hypothetical prote...	42	1.6
18	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	42	1.6
19	dbj\|AP005658.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
20	dbj\|AP005461.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
21	gb\|CP000148.1\| Geobacter metallireducens GS-15, complete genome	40	6.2
22	ref\|XM_511277.1\| PREDICTED: Pan troglodytes similar to sarco/end...	40	6.2
23	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	40	6.2
24	ref\|XM_463664.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.2
25	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	40	6.2
26	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	6.2
27	ref\|XM_993874.1\| PREDICTED: Mus musculus RIKEN cDNA 1110033M05 g...	40	6.2
28	ref\|XM_911881.2\| PREDICTED: Mus musculus RIKEN cDNA 1110033M05 g...	40	6.2
29	ref\|XM_193728.6\| PREDICTED: Mus musculus RIKEN cDNA 1110033M05 g...	40	6.2
30	gb\|BC057380.1\| Mus musculus RIKEN cDNA 1110033M05 gene, mRNA (cD...	40	6.2
31	ref\|XM_388011.1\| Gibberella zeae PH-1 chromosome 4 hypothetical ...	40	6.2
32	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	40	6.2
33	emb\|BX927150.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	6.2
34	dbj\|AK165273.1\| Mus musculus 6 days neonate spleen cDNA, RIKEN f...	40	6.2
35	dbj\|AK166285.1\| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD...	40	6.2
36	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	6.2
37	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	6.2
38	dbj\|AK052419.1\| Mus musculus 13 days embryo lung cDNA, RIKEN ful...	40	6.2
39	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
40	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	6.2
41	dbj\|AP004223.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
42	emb\|AL732332.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	6.2
43	emb\|AL442112.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	40	6.2
44	gb\|AC005940.3\|AC005940 Homo sapiens chromosome 17, clone hRPK.16...	40	6.2
45	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	6.2
46	emb\|CT025642.13\| Mouse DNA sequence from clone RP23-471B6 on chr...	40	6.2

>ref|XM_467094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1158

 Score =  133 bits (67), Expect = 6e-28
 Identities = 121/139 (87%)
 Strand = Plus / Plus

                                                                       
Query: 94  cacatcgagtccgtgcagacgggcttgccgacccgcctcgtcgagcccgacaggacgcgc 153
           ||||||||| ||||||||||||   ||||||| ||| |||| |||||||  |||||||||
Sbjct: 49  cacatcgaggccgtgcagacggcggtgccgacgcgcgtcgtggagcccgggaggacgcgc 108

                                                                       
Query: 154 gtcatagccgtggccgcgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcg 213
            || | |||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 109 ctcgtcgccgtggcggcgccgccgctcccggcgcccgcgctgcagcgccgcgtccgcgcg 168

                              
Query: 214 gttttctactaccgcggcg 232
           ||  |||||||||||||||
Sbjct: 169 gtgctctactaccgcggcg 187



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Plus

                                                                       
Query: 259 tgggtaaaggagtcgctgggcgaggtgctgtgcttcttcccggagatggcgggcaggctc 318
           ||||| |||||||||||| |||||| ||||  |  |  |||||||||||| ||| |||||
Sbjct: 226 tgggtgaaggagtcgctgagcgaggcgctggccgaccacccggagatggccggccggctc 285

                                                          
Query: 319 cggcggcacgccgacgggtcgtgggaggtgaagctgaacgacgccgg 365
           || || | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 286 cgccgccgcgccgacgggtcgtgggaggtgaagctgaacgacaccgg 332

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  133 bits (67), Expect = 6e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                            
Query: 94       cacatcgagtccgtgcagacgggcttgccgacccgcctcgtcgagcccgacaggacgcgc 153
                ||||||||| ||||||||||||   ||||||| ||| |||| |||||||  |||||||||
Sbjct: 26371805 cacatcgaggccgtgcagacggcggtgccgacgcgcgtcgtggagcccgggaggacgcgc 26371746

                                                                            
Query: 154      gtcatagccgtggccgcgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcg 213
                 || | |||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 26371745 ctcgtcgccgtggcggcgccgccgctcccggcgcccgcgctgcagcgccgcgtccgcgcg 26371686

                                   
Query: 214      gttttctactaccgcggcg 232
                ||  |||||||||||||||
Sbjct: 26371685 gtgctctactaccgcggcg 26371667



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 259      tgggtaaaggagtcgctgggcgaggtgctgtgcttcttcccggagatggcgggcaggctc 318
                ||||| |||||||||||| |||||| ||||  |  |  |||||||||||| ||| |||||
Sbjct: 26371628 tgggtgaaggagtcgctgagcgaggcgctggccgaccacccggagatggccggccggctc 26371569

                                                               
Query: 319      cggcggcacgccgacgggtcgtgggaggtgaagctgaacgacgccgg 365
                || || | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 26371568 cgccgccgcgccgacgggtcgtgggaggtgaagctgaacgacaccgg 26371522

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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:P0491E01
          Length = 136150

 Score =  133 bits (67), Expect = 6e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                          
Query: 94     cacatcgagtccgtgcagacgggcttgccgacccgcctcgtcgagcccgacaggacgcgc 153
              ||||||||| ||||||||||||   ||||||| ||| |||| |||||||  |||||||||
Sbjct: 104157 cacatcgaggccgtgcagacggcggtgccgacgcgcgtcgtggagcccgggaggacgcgc 104098

                                                                          
Query: 154    gtcatagccgtggccgcgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcg 213
               || | |||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 104097 ctcgtcgccgtggcggcgccgccgctcccggcgcccgcgctgcagcgccgcgtccgcgcg 104038

                                 
Query: 214    gttttctactaccgcggcg 232
              ||  |||||||||||||||
Sbjct: 104037 gtgctctactaccgcggcg 104019



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                          
Query: 259    tgggtaaaggagtcgctgggcgaggtgctgtgcttcttcccggagatggcgggcaggctc 318
              ||||| |||||||||||| |||||| ||||  |  |  |||||||||||| ||| |||||
Sbjct: 103980 tgggtgaaggagtcgctgagcgaggcgctggccgaccacccggagatggccggccggctc 103921

                                                             
Query: 319    cggcggcacgccgacgggtcgtgggaggtgaagctgaacgacgccgg 365
              || || | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 103920 cgccgccgcgccgacgggtcgtgggaggtgaagctgaacgacaccgg 103874

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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score =  133 bits (67), Expect = 6e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                         
Query: 94    cacatcgagtccgtgcagacgggcttgccgacccgcctcgtcgagcccgacaggacgcgc 153
             ||||||||| ||||||||||||   ||||||| ||| |||| |||||||  |||||||||
Sbjct: 95060 cacatcgaggccgtgcagacggcggtgccgacgcgcgtcgtggagcccgggaggacgcgc 95001

                                                                         
Query: 154   gtcatagccgtggccgcgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcg 213
              || | |||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 95000 ctcgtcgccgtggcggcgccgccgctcccggcgcccgcgctgcagcgccgcgtccgcgcg 94941

                                
Query: 214   gttttctactaccgcggcg 232
             ||  |||||||||||||||
Sbjct: 94940 gtgctctactaccgcggcg 94922



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                         
Query: 259   tgggtaaaggagtcgctgggcgaggtgctgtgcttcttcccggagatggcgggcaggctc 318
             ||||| |||||||||||| |||||| ||||  |  |  |||||||||||| ||| |||||
Sbjct: 94883 tgggtgaaggagtcgctgagcgaggcgctggccgaccacccggagatggccggccggctc 94824

                                                            
Query: 319   cggcggcacgccgacgggtcgtgggaggtgaagctgaacgacgccgg 365
             || || | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 94823 cgccgccgcgccgacgggtcgtgggaggtgaagctgaacgacaccgg 94777

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 297      cccggagatggcgggcaggctccggcggcacgccgacgggtcgtgggaggtgaagctgaa 356
                |||||||||||||||| ||||| | || | |   || |||||||||||||||||||||||
Sbjct: 16066089 cccggagatggcgggccggctctgacgccgcatagatgggtcgtgggaggtgaagctgaa 16066148

                         
Query: 357      cgacgccgg 365
                |||| ||||
Sbjct: 16066149 cgacaccgg 16066157

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>dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0475C12
          Length = 140863

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                          
Query: 297    cccggagatggcgggcaggctccggcggcacgccgacgggtcgtgggaggtgaagctgaa 356
              |||||||||||||||| ||||| | || | |   || |||||||||||||||||||||||
Sbjct: 138128 cccggagatggcgggccggctctgacgccgcatagatgggtcgtgggaggtgaagctgaa 138187

                       
Query: 357    cgacgccgg 365
              |||| ||||
Sbjct: 138188 cgacaccgg 138196

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>dbj|AP005726.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0028A18
          Length = 151080

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                        
Query: 297  cccggagatggcgggcaggctccggcggcacgccgacgggtcgtgggaggtgaagctgaa 356
            |||||||||||||||| ||||| | || | |   || |||||||||||||||||||||||
Sbjct: 4169 cccggagatggcgggccggctctgacgccgcatagatgggtcgtgggaggtgaagctgaa 4228

                     
Query: 357  cgacgccgg 365
            |||| ||||
Sbjct: 4229 cgacaccgg 4237

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>ref|XM_473395.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1152

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 170 cgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcggttttctactaccgcg 229
           ||||||||||| | ||  || |||||||||| ||| ||||||||||  ||||||||||||
Sbjct: 116 cgccgccgctcaccgccgcctcgctgcagcgccgcttccgcgcggtgctctactaccgcg 175

             
Query: 230 gc 231
           ||
Sbjct: 176 gc 177

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>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21,
             complete sequence
          Length = 141787

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 170   cgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcggttttctactaccgcg 229
             ||||||||||| | ||  || |||||||||| ||| ||||||||||  ||||||||||||
Sbjct: 47099 cgccgccgctcaccgccgcctcgctgcagcgccgcttccgcgcggtgctctactaccgcg 47040

               
Query: 230   gc 231
             ||
Sbjct: 47039 gc 47038

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                            
Query: 170      cgccgccgctcccggcgaccgcgctgcagcggcgcctccgcgcggttttctactaccgcg 229
                ||||||||||| | ||  || |||||||||| ||| ||||||||||  ||||||||||||
Sbjct: 27311171 cgccgccgctcaccgccgcctcgctgcagcgccgcttccgcgcggtgctctactaccgcg 27311112

                  
Query: 230      gc 231
                ||
Sbjct: 27311111 gc 27311110

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>gb|AY659078.1| Synthetic construct Peudomonas aeruginosa clone FLH038159.01F
           PA2711 gene, partial cds
          Length = 1092

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 228 cggcgacgacgcgccgctgga 248
           |||||||||||||||||||||
Sbjct: 435 cggcgacgacgcgccgctgga 455

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>ref|XM_597376.2| PREDICTED: Bos taurus similar to Transcription factor BTEB4 (Basic
           transcription element binding-protein 4) (BTE-binding
           protein 4) (Krueppel-like factor 16) (Dopamine receptor
           regulating factor) (LOC519163), mRNA
          Length = 516

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 268 gagtcgctgggcgaggtgctg 288
           |||||||||||||||||||||
Sbjct: 446 gagtcgctgggcgaggtgctg 426

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>ref|XM_542195.2| PREDICTED: Canis familiaris similar to Kruppel-like factor 16
           (LOC485077), mRNA
          Length = 324

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 268 gagtcgctgggcgaggtgctg 288
           |||||||||||||||||||||
Sbjct: 254 gagtcgctgggcgaggtgctg 234

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    gccgtggccgcgccgccgctc 180
              |||||||||||||||||||||
Sbjct: 533452 gccgtggccgcgccgccgctc 533432



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    ccgcggcgacgacgcgccgc 244
              ||||||||||||||||||||
Sbjct: 522617 ccgcggcgacgacgcgccgc 522636

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 165      ggccgcgccgccgctcccggc 185
                |||||||||||||||||||||
Sbjct: 22084181 ggccgcgccgccgctcccggc 22084201

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>gb|AE004699.1| Pseudomonas aeruginosa PAO1, section 260 of 529 of the complete
            genome
          Length = 10426

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 228  cggcgacgacgcgccgctgga 248
            |||||||||||||||||||||
Sbjct: 3598 cggcgacgacgcgccgctgga 3618

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>gb|AY204461.1| Myxococcus xanthus clone C1078 hypothetical protein gene, partial
            cds; and putative hemagglutinin (agmC) and outer membrane
            protein A-like protein genes, complete cds
          Length = 7994

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 342  ggaggtgaagctgaacgacgc 362
            |||||||||||||||||||||
Sbjct: 2857 ggaggtgaagctgaacgacgc 2877

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 321   gcggcacgccgacgggtcgtgggaggtga 349
             |||||| ||||||||||||||| ||||||
Sbjct: 14308 gcggcaggccgacgggtcgtggcaggtga 14336

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>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0620D11
          Length = 140245

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 165  ggccgcgccgccgctcccggc 185
            |||||||||||||||||||||
Sbjct: 1480 ggccgcgccgccgctcccggc 1500

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>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0612G07
          Length = 182548

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 165    ggccgcgccgccgctcccggc 185
              |||||||||||||||||||||
Sbjct: 122054 ggccgcgccgccgctcccggc 122074

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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 190     gcgctgcagcggcgcctccgcgcg 213
               |||||||||||||||| |||||||
Sbjct: 3090549 gcgctgcagcggcgccgccgcgcg 3090572

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>ref|XM_511277.1| PREDICTED: Pan troglodytes similar to sarco/endoplasmic reticulum
            Ca2+ -ATPase isoform e; ATPase, Ca(2+)-transporting,
            ubiquitous; sarcoplasmic/endoplasmic reticulum calcium
            ATPase 3; SR Ca(2+)-ATPase 3; calcium pump 3; adenosine
            triphosphatase, calcium; sarco/endoplasmic re...
            (LOC454440), mRNA
          Length = 6636

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  tggaggatttcctggcggac 420
            ||||||||||||||||||||
Sbjct: 5627 tggaggatttcctggcggac 5608

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 196    cagcggcgcctccgcgcggt 215
              ||||||||||||||||||||
Sbjct: 378084 cagcggcgcctccgcgcggt 378065

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>ref|XM_463664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 ccgcgccgccgctcccggcg 186
           ||||||||||||||||||||
Sbjct: 920 ccgcgccgccgctcccggcg 939

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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 165     ggccgcgccgccgctcccggcgac 188
               |||||||||||||| |||||||||
Sbjct: 2683097 ggccgcgccgccgcgcccggcgac 2683120

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   ggccgcgccgccgctcccggcgac 188
             |||||||||||||| |||||||||
Sbjct: 10616 ggccgcgccgccgcgcccggcgac 10639

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>ref|XM_993874.1| PREDICTED: Mus musculus RIKEN cDNA 1110033M05 gene (1110033M05Rik),
            mRNA
          Length = 3902

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1636 cggcgaccgcgctgcagcgg 1617

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>ref|XM_911881.2| PREDICTED: Mus musculus RIKEN cDNA 1110033M05 gene, transcript
            variant 6 (1110033M05Rik), mRNA
          Length = 3902

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1636 cggcgaccgcgctgcagcgg 1617

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>ref|XM_193728.6| PREDICTED: Mus musculus RIKEN cDNA 1110033M05 gene, transcript
            variant 1 (1110033M05Rik), mRNA
          Length = 3902

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1636 cggcgaccgcgctgcagcgg 1617

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>gb|BC057380.1| Mus musculus RIKEN cDNA 1110033M05 gene, mRNA (cDNA clone
            IMAGE:5721149), partial cds
          Length = 3882

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1599 cggcgaccgcgctgcagcgg 1580

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>ref|XM_388011.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07835.1)
           partial mRNA
          Length = 924

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 397 accatggaggatttcctggc 416
           ||||||||||||||||||||
Sbjct: 379 accatggaggatttcctggc 398

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     ccgtggccgcgccgccgctc 180
               ||||||||||||||||||||
Sbjct: 2027486 ccgtggccgcgccgccgctc 2027505



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     gcgacgacgcgccgctggag 249
               ||||||||||||||||||||
Sbjct: 1787522 gcgacgacgcgccgctggag 1787541

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>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 3/10
          Length = 348475

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    aggaggcagcgctggcgccg 455
              ||||||||||||||||||||
Sbjct: 296357 aggaggcagcgctggcgccg 296338

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>dbj|AK165273.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430007J04 product:hypothetical
            Endoplasmic reticulum targeting sequence containing
            protein, full insert sequence
          Length = 1905

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1654 cggcgaccgcgctgcagcgg 1635

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>dbj|AK166285.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length
            enriched library, clone:G830031C24 product:hypothetical
            Endoplasmic reticulum targeting sequence containing
            protein, full insert sequence
          Length = 2218

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1412 cggcgaccgcgctgcagcgg 1393

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 227     gcggcgacgacgcgccgctg 246
               ||||||||||||||||||||
Sbjct: 1211900 gcggcgacgacgcgccgctg 1211881

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 320     ggcggcacgccgacgggtcg 339
               ||||||||||||||||||||
Sbjct: 3434223 ggcggcacgccgacgggtcg 3434242

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>dbj|AK052419.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430014C20 product:hypothetical protein,
            full insert sequence
          Length = 3606

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  cggcgaccgcgctgcagcgg 201
            ||||||||||||||||||||
Sbjct: 1605 cggcgaccgcgctgcagcgg 1586

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 167      ccgcgccgccgctcccggcg 186
                ||||||||||||||||||||
Sbjct: 40502794 ccgcgccgccgctcccggcg 40502813

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    aggaggcagcgctggcgccg 455
              ||||||||||||||||||||
Sbjct: 992745 aggaggcagcgctggcgccg 992726

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>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1033B05
          Length = 138882

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   ccgcgccgccgctcccggcg 186
             ||||||||||||||||||||
Sbjct: 64418 ccgcgccgccgctcccggcg 64437

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>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 227   gcggcgacgacgcgccgctggagg 250
             ||||||||||||||| ||||||||
Sbjct: 23512 gcggcgacgacgcgcggctggagg 23535

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>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete
             sequence
          Length = 76529

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   gccgtggccgcgccgccgct 179
             ||||||||||||||||||||
Sbjct: 70001 gccgtggccgcgccgccgct 69982

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>gb|AC005940.3|AC005940 Homo sapiens chromosome 17, clone hRPK.167_N_20, complete sequence
          Length = 158414

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   tggaggatttcctggcggac 420
             ||||||||||||||||||||
Sbjct: 52741 tggaggatttcctggcggac 52722

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 324    gcacgccgacgggtcgtgggaggt 347
              ||||||||||||||||| ||||||
Sbjct: 109063 gcacgccgacgggtcgttggaggt 109040

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>emb|CT025642.13| Mouse DNA sequence from clone RP23-471B6 on chromosome 13, complete
             sequence
          Length = 175367

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   cggcgaccgcgctgcagcgg 201
             ||||||||||||||||||||
Sbjct: 91495 cggcgaccgcgctgcagcgg 91476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,941,454
Number of Sequences: 3902068
Number of extensions: 2941454
Number of successful extensions: 65646
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64081
Number of HSP's gapped (non-prelim): 1565
length of query: 459
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 437
effective length of database: 17,147,199,772
effective search space: 7493326300364
effective search space used: 7493326300364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result